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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Logan, D.T."

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Search Summary

This query matches 197 Structures.

Refinements

Structure Determination Methodology

experimental (197)

Scientific Name of Source Organism

	Homo sapiens (85)
	Thermus thermophilus HB8 (19)
	Thermotoga maritima (10)
	Escherichia coli (8)
	Rhodothermus marinus (8)
	Segatella copri (7)
	Bacillus anthracis (5)
	Chromobacterium violaceum (5)
	Tequatrovirus T4 (5)
	Thermotoga maritima MSB8 (5)

More...

Taxonomy

	Bacteria (105)
	Eukaryota (87)
	Duplodnaviria (5)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (184)
	ELECTRON MICROSCOPY (13)
	NEUTRON DIFFRACTION (4)

Polymer Entity Type

	Protein (197)
	DNA (2)
	RNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (8)
	1.0 - 1.5 (55)
	1.5 - 2.0 (51)
	2.0 - 2.5 (46)
	2.5 - 3.0 (25)
	3.0 - 3.5 (13)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (6)
	2005 - 2009 (20)
	2010 - 2014 (39)
	2015 - 2019 (77)
	2020 - 2024 (44)
	2025 - 2029 (5)

Enzyme Classification Name

	Oxidoreductases (56)
	Hydrolases (19)
	Transferases (11)
	Ligases (3)
	Lyases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (104)
	Cyclic (81)
	Dihedral (9)
	Helical (6)

SCOP Classification

	All beta proteins (73)
	Alpha and beta proteins (a/b) (29)
	All alpha proteins (17)
	Artifacts (24)
	Alpha and beta proteins (a+b) (9)
	Membrane and cell surface proteins and peptides (2)
	Low resolution protein structures (1)
	Small proteins (1)

AllSelected

1 to 25 of 197 Structures

Page 1 of 8

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1ATI \| pdb_00001ati	Download File View File

CRYSTAL STRUCTURE OF GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS

Logan, D.T., Mazauric, M.-H., Kern, D., Moras, D.

(1995) EMBO J 14: 4156-4167

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Thermus thermophilus HB8
Macromolecule	GLYCYL-TRNA SYNTHETASE (protein) GLYCYL-tRNA SYNTHETASE (protein)

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1B76 \| pdb_00001b76	Download File View File

GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH ATP

Arnez, J.G., Moras, D.

(1999) J Mol Biology 286: 1449-1459

Released	1999-01-28
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Glycine--tRNA ligase (protein)
Unique Ligands	ATP

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1BIQ \| pdb_00001biq	Download File View File

RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN MUTANT E238A

Logan, D.T., Demare, F., Persson, B.O., Slaby, A., Sjoberg, B.M., Nordlund, P.

(1998) Biochemistry 37: 10798-10807

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE (protein)
Unique Ligands	FE, FE2, HG, OH

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1GGM \| pdb_00001ggm	Download File View File

GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH GLYCYL-ADENYLATE

Arnez, J.G., Moras, D.

(1999) J Mol Biology 286: 1449-1459

Released	1999-01-28
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Glycine--tRNA ligase (protein)
Unique Ligands	GAP

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1H78 \| pdb_00001h78	Download File View File

STRUCTURAL BASIS FOR ALLOSTERIC SUBSTRATE SPECIFICITY REGULATION IN CLASS III RIBONUCLEOTIDE REDUCTASES: NRDD IN COMPLEX WITH DCTP.

Larsson, K.-M., Andersson, J., Sjoeberg, B.-M., Nordlund, P., Logan, D.T.

(2001) Structure 9: 739

Released	2002-07-04
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Tequatrovirus T4
Macromolecule	ANAEROBIC RIBONUCLEOTIDE-TRIPHOSPHATE REDUCTASE LARGE CHAIN (protein)
Unique Ligands	DCP, MG

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1H79 \| pdb_00001h79	Download File View File

STRUCTURAL BASIS FOR ALLOSTERIC SUBSTRATE SPECIFICITY REGULATION IN CLASS III RIBONUCLEOTIDE REDUCTASES: NRDD IN COMPLEX WITH DTTP

Larsson, K.-M., Andersson, J., Sjoeberg, B.-M., Nordlund, P., Logan, D.T.

(2001) Structure 9: 739

Released	2002-03-28
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Tequatrovirus T4
Macromolecule	ANAEROBIC RIBONUCLEOTIDE-TRIPHOSPHATE REDUCTASE LARGE CHAIN (protein)
Unique Ligands	FE2, MG, TTP

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1H7A \| pdb_00001h7a	Download File View File

Structural basis for allosteric substrate specificity regulation in class III ribonucleotide reductases: NRDD in complex with dATP

Larsson, K.-M., Andersson, J., Sjoeberg, B.-M., Nordlund, P., Logan, D.T.

(2001) Structure 9: 739

Released	2002-03-28
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Tequatrovirus T4
Macromolecule	ANAEROBIC RIBONUCLEOTIDE-TRIPHOSPHATE REDUCTASE LARGE CHAIN (protein)
Unique Ligands	DTP, FE2, MG

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1H7B \| pdb_00001h7b	Download File View File

Structural basis for allosteric substrate specificity regulation in class III ribonucleotide reductases, native NRDD

Larsson, K.-M., Andersson, J., Sjoeberg, B.-M., Nordlund, P., Logan, D.T.

(2001) Structure 9: 739

Released	2002-03-28
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Tequatrovirus T4
Macromolecule	ANAEROBIC RIBONUCLEOTIDE-TRIPHOSPHATE REDUCTASE LARGE CHAIN (protein)
Unique Ligands	PO4

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1HK8 \| pdb_00001hk8	Download File View File

STRUCTURAL BASIS FOR ALLOSTERIC SUBSTRATE SPECIFICITY REGULATION IN CLASS III RIBONUCLEOTIDE REDUCTASES: NRDD IN COMPLEX WITH DGTP

Larsson, K.-M., Andersson, J., Sjoeberg, B.-M., Nordlund, P., Logan, D.T.

(2003) Proc Natl Acad Sci U S A 100: 3826

Released	2003-03-27
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Tequatrovirus T4
Macromolecule	ANAEROBIC RIBONUCLEOTIDE-TRIPHOSPHATE REDUCTASE (protein)
Unique Ligands	DGT, MN, ZN

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1PFR \| pdb_00001pfr	Download File View File

RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN

Logan, D.T., Su, X.D., Aberg, A., Regnstrom, K., Hajdu, J., Eklund, H., Nordlund, P.

(1996) Structure 4: 1053-1064

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE (protein)
Unique Ligands	FE, HG

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1TDQ \| pdb_00001tdq	Download File View File

Structural basis for the interactions between tenascins and the C-type lectin domains from lecticans: evidence for a cross-linking role for tenascins

Lundell, A., Olin, A.I., Moergelin, M., al-Karadaghi, S., Aspberg, A., Logan, D.T.

(2004) Structure 12: 1495-1506

Released	2004-08-31
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rattus norvegicus
Macromolecule	Aggrecan core protein (protein) Tenascin-R (protein)
Unique Ligands	CA

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1XIK \| pdb_00001xik	Download File View File

RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN

Logan, D.T., Su, X.-D., Aberg, A., Regnstrom, K., Hajdu, J., Eklund, H., Nordlund, P.

(1996) Structure 4: 1053-1064

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE (protein)
Unique Ligands	FE2, HG

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1XJE \| pdb_00001xje	Download File View File

Structural mechanism of allosteric substrate specificity in a ribonucleotide reductase: dTTP-GDP complex

Larsson, K.-M., Jordan, A., Eliasson, R., Reichard, P., Logan, D.T., Nordlund, P.

(2004) Nat Struct Mol Biol 11: 1142-1149

Released	2005-10-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	ribonucleotide reductase, B12-dependent (protein)
Unique Ligands	GDP, GOL, MG, TTP

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1XJF \| pdb_00001xjf	Download File View File

Structural mechanism of allosteric substrate specificity in a ribonucleotide reductase: dATP complex

Larsson, K.-M., Jordan, A., Eliasson, R., Reichard, P., Logan, D.T., Nordlund, P.

(2004) Nat Struct Mol Biol 11: 1142-1149

Released	2005-12-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermotoga maritima
Macromolecule	ribonucleotide reductase, B12-dependent (protein)
Unique Ligands	DTP, MG

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1XJG \| pdb_00001xjg	Download File View File

Structural mechanism of allosteric substrate specificity in a ribonucleotide reductase: dATP-UDP complex

Larsson, K.-M., Jordan, A., Eliasson, R., Reichard, P., Logan, D.T., Nordlund, P.

(2004) Nat Struct Mol Biol 11: 1142-1149

Released	2005-12-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermotoga maritima
Macromolecule	ribonucleotide reductase, B12-dependent (protein)
Unique Ligands	DTP, MG, UDP

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1XJJ \| pdb_00001xjj	Download File View File

Structural mechanism of allosteric substrate specificity in a ribonucleotide reductase: dGTP complex

Larsson, K.-M., Jordan, A., Eliasson, R., Reichard, P., Logan, D.T., Nordlund, P.

(2005) Nat Struct Mol Biol 11: 1142-1149

Released	2005-12-20
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Thermotoga maritima
Macromolecule	ribonucleotide reductase, B12-dependent (protein)
Unique Ligands	DGT, MG

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1XJK \| pdb_00001xjk	Download File View File

Structural mechanism of allosteric substrate specificity in a ribonucleotide reductase: dGTP-ADP complex

Larsson, K.-M., Jordan, A., Eliasson, R., Reichard, P., Logan, D.T., Nordlund, P.

(2004) Nat Struct Mol Biol 11: 1142-1149

Released	2005-11-22
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Thermotoga maritima
Macromolecule	ribonucleotide reductase, B12-dependent (protein)
Unique Ligands	ADP, DGT, MG

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1XJM \| pdb_00001xjm	Download File View File

Structural mechanism of allosteric substrate specificity in a ribonucleotide reductase: dTTP complex

Larsson, K.-M., Jordan, A., Eliasson, R., Reichard, P., Logan, D.T., Nordlund, P.

(2004) Nat Struct Mol Biol 11: 1142-1149

Released	2005-12-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermotoga maritima
Macromolecule	ribonucleotide reductase, B12-dependent (protein)
Unique Ligands	MG, TTP

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1XJN \| pdb_00001xjn	Download File View File

Structural mechanism of allosteric substrate specificity in a ribonucleotide reductase: dATP-CDP complex

Larsson, K.-M., Jordan, A., Eliasson, R., Reichard, P., Logan, D.T., Nordlund, P.

(2004) Nat Struct Mol Biol 11: 1142-1149

Released	2005-12-06
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Thermotoga maritima
Macromolecule	ribonucleotide reductase, B12-dependent (protein)
Unique Ligands	CDP, CL, DTP

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1YFD \| pdb_00001yfd	Download File View File

Crystal structure of the Y122H mutant of ribonucleotide reductase R2 protein from E. coli

Kolberg, M., Logan, D.T., Bleifuss, G., Poetsch, S., Sjoeberg, B.M., Graeslund, A., Lubitz, W., Lassmann, G., Lendzian, F.

(2005) J Biological Chem 280: 11233-11246

Released	2005-02-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Ribonucleoside-diphosphate reductase 1 beta chain (protein)
Unique Ligands	FEO, HG