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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Peng, X."

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Search Summary

This query matches 165 Structures.

Refinements

Structure Determination Methodology

experimental (165)

Scientific Name of Source Organism

	Homo sapiens (49)
	Enterovirus A71 (12)
	Mus musculus (10)
	Severe acute respiratory syndrome coronavirus 2 (10)
	Lactiplantibacillus plantarum (8)
	Equus caballus (7)
	synthetic construct (7)
	Saccharolobus solfataricus P2 (6)
	Escherichia coli (5)
	Pyrobaculum spherical virus (5)

More...

Taxonomy

	Eukaryota (74)
	Bacteria (52)
	Riboviria (30)
	Adnaviria (8)
	Archaea (8)
	other sequences (7)
	Viruses incertae sedis (5)
	unclassified sequences (5)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (135)
	ELECTRON MICROSCOPY (30)

Polymer Entity Type

	Protein (139)
	RNA (29)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (14)
	1.5 - 2.0 (42)
	2.0 - 2.5 (52)
	2.5 - 3.0 (26)
	3.0 - 3.5 (11)
	3.5 - 4.0 (8)
	4.0 - 4.5 (4)
	> 4.5 (8)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (11)
	2010 - 2014 (48)
	2015 - 2019 (33)
	2020 - 2024 (50)
	2025 - 2029 (19)

Enzyme Classification Name

	Hydrolases (23)
	Transferases (16)
	Oxidoreductases (4)
	Isomerases (2)
	Lyases (2)
	Ligases (1)

Membrane Protein Annotation

	MemProtMD (6)
	PDBTM (6)
	OPM (5)
	mpstruc (1)

Symmetry Type

	Asymmetric (76)
	Cyclic (47)
	Dihedral (11)
	Octahedral (7)
	Icosahedral (2)

SCOP Classification

	All beta proteins (19)
	Alpha and beta proteins (a+b) (16)
	Artifacts (16)
	Alpha and beta proteins (a/b) (6)
	Low resolution protein structures (2)
	Multi-domain proteins (alpha and beta) (1)
	All alpha proteins (1)

AllSelected

1 to 25 of 165 Structures

Page 1 of 7

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1DGI \| pdb_00001dgi	Download File View File

Cryo-EM structure of human poliovirus(serotype 1)complexed with three domain CD155

He, Y., Bowman, V.D., Mueller, S., Bator, C.M., Bella, J., Peng, X., Baker, T.S., Wimmer, E., Kuhn, R.J., Rossmann, M.G.

(2000) Proc Natl Acad Sci U S A 97: 79-84

Released	2000-01-24
Method	ELECTRON MICROSCOPY 22 Å
Organisms	Homo sapiens Poliovirus 1
Macromolecule	POLIOVIRUS RECEPTOR (protein) VP1 (protein) VP2 (protein) VP3 (protein) VP4 (protein)

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1NN8 \| pdb_00001nn8	Download File View File

CryoEM structure of poliovirus receptor bound to poliovirus

He, Y., Mueller, S., Chipman, P.R., Bator, C.M., Peng, X., Bowman, V.D., Mukhopadhyay, S., Wimmer, E., Kuhn, R.J., Rossmann, M.G.

(2003) J Virol 77: 4827-4835

Released	2004-01-27
Method	ELECTRON MICROSCOPY 15 Å
Organisms	Homo sapiens Human poliovirus 1 Mahoney
Macromolecule	coat protein VP1 (protein) coat protein VP2 (protein) coat protein VP3 (protein) coat protein VP4 (protein) poliovirus receptor (protein)
Unique Ligands	MYR

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1P5T \| pdb_00001p5t	Download File View File

Crystal Structure of Dok1 PTB Domain

Shi, N., Ye, S., Liu, Y., Zhou, W., Ding, Y., Lou, Z., Qiang, B., Yuan, J., Rao, Z.

(2004) J Biological Chem 279: 4962-4969

Released	2004-02-17
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Mus musculus
Macromolecule	Docking protein 1 (protein)

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1UEF \| pdb_00001uef	Download File View File

Crystal Structure of Dok1 PTB Domain Complex

Shi, N., Ye, S., Liu, Y., Zhou, W., Ding, Y., Lou, Z., Qiang, B., Yan, J., Rao, Z.

(2004) J Biological Chem 279: 4962-4969

Released	2004-05-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	13-mer peptide from Proto-oncogene tyrosine-protein kinase receptor ret (protein) Docking protein 1 (protein)

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1Z9M \| pdb_00001z9m	Download File View File

Crystal Structure of Nectin-like molecule-1 protein Domain 1

Dong, X., Xu, F., Gong, Y., Gao, J., Lin, P., Chen, T., Peng, Y., Qiang, B., Yuan, J., Peng, X., Rao, Z.

(2006) J Biological Chem 281: 10610-10617

Released	2006-02-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	GAPA225 (protein)

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2FQD \| pdb_00002fqd	Download File View File

Crystal Structures of E. coli Laccase CueO under different copper binding situations

Li, X., Wei, Z., Zhang, M., Teng, M., Gong, W.

(2007) Biochem Biophys Res Commun 354: 21-26

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	Blue copper oxidase cueO (protein)
Unique Ligands	C2O, CIT, CU

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2FQE \| pdb_00002fqe	Download File View File

Crystal Structures of E. coli Laccase CueO under different copper binding situations

Li, X., Wei, Z., Zhang, M., Teng, M., Gong, W.

(2007) Biochem Biophys Res Commun 354: 21-26

Released	2007-01-30
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Escherichia coli
Macromolecule	Blue copper oxidase cueO (protein)
Unique Ligands	C2O, CIT, CU, NA

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2FQF \| pdb_00002fqf	Download File View File

Crystal Structures of E. coli Laccase CueO under different copper binding situations

Li, X., Wei, Z., Zhang, M., Teng, M., Gong, W.

(2007) Biochem Biophys Res Commun 354: 21-26

Released	2007-01-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Blue copper oxidase cueO (protein)
Unique Ligands	C2O, CIT, CU

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2FQG \| pdb_00002fqg	Download File View File

Crystal Structures of E. coli Laccase CueO under different copper binding situations

Li, X., Wei, Z., Zhang, M., Teng, M., Gong, W.

(2007) Biochem Biophys Res Commun 354: 21-26

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Blue copper oxidase cueO (protein)
Unique Ligands	C2O, CIT, CU, NA, PGE

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2IVY \| pdb_00002ivy	Download File View File

Crystal structure of hypothetical protein sso1404 from Sulfolobus solfataricus P2

Yan, X., Carter, L.G., Dorward, M., Liu, H., McMahon, S.A., Oke, M., Powers, H., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2006-06-28
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	HYPOTHETICAL PROTEIN SSO1404 (protein)

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2JG5 \| pdb_00002jg5	Download File View File

CRYSTAL STRUCTURE OF A PUTATIVE PHOSPHOFRUCTOKINASE FROM STAPHYLOCOCCUS AUREUS

Yan, X., Carter, L.G., Johnson, K.A., Liu, H., Dorward, M., McMahon, S.A., Oke, M., Powers, H., Coote, P.J., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2007-02-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus
Macromolecule	FRUCTOSE 1-PHOSPHATE KINASE (protein)

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2JG6 \| pdb_00002jg6	Download File View File

CRYSTAL STRUCTURE OF A 3-METHYLADENINE DNA GLYCOSYLASE I FROM STAPHYLOCOCCUS AUREUS

Yan, X., Carter, L.G., Liu, H., Dorward, M., McMahon, S.A., Johnson, K.A., Oke, M., Coote, P.J., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2007-02-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Staphylococcus aureus
Macromolecule	DNA-3-METHYLADENINE GLYCOSIDASE (protein)
Unique Ligands	ZN

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2VW8 \| pdb_00002vw8	Download File View File

Crystal Structure of Quinolone signal response protein pqsE from Pseudomonas aeruginosa

Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., Oke, M., Naismith, J.H., White, M.F.

(2010) J Struct Funct Genomics 11: 167

Released	2010-07-14
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	PA1000 (protein)
Unique Ligands	CAC, EDO, FE2

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2VXZ \| pdb_00002vxz	Download File View File

Crystal Structure of hypothetical protein PyrSV_gp04 from Pyrobaculum spherical virus

Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., Oke, M., Naismith, J.H., White, M.F.

(2010) J Struct Funct Genomics 11: 167

Released	2009-11-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pyrobaculum spherical virus
Macromolecule	PYRSV_GP04 (protein)
Unique Ligands	CL, GOL

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2WJ9 \| pdb_00002wj9	Download File View File

ArdB

Weikart, N.D., Roberts, G., Johnson, K.A., Oke, M., Cooper, L.P., McMahon, S.A., White, J.H., Liu, H., Carter, L.G., Walkinshaw, M.D., Blakely, G.W., Naismith, J.H., Dryden, D.T.F.

(2010) J Struct Funct Genomics 11: 167

Released	2010-08-18
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Escherichia coli CFT073
Macromolecule	INTERGENIC-REGION PROTEIN (protein)
Unique Ligands	BME, CL, MPD, SO4

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2X0O \| pdb_00002x0o	Download File View File

Apo structure of the Alcaligin biosynthesis protein C (AlcC) from Bordetella bronchiseptica

Johnson, K.A., Schmelz, S., Kadi, N., Mcmahon, S.A., Oke, M., Liu, H., Carter, L.G., White, M.F., Challis, G.L., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2010-07-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bordetella bronchiseptica
Macromolecule	ALCALIGIN BIOSYNTHESIS PROTEIN (protein)
Unique Ligands	SO4

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2X3D \| pdb_00002x3d	Download File View File

Crystal Structure of SSo6206 from Sulfolobus solfataricus P2

Oke, M., Carter, L.G., Johnson, K.A., Liu, H., McMahon, S.A., McEwan, A.R., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167-180

Released	2010-07-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	SSO6206 (protein)

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2X3E \| pdb_00002x3e	Download File View File

Crystal structure of 3-oxoacyl-(acyl carrier protein) synthase III, FabH from Pseudomonas aeruginosa PAO1

Oke, M., Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2010-07-28
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 3 (protein)

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2X3F \| pdb_00002x3f	Download File View File

Crystal Structure of the Methicillin-Resistant Staphylococcus aureus Sar2676, a Pantothenate Synthetase.

Oke, M., Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2010-07-21
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	PANTHOTHENATE SYNTHETASE (protein)
Unique Ligands	APC, SO4

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2X3G \| pdb_00002x3g	Download File View File

Crystal Structure of the hypothetical protein ORF119 from Sulfolobus islandicus rod-shaped virus 1

Oke, M., Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2010-07-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sulfolobus islandicus rudivirus 1 variant XX
Macromolecule	SIRV1 HYPOTHETICAL PROTEIN ORF119 (protein)

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2X3L \| pdb_00002x3l	Download File View File

Crystal Structure of the Orn_Lys_Arg decarboxylase family protein SAR0482 from Methicillin-resistant Staphylococcus aureus

Oke, M., Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2010-07-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Staphylococcus aureus
Macromolecule	ORN/LYS/ARG DECARBOXYLASE FAMILY PROTEIN (protein)
Unique Ligands	EDO, PLP, SM

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2X3M \| pdb_00002x3m	Download File View File

Crystal Structure of Hypothetical Protein ORF239 from Pyrobaculum Spherical Virus

Oke, M., Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2011-02-16
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Pyrobaculum spherical virus
Macromolecule	HYPOTHETICAL PROTEIN ORF239 (protein)

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2X3N \| pdb_00002x3n	Download File View File

Crystal structure of pqsL, a probable FAD-dependent monooxygenase from Pseudomonas aeruginosa

Oke, M., Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2010-07-21
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	PROBABLE FAD-DEPENDENT MONOOXYGENASE (protein)
Unique Ligands	FAD

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2X3O \| pdb_00002x3o	Download File View File

Crystal Structure of the Hypothetical Protein PA0856 from Pseudomonas aeruginosa

Oke, M., Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2010-07-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	HYPOTHETICAL PROTEIN PA0856 (protein)
Unique Ligands	CL, GOL