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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ma, J."

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Search Summary

This query matches 397 Structures.

Refinements

Structure Determination Methodology

experimental (397)

Scientific Name of Source Organism

	Homo sapiens (121)
	synthetic construct (32)
	Mus musculus (28)
	Drosophila melanogaster (24)
	Arabidopsis thaliana (19)
	Severe acute respiratory syndrome coronavirus 2 (15)
	unidentified eubacterium clone A70 (10)
	Legionella pneumophila (9)
	Porphyridium purpureum (9)
	African swine fever virus BA71V (8)

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Taxonomy

	Eukaryota (247)
	Bacteria (95)
	Riboviria (51)
	other sequences (32)
	Archaea (16)
	Varidnaviria (14)
	Duplodnaviria (9)
	unclassified sequences (6)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (280)
	ELECTRON MICROSCOPY (111)
	SOLUTION NMR (6)

Polymer Entity Type

	Protein (379)
	RNA (53)
	DNA (30)
	NA-hybrid (3)

Refinement Resolution (Å)

	1.0 - 1.5 (12)
	1.5 - 2.0 (70)
	2.0 - 2.5 (103)
	2.5 - 3.0 (72)
	3.0 - 3.5 (82)
	3.5 - 4.0 (31)
	4.0 - 4.5 (13)
	> 4.5 (8)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (39)
	2010 - 2014 (37)
	2015 - 2019 (120)
	2020 - 2024 (185)
	2025 - 2029 (12)

Enzyme Classification Name

	Hydrolases (97)
	Transferases (83)
	Oxidoreductases (23)
	Translocases (6)
	Ligases (5)
	Lyases (5)
	Isomerases (1)

Membrane Protein Annotation

	mpstruc (33)
	PDBTM (38)
	OPM (34)
	MemProtMD (25)

Symmetry Type

	Asymmetric (241)
	Cyclic (120)
	Dihedral (16)
	Helical (4)
	Icosahedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (27)
	All beta proteins (23)
	Alpha and beta proteins (a+b) (27)
	Membrane and cell surface proteins and peptides (4)
	All alpha proteins (16)
	Artifacts (19)
	Coiled coil proteins (4)
	Multi-domain proteins (alpha and beta) (2)
	Peptides (1)

AllSelected

1 to 25 of 397 Structures

Page 1 of 16

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1FB9 \| pdb_00001fb9	Download File View File

EFFECTS OF S-SULFONATION ON THE SOLUTION STRUCTURE OF SALMON CALCITONIN

Wu, H., Mao, J., Wang, Y., Dou, H.

(2003) Biochem Biophys Res Commun 306: 582-589

Released	2003-07-01
Method	SOLUTION NMR
Organisms	Oncorhynchus gorbuscha
Macromolecule	CALCITONIN ANALOGUE (protein)

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1J0Q \| pdb_00001j0q	Download File View File

Solution Structure of Oxidized Bovine Microsomal Cytochrome b5 mutant V61H

Wu, H., Huang, Z., Cao, C., Zhang, Q., Wang, Y.-H., Ma, J.-B., Xue, L.-L.

(2003) Biochem Biophys Res Commun 307: 600-609

Released	2003-08-12
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	cytochrome b5 (protein)
Unique Ligands	HEM

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1O5W \| pdb_00001o5w	Download File View File

The structure basis of specific recognitions for substrates and inhibitors of rat monoamine oxidase A

Ma, J., Yoshimura, M., Yamashita, E., Nakagawa, A., Ito, A., Tsukihara, T.

(2004) J Mol Biology 338: 103-114

Released	2004-04-20
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Rattus norvegicus
Macromolecule	Amine oxidase [flavin-containing] A (protein)
Unique Ligands	FAD, MLG

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1R7R \| pdb_00001r7r	Download File View File

The crystal structure of murine p97/VCP at 3.6A

Huyton, T., Pye, V.E., Briggs, L.C., Flynn, T.C., Beuron, F., Kondo, H., Ma, J., Zhang, X., Freemont, P.S.

(2003) J Struct Biol 144: 337-348

Released	2003-12-16
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Mus musculus
Macromolecule	Transitional endoplasmic reticulum ATPase (protein)
Unique Ligands	ADP

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1V8Z \| pdb_00001v8z	Download File View File

X-ray crystal structure of the Tryptophan Synthase b2 Subunit from Hyperthermophile, Pyrococcus furiosus

Hioki, Y., Ogasahara, K., Lee, S.J., Ma, J., Ishida, M., Yamagata, Y., Matsuura, Y., Ota, M., Kuramitsu, S., Yutani, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Eur J Biochem 271: 2624-2635

Released	2005-02-22
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Pyrococcus furiosus
Macromolecule	Tryptophan synthase beta chain 1 (protein)
Unique Ligands	NA, PLP

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1WDW \| pdb_00001wdw	Download File View File

Structural basis of mutual activation of the tryptophan synthase a2b2 complex from a hyperthermophile, Pyrococcus furiosus

Lee, S.J., Ogasahara, K., Ma, J., Nishio, K., Ishida, M., Yamagata, Y., Tsukihara, T., Yutani, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Biochemistry 44: 11417-11427

Released	2005-07-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Pyrococcus furiosus
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain 1 (protein)
Unique Ligands	PLP

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1WOF \| pdb_00001wof	Download File View File

Crystal Structure Of SARS-CoV Mpro in Complex with an Inhibitor N1

Yang, H., Bartlam, M., Xue, X., Yang, K., Liang, W., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-08-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	I12

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1Z15 \| pdb_00001z15	Download File View File

Crystal structure analysis of periplasmic Leu/Ile/Val-binding protein in superopen form

Trakhanov, S.D., Vyas, N.K., Kristensen, D.M., Ma, J., Quiocho, F.A.

(2005) Biochemistry 44: 6597-6608

Released	2005-10-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Leu/Ile/Val-binding protein (protein)

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1Z16 \| pdb_00001z16	Download File View File

Crystal structure analysis of periplasmic Leu/Ile/Val-binding protein with bound leucine

Trakhanov, S.D., Vyas, N.K., Kristensen, D.M., Ma, J., Quiocho, F.A.

(2005) Biochemistry 44: 6597-6608

Released	2005-10-04
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Escherichia coli K-12
Macromolecule	Leu/Ile/Val-binding protein (protein)
Unique Ligands	CD, LEU

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1Z17 \| pdb_00001z17	Download File View File

Crystal structure analysis of periplasmic Leu/Ile/Val-binding protein with bound ligand isoleucine

Trakhanov, S.D., Vyas, N.K., Kristensen, D.M., Ma, J., Quiocho, F.A.

(2005) Biochemistry 44: 6597-6608

Released	2005-10-04
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Escherichia coli K-12
Macromolecule	Leu/Ile/Val-binding protein (protein)
Unique Ligands	ILE, MRD

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1Z18 \| pdb_00001z18	Download File View File

Crystal structure analysis of periplasmic Leu/Ile/Val-binding protein with bound valine

Trakhanov, S.D., Vyas, N.K., Kristensen, D.M., Ma, J., Quiocho, F.A.

(2005) Biochemistry 44: 6597-6608

Released	2005-10-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Leu/Ile/Val-binding protein (protein)
Unique Ligands	CD, VAL

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1ZQ3 \| pdb_00001zq3	Download File View File

NMR Solution Structure of the Bicoid Homeodomain Bound to the Consensus DNA Binding Site TAATCC

Baird-Titus, J.M., Rance, M., Clark-Baldwin, K., Ma, J., Vrushank, D.

(2006) J Mol Biology 356: 1137-1151

Released	2006-02-14
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	Homeotic bicoid protein (protein) 5'-D(CPGPGPGPGPAPTPTPAPGPAPGPC)-3' (nucleic acid) 5'-D(GPCPTPCPTPAPAPTPCPCPCPCPG)-3' (nucleic acid)

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2AMD \| pdb_00002amd	Download File View File

Crystal Structure Of SARS_CoV Mpro in Complex with an Inhibitor N9

Yang, H., Xue, X., Yang, K., Zhao, Q., Bartlam, M., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-09-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	9IN

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2AMP \| pdb_00002amp	Download File View File

Crystal Structure Of Porcine Transmissible Gastroenteritis Virus Mpro in Complex with an Inhibitor N1

Yang, H., Xue, X., Yang, K., Zhao, Q., Bartlam, M., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-09-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Transmissible gastroenteritis virus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	I12

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2AMQ \| pdb_00002amq	Download File View File

Crystal Structure Of SARS_CoV Mpro in Complex with an Inhibitor N3

Yang, H., Xue, X., Yang, K., Zhao, Q., Bartlam, M., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-09-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Severe acute respiratory syndrome-related coronavirus synthetic construct
Macromolecule	3C-like proteinase (protein) N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE (protein)

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2D2D \| pdb_00002d2d	Download File View File

Crystal Structure Of SARS-CoV Mpro in Complex with an Inhibitor I2

Yang, H., Bartlam, M., Xue, X., Yang, K., Liang, W., Ding, Y., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ENB

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2LKX \| pdb_00002lkx	Download File View File

NMR structure of the homeodomain of Pitx2 in complex with a TAATCC DNA binding site

Baird-Titus, J.M., Doerdelmann, T., Chaney, B.A., Clark-Baldwin, K., Dave, V., Ma, J.

(2005) Biochemistry 44: 7497-7511

Released	2012-05-02
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Pituitary homeobox 3 (protein) DNA (5'-D(CPGPGPGPGPAPTPTPAPGPAPGPC)-3') (nucleic acid) DNA (5'-D(GPCPTPCPTPAPAPTPCPCPCPCPG)-3') (nucleic acid)

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2LR1 \| pdb_00002lr1	Download File View File

Structural Mechanism for Bax Inhibition by Cytomegalovirus Protein vMIA

Ma, J.

(2012) Proc Natl Acad Sci U S A 109: 20901-20906

Released	2012-12-05
Method	SOLUTION NMR
Organisms	Homo sapiens Human herpesvirus 5 strain AD169
Macromolecule	Apoptosis regulator BAX (protein) Immediate early glycoprotein (protein)

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2OQ0 \| pdb_00002oq0	Download File View File

Crystal Structure of the First HIN-200 Domain of Interferon-Inducible Protein 16

Lam, R., Liao, J.C.C., Ravichandran, M., Ma, J., Tempel, W., Chirgadze, N.Y., Arrowsmith, C.H., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2007-02-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Gamma-interferon-inducible protein Ifi-16 (protein)
Unique Ligands	CL

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2PFD \| pdb_00002pfd	Download File View File

Anisotropically refined structure of FTCD

Poon, B.K., Chen, X., Lu, M., Quiocho, F.A., Wang, Q., Ma, J.

To be published

Released	2007-04-24
Method	X-RAY DIFFRACTION 3.42 Å
Organisms	Rattus norvegicus
Macromolecule	Formimidoyltransferase-cyclodeaminase (protein)

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2PSQ \| pdb_00002psq	Download File View File

Crystal Structure of Unphosphorylated Unactivated Wild Type FGF Receptor 2 (FGFR2) Kinase Domain

Chen, H., Mohammadi, M.

(2007) Mol Cell 27: 717-730

Released	2007-09-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Fibroblast growth factor receptor 2 (protein)
Unique Ligands	SO4

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2PVF \| pdb_00002pvf	Download File View File

Crystal Structure of Tyrosine Phosphorylated Activated FGF Receptor 2 (FGFR2) Kinase Domain in Complex with ATP Analog and Substrate Peptide

Chen, H., Mohammadi, M.

(2007) Mol Cell 27: 717-730

Released	2007-09-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Fibroblast growth factor receptor 2 (protein)
Unique Ligands	ACP, MG

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2PVY \| pdb_00002pvy	Download File View File

Crystal Structure of FGF Receptor 2 (FGFR2) Kinase Domain Harboring the Pathogenic K659N Mutation Responsible for an Unclassified Craniosynostosis Syndrome.

Chen, H., Mohammadi, M.

(2007) Mol Cell 27: 717-730

Released	2007-09-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Fibroblast growth factor receptor 2 (protein)
Unique Ligands	ACP, SO4

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2PWL \| pdb_00002pwl	Download File View File

Crystal Structure of FGF Receptor 2 (FGFR2) Kinase Domain Harboring the Pathogenic N549H Mutation Responsible for Crouzon Syndrome.

Chen, H., Mohammadi, M.

(2007) Mol Cell 27: 717-730

Released	2007-09-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Fibroblast growth factor receptor 2 (protein)
Unique Ligands	ACP, SO4

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2PY3 \| pdb_00002py3	Download File View File

Crystal Structure of FGF Receptor 2 (FGFR2) Kinase Domain Harboring the Pathogenic E565G Mutation Responsible for Pfeiffer Syndrome

Chen, H., Mohammadi, M.

(2007) Mol Cell 27: 717-730

Released	2007-09-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Fibroblast growth factor receptor 2 (protein)
Unique Ligands	ACP, MG, SO4

1 to 25 of 397 Structures

Page 1 of 16

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1FB9 | pdb_00001fb9

1J0Q | pdb_00001j0q

1O5W | pdb_00001o5w

1R7R | pdb_00001r7r

1V8Z | pdb_00001v8z

1WDW | pdb_00001wdw

1WOF | pdb_00001wof

1Z15 | pdb_00001z15

1Z16 | pdb_00001z16

1Z17 | pdb_00001z17

1Z18 | pdb_00001z18

1ZQ3 | pdb_00001zq3

2AMD | pdb_00002amd

2AMP | pdb_00002amp

2AMQ | pdb_00002amq

2D2D | pdb_00002d2d

2LKX | pdb_00002lkx

2LR1 | pdb_00002lr1

2OQ0 | pdb_00002oq0

2PFD | pdb_00002pfd

2PSQ | pdb_00002psq

2PVF | pdb_00002pvf

2PVY | pdb_00002pvy

2PWL | pdb_00002pwl

2PY3 | pdb_00002py3