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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Miura, T."

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Homo sapiens (24)
	Plasmodium falciparum (2)
	Severe acute respiratory syndrome coronavirus 2 (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (26)
	Riboviria (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (26)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (27)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (7)
	2.0 - 2.5 (4)
	2.5 - 3.0 (7)
	3.0 - 3.5 (2)

Release Date

	2000 - 2004 (1)
	2010 - 2014 (17)
	2015 - 2019 (7)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (12)
	Transferases (11)
	Lyases (3)
	Ligases (1)

Symmetry Type

	Asymmetric (21)
	Cyclic (13)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (14)
	All beta proteins (1)

AllSelected

1 to 25 of 27 Structures

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1JAS \| pdb_00001jas	Download File View File

HsUbc2b

Miura, T., Klaus, W., Ross, A., Guentert, P., Senn, H.

(2002) J Biomol NMR 22: 89-92

Released	2003-09-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	UBIQUITIN-CONJUGATING ENZYME E2-17 KDA (protein)

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3B24 \| pdb_00003b24	Download File View File

Hsp90 alpha N-terminal domain in complex with an aminotriazine fragment molecule

Fukami, T.A., Ono, N.

(2011) Bioorg Med Chem Lett 21: 5778-5783

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	B2J, MG

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3B25 \| pdb_00003b25	Download File View File

Hsp90 alpha N-terminal domain in complex with an inhibitor CH4675194

Fukami, T.A., Ono, N.

(2011) Bioorg Med Chem Lett 21: 5778-5783

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	B2K

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3B26 \| pdb_00003b26	Download File View File

Hsp90 alpha N-terminal domain in complex with an inhibitor Ro1127850

Fukami, T.A., Ono, N.

(2011) Bioorg Med Chem Lett 21: 5778-5783

Released	2011-09-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	B2L

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3B27 \| pdb_00003b27	Download File View File

Hsp90 alpha N-terminal domain in complex with an inhibitor Ro4919127

Fukami, T.A., Ono, N.

(2011) Bioorg Med Chem Lett 21: 5778-5783

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	B2T

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3B28 \| pdb_00003b28	Download File View File

Hsp90 alpha N-terminal domain in complex with an inhibitor CH5015765

Fukami, T.A., Ono, N.

(2011) Bioorg Med Chem Lett 21: 5778-5783

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	B2X, GOL, MG

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3ORN \| pdb_00003orn	Download File View File

Mitogen-activated protein kinase kinase 1 (MEK1) in complex with CH4987655 and MgAMP-PNP

Lukacs, C.M., Janson, C., Schuck, V., Belunis, C.

(2011) Bioorg Med Chem Lett 21: 1795-1801

Released	2011-03-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity mitogen-activated protein kinase kinase 1 (protein)
Unique Ligands	3OR, ANP, MG, PGE, SO4

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3OS3 \| pdb_00003os3	Download File View File

Mitogen-activated protein kinase kinase 1 (MEK1) in complex with CH4858061 and MgATP

Lukacs, C.M., Janson, C., Schuck, V., Belunis, C.

(2011) Bioorg Med Chem Lett 21: 1795-1801

Released	2011-07-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity mitogen-activated protein kinase kinase 1 (protein)
Unique Ligands	3OS, ATP, MG

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3QRV \| pdb_00003qrv	Download File View File

Crystal structure of plasmepsin I (PMI) from Plasmodium falciparum

Bhaumik, P., Gustchina, A., Wlodawer, A.

(2011) J Struct Biol 175: 73-84

Released	2011-05-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Plasmodium falciparum
Macromolecule	Plasmepsin-1 (protein)

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3QS1 \| pdb_00003qs1	Download File View File

Crystal structure of KNI-10006 complex of Plasmepsin I (PMI) from Plasmodium falciparum

Bhaumik, P., Gustchina, A., Wlodawer, A.

(2011) J Struct Biol 175: 73-84

Released	2011-05-11
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Plasmodium falciparum
Macromolecule	Plasmepsin-1 (protein)
Unique Ligands	006, GOL

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3VHA \| pdb_00003vha	Download File View File

Hsp90 alpha N-terminal domain in complex with a macrocyclic inhibitor

Fukami, T.A., Ono, N.

(2012) Bioorg Med Chem Lett 22: 1136-1141

Released	2012-07-18
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	MES, VHA

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3VHC \| pdb_00003vhc	Download File View File

Hsp90 alpha N-terminal domain in complex with a macrocyclic inhibitor

Fukami, T.A., Ono, N.

(2012) Bioorg Med Chem Lett 22: 1136-1141

Released	2012-07-18
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	MG, VHC

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3VHD \| pdb_00003vhd	Download File View File

Hsp90 alpha N-terminal domain in complex with a macrocyclic inhibitor, CH5164840

Fukami, T.A., Ono, N.

(2012) Bioorg Med Chem Lett 22: 1136-1141

Released	2012-07-18
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	VHE

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3VW9 \| pdb_00003vw9	Download File View File

Human Glyoxalase I with an N-hydroxypyridone inhibitor

Fukami, T.A., Irie, M., Matsuura, T.

(2012) Bioorg Med Chem Lett 22: 7486-7489

Released	2012-12-12
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Homo sapiens
Macromolecule	Lactoylglutathione lyase (protein)
Unique Ligands	EPE, HPJ, ZN

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3W0T \| pdb_00003w0t	Download File View File

Human Glyoxalase I with an N-hydroxypyridone derivative inhibitor

Fukami, T.A., Irie, M., Matsuura, T.

To be published

Released	2013-11-06
Method	X-RAY DIFFRACTION 1.351 Å
Organisms	Homo sapiens
Macromolecule	Lactoylglutathione lyase (protein)
Unique Ligands	EPE, HPU, ZN

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3W0U \| pdb_00003w0u	Download File View File

human Glyoxalase I with an N-hydroxypyridone inhibitor

Fukami, T.A., Irie, M., Matsuura, T.

To be published

Released	2013-11-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Lactoylglutathione lyase (protein)
Unique Ligands	HPW, ZN

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3WHA \| pdb_00003wha	Download File View File

Hsp90 alpha N-terminal domain in complex with a tricyclic inhibitor

Fukami, T.A., Ono, N.

(2014) Bioorg Med Chem 22: 892-905

Released	2014-01-29
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	GOL, MG, WHA

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3WIG \| pdb_00003wig	Download File View File

Human MEK1 kinase in complex with CH5126766 and MgAMP-PNP

Lukacs, C.M., Janson, C., Schuck, V.

(2014) Cancer Cell 25: 697-710

Released	2014-06-04
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity mitogen-activated protein kinase kinase 1 (protein)
Unique Ligands	ANP, CHU, CL, MG, PG4

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5B71 \| pdb_00005b71	Download File View File

Crystal structure of complement C5 in complex with SKY59

Irie, M., Shimizu, Y., Sampei, Z., Fukuzawa, T.

(2017) Sci Rep 7: 1080-1080

Released	2017-05-03
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Homo sapiens
Macromolecule	Complement C5 beta chain (protein) SKY59 Fab heavy chain (protein) SKY59 Fab light chain (protein)

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5GJD \| pdb_00005gjd	Download File View File

Crystal structure of human TAK1/TAB1 fusion protein in complex with ligand 2

Irie, M., Nakamura, M., Fukami, T.A., Matsuura, T., Morishima, K.

(2016) Chem Pharm Bull (Tokyo) 64: 1622-1629

Released	2016-11-16
Method	X-RAY DIFFRACTION 2.79 Å
Organisms	Homo sapiens
Macromolecule	TAK1 kinase - TAB1 chimera fusion protein (protein)
Unique Ligands	6V3

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5GJF \| pdb_00005gjf	Download File View File

Crystal structure of human TAK1/TAB1 fusion protein in complex with ligand 3

Irie, M., Nakamura, M., Fukami, T.A., Matsuura, T., Morishima, K.

(2016) Chem Pharm Bull (Tokyo) 64: 1622-1629

Released	2016-11-16
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Homo sapiens
Macromolecule	TAK1 kinase - TAB1 chimera fusion protein (protein)
Unique Ligands	6V4

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5GJG \| pdb_00005gjg	Download File View File

Crystal structure of human TAK1/TAB1 fusion protein in complex with ligand 4

Irie, M., Nakamura, M., Fukami, T.A., Matsuura, T., Morishima, K.

(2016) Chem Pharm Bull (Tokyo) 64: 1622-1629

Released	2016-11-16
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Homo sapiens
Macromolecule	TAK1 kinase - TAB1 chimera fusion protein (protein)
Unique Ligands	6V5

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5JGA \| pdb_00005jga	Download File View File

Crystal structure of human TAK1/TAB1 fusion protein in complex with ligand 11c

Irie, M., Nakamura, M., Fukami, T.A., Matsuura, T., Morishima, K.

(2016) Bioorg Med Chem 24: 4206-4217

Released	2016-07-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	TAK1 kinase - TAB1 chimera fusion protein (protein)
Unique Ligands	6KC

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5JGB \| pdb_00005jgb	Download File View File

Crystal structure of human TAK1/TAB1 fusion protein in complex with ligand 10

Irie, M., Nakamura, M., Fukami, T.A., Matsuura, T., Morishima, K.

(2016) Bioorg Med Chem 24: 4206-4217

Released	2016-07-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	TAK1 kinase - TAB1 chimera fusion protein (protein)
Unique Ligands	6JV

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5JGD \| pdb_00005jgd	Download File View File

Crystal structure of human TAK1/TAB1 fusion protein in complex with ligand 12

Irie, M., Nakamura, M., Fukami, T.A., Matsuura, T., Morishima, K.

(2016) Bioorg Med Chem 24: 4206-4217

Released	2016-07-27
Method	X-RAY DIFFRACTION 3.101 Å
Organisms	Homo sapiens
Macromolecule	TAK1 kinase - TAB1 chimera fusion protein (protein)
Unique Ligands	6KD

1 to 25 of 27 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1JAS | pdb_00001jas

3B24 | pdb_00003b24

3B25 | pdb_00003b25

3B26 | pdb_00003b26

3B27 | pdb_00003b27

3B28 | pdb_00003b28

3ORN | pdb_00003orn

3OS3 | pdb_00003os3

3QRV | pdb_00003qrv

3QS1 | pdb_00003qs1

3VHA | pdb_00003vha

3VHC | pdb_00003vhc

3VHD | pdb_00003vhd

3VW9 | pdb_00003vw9

3W0T | pdb_00003w0t

3W0U | pdb_00003w0u

3WHA | pdb_00003wha

3WIG | pdb_00003wig

5B71 | pdb_00005b71

5GJD | pdb_00005gjd

5GJF | pdb_00005gjf

5GJG | pdb_00005gjg

5JGA | pdb_00005jga

5JGB | pdb_00005jgb

5JGD | pdb_00005jgd