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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Matsunaga, T."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Agaricales sp. 'Arthromyces ramosus (5)
	Homo sapiens (5)
	Macaca fascicularis (2)
	Mus musculus (2)
	Rattus norvegicus (2)
	Thermus thermophilus (1)
	Triticum aestivum (1)

Taxonomy

	Eukaryota (17)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (17)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (18)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (10)
	2.0 - 2.5 (6)
	2.5 - 3.0 (2)

Release Date

	1995 - 1999 (5)
	2000 - 2004 (3)
	2005 - 2009 (3)
	2010 - 2014 (3)
	2020 - 2024 (4)

Enzyme Classification Name

Oxidoreductases (13)

Symmetry Type

	Asymmetric (13)
	Cyclic (3)
	Dihedral (1)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (7)
	All alpha proteins (6)
	All beta proteins (2)

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1 to 18 of 18 Structures

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1C8I	Download File View File

BINDING MODE OF HYDROXYLAMINE TO ARTHROMYCES RAMOSUS PEROXIDASE

Wariishi, H., Nonaka, D., Johjima, T., Nakamura, N., Naruta, Y., Kubo, K., Fukuyama, K.

(2000) J Biological Chem 275: 32919-32924

Released	2001-01-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PROTEIN (PEROXIDASE) (protein)
Unique Ligands	BMA, CA, HEM, HOA
Unique branched monosaccharides	NAG

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1CK6	Download File View File

BINDING MODE OF SALICYLHYDROXAMIC ACID TO ARTHROMYCES RAMOSUS PEROXIDASE

Fukuyama, K., Itakura, H.

(1999) Biochemistry 38: 12558-12568

Released	1999-12-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PROTEIN (PEROXIDASE) (protein)
Unique Ligands	BMA, CA, HEM, SHA
Unique branched monosaccharides	NAG

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1EHL	Download File View File

64M-2 ANTIBODY FAB COMPLEXED WITH D(5HT)(6-4)T

Yokoyama, H., Mizutani, R., Satow, Y., Komatsu, Y., Ohtsuka, E., Nikaido, O.

(2000) J Mol Biology 299: 711-723

Released	2001-02-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	ANTI-(6-4) PHOTOPRODUCT ANTIBODY 64M-2 FAB (HEAVY CHAIN) (protein) ANTI-(6-4) PHOTOPRODUCT ANTIBODY 64M-2 FAB (LIGHT CHAIN) (protein) 5'-(D(5HT)P*(6-4)T)-3' (nucleic acid)

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1GZA	Download File View File

PEROXIDASE

Fukuyama, K., Itakura, H.

(1997) J Biological Chem 272: 5752-5756

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PEROXIDASE (protein)
Unique Ligands	CA, HEM, IOD
Unique branched monosaccharides	NAG

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1GZB	Download File View File

PEROXIDASE

Fukuyama, K., Kunishima, N., Amada, F.

(1996) FEBS Lett 378: 291-294

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PEROXIDASE (protein)
Unique Ligands	CA, HEM
Unique branched monosaccharides	NAG

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1HSR	Download File View File

BINDING MODE OF BENZHYDROXAMIC ACID TO ARTHROMYCES RAMOSUS PEROXIDASE

Fukuyama, K., Itakura, H.

(1997) FEBS Lett 412: 107-110

Released	1998-07-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PEROXIDASE (protein)
Unique Ligands	BHO, CA, HEM
Unique branched monosaccharides	NAG

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1HSS	Download File View File

0.19 ALPHA-AMYLASE INHIBITOR FROM WHEAT

Oda, Y., Fukuyama, K.

(1997) Biochemistry 36: 13503-13511

Released	1998-07-01
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Triticum aestivum
Macromolecule	0.19 ALPHA-AMYLASE INHIBITOR (protein)

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1KEG	Download File View File

Antibody 64M-2 Fab complexed with dTT(6-4)TT

Yokoyama, H., Mizutani, R., Satow, Y., Sato, K., Komatsu, Y., Ohtsuka, E., Nikaido, O.

(2012) Acta Crystallogr D Biol Crystallogr 68: 232-238

Released	2002-11-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	Anti-(6-4) photoproduct antibody 64M-2 Fab (heavy chain) (protein) Anti-(6-4) photoproduct antibody 64M-2 Fab (light chain) (protein) 5'-D(TP(64T)PTPT)-3' (nucleic acid)
Unique Ligands	NI

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2D1Y	Download File View File

Crystal structure of TT0321 from Thermus thermophilus HB8

Asada, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2009) Chem Biol Interact 178: 117-126

Released	2006-03-02
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Thermus thermophilus
Macromolecule	hypothetical protein TT0321 (protein)
Unique Ligands	NAD

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2O48	Download File View File

Crystal structure of Mammalian Dimeric Dihydrodiol Dehydrogenase

Carbone, V., El-Kabbani, O.

(2008) Proteins 70: 176-187

Released	2007-07-31
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Macaca fascicularis
Macromolecule	Dimeric dihydrodiol dehydrogenase (protein)
Unique Ligands	AC6, BME, SO4

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2O4U	Download File View File

Crystal structure of Mammalian Dimeric Dihydrodiol Dehydrogenase

Carbone, V., El-Kabbani, O.

(2008) Proteins 70: 176-187

Released	2007-07-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Macaca fascicularis
Macromolecule	Dimeric dihydrodiol dehydrogenase (protein)
Unique Ligands	BME, GOL, PO4

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3NTY	Download File View File

Crystal structure of AKR1C1 in complex with NADP and 5-Phenyl,3-chlorosalicylic acid

Dhagat, U., El-Kabbani, O.

(2011) Bioorg Med Chem Lett 21: 2564-2567

Released	2011-04-13
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Homo sapiens
Macromolecule	Aldo-keto reductase family 1 member C1 (protein)
Unique Ligands	5P3, NAP, ZN

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3O3R	Download File View File

Crystal Structure of AKR1B14 in complex with NADP

Sundaram, K., Dhagat, U., El-Kabbani, O.

(2011) Bioorg Med Chem Lett 21: 801-804

Released	2011-01-19
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Rattus norvegicus
Macromolecule	Aldo-keto reductase family 1, member B7 (protein)
Unique Ligands	NAP

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3QKZ	Download File View File

Crystal structure of mutant His269Arg AKR1B14

Sundaram, K., El-Kabbani, O.

(2012) Acta Crystallogr Sect F Struct Biol Cryst Commun 68: 400-403

Released	2012-02-29
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Rattus norvegicus
Macromolecule	Aldo-keto reductase family 1, member B7 (protein)
Unique Ligands	NAP

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7C7F	Download File View File

Crystal structures of AKR1C3 binary complex with NADP+

Irie, K., Toyooka, N., Endo, S.

(2020) J Med Chem 63: 10396-10411

Released	2020-09-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Aldo-keto reductase family 1 member C3 (protein)
Unique Ligands	ACT, EDO, NAP

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7C7G	Download File View File

Crystal structures of AKR1C3 ternary complex with NADP+ and the chromene derivative 2j

Irie, K., Toyooka, N., Endo, S.

(2020) J Med Chem 63: 10396-10411

Released	2020-09-23
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	Aldo-keto reductase family 1 member C3 (protein)
Unique Ligands	FJR, NAP

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7C7H	Download File View File

Crystal structures of AKR1C3 ternary complex with NADP+ and the chromene derivative 2l

Irie, K., Toyooka, N., Endo, S.

(2020) J Med Chem 63: 10396-10411

Released	2020-09-23
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	Aldo-keto reductase family 1 member C3 (protein)
Unique Ligands	FJU, NAP