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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Noland, C.L."

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Search Summary

This query matches 243 Structures.

Refinements

Structure Determination Methodology

experimental (243)

Scientific Name of Source Organism

	Homo sapiens (50)
	Priestia megaterium (20)
	Equus caballus (19)
	Physeter macrocephalus (13)
	Pseudomonas aeruginosa PAO1 (9)
	Gallus gallus (8)
	Azospirillum brasilense (7)
	Eastern equine encephalitis virus (7)
	Mus musculus (7)
	Saccharomyces cerevisiae S288C (7)

More...

Taxonomy

	Eukaryota (135)
	Bacteria (90)
	Riboviria (15)
	Archaea (7)
	other sequences (4)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (228)
	ELECTRON MICROSCOPY (11)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (243)
	DNA (2)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (33)
	1.5 - 2.0 (99)
	2.0 - 2.5 (59)
	2.5 - 3.0 (26)
	3.0 - 3.5 (9)
	3.5 - 4.0 (5)
	4.0 - 4.5 (2)
	> 4.5 (6)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (3)
	2000 - 2004 (9)
	2005 - 2009 (36)
	2010 - 2014 (35)
	2015 - 2019 (63)
	2020 - 2024 (94)

Enzyme Classification Name

	Oxidoreductases (67)
	Hydrolases (30)
	Lyases (11)
	Transferases (14)
	Ligases (4)
	Isomerases (1)

Membrane Protein Annotation

	mpstruc (2)
	OPM (2)
	MemProtMD (1)

Symmetry Type

	Asymmetric (152)
	Cyclic (54)
	Dihedral (13)
	Octahedral (19)
	Icosahedral (9)
	Tetrahedral (2)

SCOP Classification

	All alpha proteins (99)
	Alpha and beta proteins (a/b) (22)
	Artifacts (24)
	Alpha and beta proteins (a+b) (20)
	All beta proteins (9)
	Small proteins (6)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 243 Structures

Page 1 of 10

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1D8J \| pdb_00001d8j	Download File View File

SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA

Okuda, M., Watanabe, Y., Okamura, H., Hanaoka, F., Ohkuma, Y., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2000) EMBO J 19: 1346-1356

Released	2000-04-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	GENERAL TRANSCRIPTION FACTOR TFIIE-BETA (protein)

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1D8K \| pdb_00001d8k	Download File View File

SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA

Okuda, M., Watanabe, Y., Okamura, H., Hanaoka, F., Ohkuma, Y., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2000) EMBO J 19: 1346-1356

Released	2000-04-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	GENERAL TRANSCRIPTION FACTOR TFIIE-BETA (protein)

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1J3F \| pdb_00001j3f	Download File View File

Crystal Structure of an Artificial Metalloprotein:Cr(III)(3,3'-Me2-salophen)/apo-A71G Myoglobin

Koshiyama, T., Kono, M., Ohashi, M., Ueno, T., Suzuki, A., Yamane, T., Watanabe, Y.

(2005) J Am Chem Soc 127: 6556-6562

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Physeter macrocephalus
Macromolecule	Myoglobin (protein)
Unique Ligands	CR, CZM, PO4

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1LUE \| pdb_00001lue	Download File View File

RECOMBINANT SPERM WHALE MYOGLOBIN H64D/V68A/D122N MUTANT (MET)

Phillips Jr., G.N.

(2003) Biochemistry 42: 10174-10181

Released	2003-11-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Physeter macrocephalus
Macromolecule	Myoglobin (protein)
Unique Ligands	HEM, SO4

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1O16 \| pdb_00001o16	Download File View File

RECOMBINANT SPERM WHALE MYOGLOBIN H64D/V68S/D122N MUTANT (MET)

Phillips Jr., G.N.

(2003) Biochemistry 42: 10174-10181

Released	2003-11-04
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Physeter macrocephalus
Macromolecule	MYOGLOBIN (protein)
Unique Ligands	HEM, SO4

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1OFJ \| pdb_00001ofj	Download File View File

RECOMBINANT SPERM WHALE MYOGLOBIN L29H/H64L/D122N MUTANT (WITH INITIATOR MET)

Liong, E.C., Phillips Jr., G.N.

(1999) J Biological Chem 274: 2838-2844

Released	1998-05-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Physeter macrocephalus
Macromolecule	MYOGLOBIN (protein)
Unique Ligands	HEM, SO4

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1OFK \| pdb_00001ofk	Download File View File

RECOMBINANT SPERM WHALE MYOGLOBIN F43H, H64L MUTANT (MET)

Liong, E.C., Phillips Jr., G.N.

(1999) J Biological Chem 274: 2838-2844

Released	1998-11-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Physeter macrocephalus
Macromolecule	MYOGLOBIN (protein)
Unique Ligands	HEM, SO4

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1QVR \| pdb_00001qvr	Download File View File

Crystal Structure Analysis of ClpB

Lee, S., Sowa, M.E., Watanabe, Y., Sigler, P.B., Chiu, W., Yoshida, M., Tsai, F.T.F.

(2003) Cell 115: 229-240

Released	2003-10-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermus thermophilus
Macromolecule	ClpB protein (protein)
Unique Ligands	ANP, PT

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1UF2 \| pdb_00001uf2	Download File View File

The Atomic Structure of Rice dwarf Virus (RDV)

Nakagawa, A., Miyazaki, N., Taka, J., Naitow, H., Ogawa, A., Fujimoto, Z., Mizuno, H., Higashi, T., Watanabe, Y., Omura, T., Cheng, R.H., Tsukihara, T.

(2003) Structure 11: 1227-1238

Released	2003-10-14
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Rice dwarf virus
Macromolecule	Core protein P3 (protein) Outer capsid protein P8 (protein) Structural protein P7 (protein)

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1UFJ \| pdb_00001ufj	Download File View File

Crystal Structure of an Artificial Metalloprotein:Fe(III)(3,3'-Me2-salophen)/apo-A71G Myoglobin

Ueno, T., Ohashi, M., Kono, M., Kondo, K., Suzuki, A., Yamane, T., Watanabe, Y.

(2004) Inorg Chem 43: 2852-2858

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Physeter macrocephalus
Macromolecule	MYOGLOBIN (protein)
Unique Ligands	CZM, FE, PO4

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1UFP \| pdb_00001ufp	Download File View File

Crystal Structure of an Artificial Metalloprotein:Fe(III)(3,3'-Me2-salophen)/apo-wild type Myoglobin

Ueno, T., Ohashi, M., Kono, M., Kondo, K., Suzuki, A., Yamane, T., Watanabe, Y.

(2004) Inorg Chem 43: 2852-2858

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Physeter macrocephalus
Macromolecule	Myoglobin (protein)
Unique Ligands	PO4

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1V9Q \| pdb_00001v9q	Download File View File

Crystal Structure of an Artificial Metalloprotein:Mn(III)(3,3'-Me2-salophen)/apo-A71G Myoglobin

Ueno, T., Koshiyama, T., Kono, M., Kondo, K., Ohashi, M., Suzuki, A., Yamane, T., Watanabe, Y.

(2005) J Am Chem Soc 127: 6556-6562

Released	2005-05-17
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Physeter macrocephalus
Macromolecule	Myoglobin (protein)
Unique Ligands	CZM, MN3, PO4

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1WQV \| pdb_00001wqv	Download File View File

Human Factor Viia-Tissue Factor Complexed with propylsulfonamide-D-Thr-Met-p-aminobenzamidine

Kadono, S., Sakamoto, A., Kikuchi, Y., Oh-eda, M., Yabuta, N., Koga, T., Hattori, K., Shiraishi, T., Haramura, M., Kodama, H.

(2004) Biochem Biophys Res Commun 324: 1227-1233

Released	2005-10-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor VII (protein) Tissue factor (protein)
Unique Ligands	BGC, CA, FUC, PSM

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1WSS \| pdb_00001wss	Download File View File

Human Factor Viia-Tissue Factor in Complex with peptide-mimetic inhibitor that has two charged groups in P2 and P4

Kadono, S., Sakamoto, A., Kikuchi, Y., Oh-Eda, M., Yabuta, N., Koga, T., Hattori, K., Shiraishi, T., Haramura, M., Kodama, H., Ono, Y., Esaki, T., Sato, H., Watanabe, Y., Itoh, S., Ohta, M., Kozono, T.

(2005) Acta Crystallogr Sect F Struct Biol Cryst Commun 61: 169-173

Released	2005-11-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor VII (protein) Tissue factor (protein)
Unique Ligands	3CB, BGC, CA, FUC

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1WTG \| pdb_00001wtg	Download File View File

Human Factor Viia-Tissue Factor Complexed with ethylsulfonamide-D-biphenylalanine-Gln-p-aminobenzamidine

Kadono, S., Sakamoto, S., Kikuchi, Y., Oh-Eda, M., Yabuta, N., Kitazawa, K., Yoshihashi, T., Suzuki, T., Koga, T., Hattori, K., Shiraishi, T., Kodama, M., Haramura, H., Ono, Y., Esaki, T., Sato, H., Watanabe, Y., Itoh, S., Ohta, M., Kozono, T.

(2005) Biochem Biophys Res Commun 326: 859-865

Released	2005-11-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor VII (protein) Tissue factor (protein)
Unique Ligands	3BP, BGC, CA, FUC

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1WUN \| pdb_00001wun	Download File View File

Human Factor Viia-Tissue Factor Complexed with ethylsulfonamide-D-Trp-Gln-p-aminobenzamidine

Kadono, S., Sakamoto, A., Kikuchi, Y., Oh-eda, M., Yabuta, N., Yoshihashi, K., Kitazawa, T., Suzuki, T., Koga, T., Hattori, K., Shiraishi, T., Haramura, M., Kodama, H., Ono, Y., Esaki, T., Sato, H., Watanabe, Y., Itoh, S., Ohta, M., Kozono, T.

(2005) Biochem Biophys Res Commun 327: 589-596

Released	2005-12-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor VII (protein) Tissue factor (protein)
Unique Ligands	BGC, CA, FUC, P5B

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1WV7 \| pdb_00001wv7	Download File View File

Human Factor Viia-Tissue Factor Complexed with ethylsulfonamide-D-5-propoxy-Trp-Gln-p-aminobenzamidine

(2005) Biochem Biophys Res Commun 327: 589-596

Released	2005-12-11
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor VII (protein) Tissue factor (protein)
Unique Ligands	5PI, BGC, CA, FUC