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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Paetzel, M."

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Search Summary

This query matches 41 Structures.

Refinements

Structure Determination Methodology

experimental (41)

Scientific Name of Source Organism

	Gallus gallus (24)
	Simian immunodeficiency virus (7)
	Homo sapiens (6)
	Human immunodeficiency virus 1 (5)
	uncultured virus (2)
	Human immunodeficiency virus type 1 BH10 (1)
	Marek's disease herpesvirus (strain MD11/75C/R2) (1)
	Rous sarcoma virus - Prague C (1)
	unidentified influenza virus (1)

Taxonomy

	Eukaryota (30)
	Riboviria (15)
	Eukaryota (eukaryotes) (2)
	environmental samples (2)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (29)
	SOLUTION NMR (10)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (41)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (6)
	2.5 - 3.0 (12)
	3.0 - 3.5 (4)
	> 4.5 (2)

Release Date

	1995 - 1999 (13)
	2005 - 2009 (2)
	2010 - 2014 (5)
	2015 - 2019 (12)
	2020 - 2024 (9)

Enzyme Classification Name

	Transferases (5)
	Hydrolases (4)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (29)
	Cyclic (12)

SCOP Classification

	All beta proteins (11)
	Coiled coil proteins (7)
	Alpha and beta proteins (a+b) (11)
	Artifacts (5)
	Peptides (2)

AllSelected

1 to 25 of 41 Structures

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1AVV \| pdb_00001avv	Download File View File

HIV-1 NEF PROTEIN, UNLIGANDED CORE DOMAIN

Arold, S., Franken, P., Dumas, C.

(1997) Structure 5: 1361-1372

Released	1998-03-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	NEGATIVE FACTOR (protein)

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1AVZ \| pdb_00001avz	Download File View File

V-1 NEF PROTEIN IN COMPLEX WITH WILD TYPE FYN SH3 DOMAIN

Arold, S., Franken, P., Dumas, C.

(1997) Structure 5: 1361-1372

Released	1998-03-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	FYN TYROSINE KINASE (protein) NEGATIVE FACTOR (protein)

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1EFN \| pdb_00001efn	Download File View File

HIV-1 NEF PROTEIN IN COMPLEX WITH R96I MUTANT FYN SH3 DOMAIN

Lee, C.-H., Kuriyan, J.

(1996) Cell 85: 931-942

Released	1997-01-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	FYN TYROSINE KINASE (protein) HIV-1 NEF PROTEIN (protein)
Unique Ligands	PBM

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1QA4 \| pdb_00001qa4	Download File View File

HIV-1 NEF ANCHOR DOMAIN, NMR, 2 STRUCTURES

Geyer, M., Kalbitzer, H.R.

(1999) J Mol Biology 289: 123-138

Released	1999-05-26
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	Protein Nef (protein)

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1QA5 \| pdb_00001qa5	Download File View File

MYRISTOYLATED HIV-1 NEF ANCHOR DOMAIN, NMR, 2 STRUCTURES

Geyer, M., Kalbitzer, H.R.

(1999) J Mol Biology 289: 123-138

Released	1999-05-26
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	PROTEIN (MYRISTOYLATED HIV-1 NEF ANCHOR DOMAIN (MYRISTATE-GLY2 TO TRP57)) (protein)

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1QBZ \| pdb_00001qbz	Download File View File

THE CRYSTAL STRUCTURE OF THE SIV GP41 ECTODOMAIN AT 1.47 A

Yang, Z.-N., Mueser, T.C., Kaufman, J., Stahl, S.J., Wingfield, P.T., Hyde, C.C.

(1999) J Struct Biol 126: 131-144

Released	1999-05-17
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Simian immunodeficiency virus
Macromolecule	PROTEIN (SIV GP41 ECTODOMAIN) (protein)
Unique Ligands	CL, HG, MRD

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1QCE \| pdb_00001qce	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, RESTRAINED REGULARIZED MEAN STRUCTURE PLUS 29 SIMULATED ANNEALING STRUCTURES

Clore, G.M.

(1999) J Am Chem Soc 121: 2337-2338

Released	1999-07-18
Method	SOLUTION NMR
Organisms	Simian immunodeficiency virus
Macromolecule	PROTEIN (GP41) (protein)

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2EZO \| pdb_00002ezo	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, RESTRAINED REGULARIZED MEAN STRUCTURE

Caffrey, M., Gronenborn, A.M., Clore, G.M.

(1998) EMBO J 17: 4572-4584

Released	1998-10-14
Method	SOLUTION NMR
Organisms	Simian immunodeficiency virus
Macromolecule	GP41 (protein)

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2EZP \| pdb_00002ezp	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, MODELS 1-10 OF AN ENSEMBLE OF 40 SIMULATED ANNEALING STRUCTURES

Caffrey, M., Gronenborn, A.M., Clore, G.M.

(1998) EMBO J 17: 4572-4584

Released	1998-10-14
Method	SOLUTION NMR
Organisms	Simian immunodeficiency virus
Macromolecule	GP41 (protein)

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2EZQ \| pdb_00002ezq	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, MODELS 11-20 OF AN ENSEMBLE OF 40 SIMULATED ANNEALING STRUCTURES

Caffrey, M., Gronenborn, A.M., Clore, G.M.

(1998) EMBO J 17: 4572-4584

Released	1998-10-14
Method	SOLUTION NMR
Organisms	Simian immunodeficiency virus
Macromolecule	GP41 (protein)

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2EZR \| pdb_00002ezr	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, MODELS 21-30 OF AN ENSEMBLE OF 40 SIMULATED ANNEALING STRUCTURES

Caffrey, M., Gronenborn, A.M., Clore, G.M.

(1998) EMBO J 17: 4572-4584

Released	1998-10-14
Method	SOLUTION NMR
Organisms	Simian immunodeficiency virus
Macromolecule	GP41 (protein)

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2EZS \| pdb_00002ezs	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, MODELS 31-40 OF AN ENSEMBLE OF 40 SIMULATED ANNEALING STRUCTURES

Caffrey, M., Gronenborn, A.M., Clore, G.M.

(1998) EMBO J 17: 4572-4584

Released	1998-10-14
Method	SOLUTION NMR
Organisms	Simian immunodeficiency virus
Macromolecule	GP41 (protein)

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2MIM \| pdb_00002mim	Download File View File

NMR structure of the chicken CD3 epsilon delta/gamma heterodimer

Headey, S., Berry, R., Rossjohn, J.

(2014) J Biological Chem 289: 8240-8251

Released	2014-02-12
Method	SOLUTION NMR
Organisms	Gallus gallus
Macromolecule	CD3 epsilon protein,CD3 glycoprotein (protein)

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2NEF \| pdb_00002nef	Download File View File

HIV-1 NEF (REGULATORY FACTOR), NMR, 40 STRUCTURES

Grzesiek, S., Bax, A., Clore, G.M., Gronenborn, A.M., Hu, J.S., Kaufman, J., Palmer, I., Stahl, S.J., Tjandra, N., Wingfield, P.T.

(1997) Protein Sci 6: 1248-1263

Released	1997-07-07
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 BH10
Macromolecule	NEGATIVE FACTOR (F-PROTEIN) (protein)

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2YEZ \| pdb_00002yez	Download File View File

COMPLEX OF A B21 CHICKEN MHC CLASS I MOLECULE AND A 10MER CHICKEN PEPTIDE

Chappell, P., Roversi, P., Harrison, M.C., Mears, L.E., Kaufman, J.F., Lea, S.M.

(2015) Elife 4: e05345-e05345

Released	2012-04-11
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Gallus gallus
Macromolecule	14-3-3 PROTEIN THETA (protein) BETA-2-MICROGLOBULIN (protein) MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I GLYCOPROTEIN HAPLOTYPE B21 (protein)

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3BEV \| pdb_00003bev	Download File View File

11mer Structure of an MHC class I molecule from B21 chickens illustrate promiscuous peptide binding

Koch, M., Kaufman, J., Jones, Y.

(2007) Immunity 27: 885-899

Released	2008-01-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Gallus gallus
Macromolecule	Beta-2-microglobulin (protein) Hemoglobin subunit alpha-A (protein) Major histocompatibility complex class I glycoprotein haplotype B21 (protein)

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3BEW \| pdb_00003bew	Download File View File

10mer Crystal Structure of chicken MHC class I haplotype B21

Koch, M., Camp, S., Collen, T., Avila, D., Salomonsen, J., Wallny, H.J., van Hateren, A., Hunt, L., Jacob, J.P., Johnston, F., Marston, D.A., Shaw, I., Dunbar, P.R., Cerundolo, V., Jones, E.Y., Kaufman, J.

(2007) Immunity 27: 885-899

Released	2008-01-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Gallus gallus
Macromolecule	10-mer from Tubulin beta-6 chain (protein) Beta-2-microglobulin (protein) Major histocompatibility complex class I glycoprotein haplotype B21 (protein)

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4CVX \| pdb_00004cvx	Download File View File

COMPLEX OF A B2 CHICKEN MHC CLASS I MOLECULE AND A 9MER CHICKEN PEPTIDE

Chappell, P.E., Roversi, P., Harrison, M.C., Mears, L.E., Kaufman, J.F., Lea, S.M.

(2015) Elife 4: e05345-e05345

Released	2015-05-06
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Gallus gallus
Macromolecule	BETA-2-MICROGLOBULIN (protein) MHC CLASS I ALPHA CHAIN 2 (protein) SELF-PEPTIDE (protein)

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4CVZ \| pdb_00004cvz	Download File View File

COMPLEX OF A B21 CHICKEN MHC CLASS I MOLECULE AND A 10MER CHICKEN PEPTIDE

Chappell, P.E., Roversi, P., Harrison, M.C., Mears, L.E., Kaufman, J.F., Lea, S.M.

(2015) Elife 4: e05345-e05345

Released	2015-05-06
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Gallus gallus
Macromolecule	BETA-2-MICROGLOBULIN (protein) MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I GLYCOPROTEIN HAPLOTYPE B21 (protein) PEPTIDE (protein)
Unique Ligands	EDO

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4CW1 \| pdb_00004cw1	Download File View File

COMPLEX OF A B14 CHICKEN MHC CLASS I MOLECULE AND A 9MER CHICKEN PEPTIDE

Chappell, P.E., Roversi, P., Harrison, M.C., Mears, L.E., Kaufman, J.F., Lea, S.M.

(2015) Elife 4: e05345-e05345

Released	2015-05-06
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Gallus gallus
Macromolecule	BETA-2-MICROGLOBULIN (protein) MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I GLYCOPROTEIN HAPLOTYPE B14 (protein) PEPTIDE (protein)

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4D0B \| pdb_00004d0b	Download File View File

COMPLEX OF A B21 CHICKEN MHC CLASS I MOLECULE AND A 10MER CHICKEN PEPTIDE

Chappell, P.E., Roversi, P., Harrison, M.C., Mears, L.E., Kaufman, J.F., Lea, S.M.

(2015) Elife 4: e05345-e05345

Released	2015-05-06
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Gallus gallus
Macromolecule	BETA-2-MICROGLOBULIN (protein) MHC CLASS I ANTIGEN (protein) PEPTIDE (protein)

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4D0C \| pdb_00004d0c	Download File View File

COMPLEX OF A B21 CHICKEN MHC CLASS I MOLECULE AND A 10MER CHICKEN PEPTIDE

Chappell, P.E., Roversi, P., Harrison, M.C., Mears, L.E., Kaufman, J.F., Lea, S.M.

(2015) Elife 4: e05345-e05345

Released	2015-05-06
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Gallus gallus
Macromolecule	10MER PEPTIDE (protein) BETA-2-MICROGLOBULIN (protein) MHC CLASS I ALPHA CHAIN 2 (protein)
Unique Ligands	EDO

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4D0D \| pdb_00004d0d	Download File View File

COMPLEX OF A B2 CHICKEN MHC CLASS I MOLECULE AND A 8MER CHICKEN PEPTIDE

Chappell, P.E., Roversi, P., Harrison, M.C., Mears, L.E., Kaufman, J.F., Lea, S.M.

(2015) Elife 4: e05345-e05345

Released	2015-05-06
Method	X-RAY DIFFRACTION 3.13 Å
Organisms	Gallus gallus
Macromolecule	BETA-2-MICROGLOBULIN (protein) MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I GLYCOPROTEIN HAPLOTYPE B2 (protein) SLP-76 ADAPTOR PROTEIN (protein)

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4E0R \| pdb_00004e0r	Download File View File

Structure of the chicken MHC class I molecule BF2*0401

Zhang, J., Chen, Y., Qi, J., Gao, F., Kaufman, J., Xia, C., Gao, G.F.

(2012) J Immunol 189: 4478-4487

Released	2012-11-21
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Gallus gallus
Macromolecule	8-MERIC PEPTIDE (FUS/TLS) (protein) Beta-2 microglobulin (protein) MHC class I alpha chain 2 (protein)

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4G42 \| pdb_00004g42	Download File View File

Structure of the Chicken MHC Class I Molecule BF2*0401 complexed to pepitde P8D

Zhang, J., Chen, Y., Qi, J., Gao, F., Liu, J., Kaufman, J., Xia, C., Gao, G.F.

(2012) J Immunol 189: 4478-4487

Released	2012-11-21
Method	X-RAY DIFFRACTION 2.294 Å
Organisms	Gallus gallus
Macromolecule	8-MERIC PEPTIDE P8D (protein) Beta-2 microglobulin (protein) MHC class I alpha chain 2 (protein)

1 to 25 of 41 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AVV | pdb_00001avv

1AVZ | pdb_00001avz

1EFN | pdb_00001efn

1QA4 | pdb_00001qa4

1QA5 | pdb_00001qa5

1QBZ | pdb_00001qbz

1QCE | pdb_00001qce

2EZO | pdb_00002ezo

2EZP | pdb_00002ezp

2EZQ | pdb_00002ezq

2EZR | pdb_00002ezr

2EZS | pdb_00002ezs

2MIM | pdb_00002mim

2NEF | pdb_00002nef

2YEZ | pdb_00002yez

3BEV | pdb_00003bev

3BEW | pdb_00003bew

4CVX | pdb_00004cvx

4CVZ | pdb_00004cvz

4CW1 | pdb_00004cw1

4D0B | pdb_00004d0b

4D0C | pdb_00004d0c

4D0D | pdb_00004d0d

4E0R | pdb_00004e0r

4G42 | pdb_00004g42