RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Ono, N."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Pyrococcus horikoshii OT3 (12)
	Homo sapiens (10)
	Thermus thermophilus HB8 (4)
	Thermus thermophilus (1)

Taxonomy

	Archaea (12)
	Eukaryota (10)
	Bacteria (5)

Experimental Method

X-RAY DIFFRACTION (27)

Polymer Entity Type

Protein (27)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (10)
	2.0 - 2.5 (8)
	2.5 - 3.0 (4)

Release Date

	2005 - 2009 (17)
	2010 - 2014 (9)
	2015 - 2019 (1)

Enzyme Classification Name

	Transferases (13)
	Hydrolases (12)

Symmetry Type

	Cyclic (18)
	Asymmetric (14)

SCOP Classification

	Alpha and beta proteins (a/b) (16)
	Alpha and beta proteins (a+b) (10)
	All beta proteins (1)

AllSelected

1 to 25 of 27 Structures

Page 1 of 2

Sort by

Explore in 3D

2DCT \| pdb_00002dct	Download File View File

Crystal structure of the TT1209 from Thermus thermophilus HB8

Asada, Y., Sugahara, M., Shimizu, K., Yamamoto, H., Shimada, H., Nakamoto, T., Ono, N., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-24
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Thermus thermophilus HB8
Macromolecule	hypothetical protein TTHA0104 (protein)
Unique Ligands	CL, NA

Explore in 3D

2ED3 \| pdb_00002ed3	Download File View File

Mutant I127M structure of PH0725 from Pyrococcus horikoshii OT3

Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-08-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	diphthine synthase (protein)
Unique Ligands	SAH

Explore in 3D

2ED5 \| pdb_00002ed5	Download File View File

Mutant S147M structure of PH0725 from Pyrococcus horikoshii OT3

Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-08-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	diphthine synthase (protein)
Unique Ligands	GOL, NA, SAH

Explore in 3D

2EEQ \| pdb_00002eeq	Download File View File

Mutant Y29M structure of PH0725 from Pyrococcus horikoshii OT3

Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-08-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	diphthine synthase (protein)
Unique Ligands	GOL, SAH, SO4

Explore in 3D

2EJZ \| pdb_00002ejz	Download File View File

Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (Y11M)

Asada, Y., Taketa, M., Ono, N., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-09-25
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	diphthine synthase (protein)
Unique Ligands	GOL, NA, SAH

Explore in 3D

2EKZ \| pdb_00002ekz	Download File View File

Structural study of Project ID TTHB049 from Thermus thermophilus HB8 (L52M)

Asada, Y., Matsuura, Y., Ono, N., Nakamoto, T., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-02
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Alpha-ribazole-5'-phosphate phosphatase (protein)

Explore in 3D

2EL0 \| pdb_00002el0	Download File View File

Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (L21M)

Asada, Y., Matsuura, Y., Ono, N., Shimada, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	diphthine synthase (protein)
Unique Ligands	SAH

Explore in 3D

2EL1 \| pdb_00002el1	Download File View File

Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (L44M)

Asada, Y., Taketa, M., Ono, N., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	diphthine synthase (protein)
Unique Ligands	NA, SAH

Explore in 3D

2EL3 \| pdb_00002el3	Download File View File

Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (L242M)

Asada, Y., Matsuura, Y., Ono, N., Shimada, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	diphthine synthase (protein)
Unique Ligands	NA, SAH

Explore in 3D

2ENI \| pdb_00002eni	Download File View File

Mutant F197M structure of PH0725 from Pyrococcus horikoshii OT3

Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	diphthine synthase (protein)
Unique Ligands	NA, SAH

Explore in 3D

2ENU \| pdb_00002enu	Download File View File

Mutant L121M structure of TTHB049 from Thermus thermophilus HB8

Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Alpha-ribazole-5'-phosphate phosphatase (protein)
Unique Ligands	GOL

Explore in 3D

2EOA \| pdb_00002eoa	Download File View File

Structural study of Project ID TTHB049 from Thermus thermophilus HB8 (W85H)

Asada, Y., Taketa, M., Ono, N., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-02
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Thermus thermophilus
Macromolecule	Alpha-ribazole-5'-phosphate phosphatase (protein)

Explore in 3D

2OWD \| pdb_00002owd	Download File View File

Crystal structure of TTHB049 from Thermus thermophilus HB8

Sugahara, M., Taketa, M., Ono, N., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-08-21
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Alpha-ribazole-5'-phosphate phosphatase (protein)
Unique Ligands	GOL, NA

Explore in 3D

2OWK \| pdb_00002owk	Download File View File

Crystal structure of PH0725 from Pyrococcus horikoshii OT3

Sugahara, M., Matsuura, Y., Ono, N., Nakamoto, T., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-08-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	diphthine synthase (protein)
Unique Ligands	SAH, SO4

Explore in 3D

2P2X \| pdb_00002p2x	Download File View File

Crystal structure of PH0725 from Pyrococcus horikoshii OT3

Sugahara, M., Ono, N., Taketa, M., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-09-11
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Probable diphthine synthase (protein)
Unique Ligands	SAH

Explore in 3D

2P5C \| pdb_00002p5c	Download File View File

Crystal structure of PH0725 from Pyrococcus horikoshii OT3

Yamamoto, H., Taketa, M., Ono, N., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-09-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	diphthine synthase (protein)
Unique Ligands	GOL, SAH

Explore in 3D

2PCH \| pdb_00002pch	Download File View File

Crystal structure of PH0725 from Pyrococcus horikoshii OT3

Sugahara, M., Taketa, M., Ono, N., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Probable diphthine synthase (protein)
Unique Ligands	NA, SAH

Explore in 3D

3B24 \| pdb_00003b24	Download File View File

Hsp90 alpha N-terminal domain in complex with an aminotriazine fragment molecule

Fukami, T.A., Ono, N.

(2011) Bioorg Med Chem Lett 21: 5778-5783

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	B2J, MG

Explore in 3D

3B25 \| pdb_00003b25	Download File View File

Hsp90 alpha N-terminal domain in complex with an inhibitor CH4675194

Fukami, T.A., Ono, N.

(2011) Bioorg Med Chem Lett 21: 5778-5783

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	B2K

Explore in 3D

3B26 \| pdb_00003b26	Download File View File

Hsp90 alpha N-terminal domain in complex with an inhibitor Ro1127850

Fukami, T.A., Ono, N.

(2011) Bioorg Med Chem Lett 21: 5778-5783

Released	2011-09-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	B2L

Explore in 3D

3B27 \| pdb_00003b27	Download File View File

Hsp90 alpha N-terminal domain in complex with an inhibitor Ro4919127

Fukami, T.A., Ono, N.

(2011) Bioorg Med Chem Lett 21: 5778-5783

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	B2T

Explore in 3D

3B28 \| pdb_00003b28	Download File View File

Hsp90 alpha N-terminal domain in complex with an inhibitor CH5015765

Fukami, T.A., Ono, N.

(2011) Bioorg Med Chem Lett 21: 5778-5783

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	B2X, GOL, MG