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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Sanchez-Navarro, M."

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Search Summary

This query matches 273 Structures.

Refinements

Structure Determination Methodology

experimental (273)

Scientific Name of Source Organism

	Homo sapiens (79)
	Plasmodium falciparum (36)
	Plasmodium falciparum 3D7 (22)
	Listeria monocytogenes EGD-e (21)
	Plasmodium vivax Sal-1 (21)
	Salmonella enterica subsp. enterica serovar Typhimurium (16)
	Mus musculus (14)
	Legionella pneumophila (11)
	Plasmodium vivax (9)
	Shigella flexneri (8)

More...

Taxonomy

	Eukaryota (160)
	Bacteria (131)
	Riboviria (12)
	other sequences (6)
	Duplodnaviria (2)
	unclassified bacterial viruses (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (226)
	ELECTRON MICROSCOPY (30)
	SOLUTION NMR (17)

Polymer Entity Type

	Protein (273)
	DNA (3)
	NA-hybrid (2)
	RNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (11)
	1.5 - 2.0 (60)
	2.0 - 2.5 (80)
	2.5 - 3.0 (44)
	3.0 - 3.5 (40)
	3.5 - 4.0 (9)
	4.0 - 4.5 (1)
	> 4.5 (10)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (34)
	2010 - 2014 (59)
	2015 - 2019 (70)
	2020 - 2024 (104)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (28)
	Transferases (9)
	Isomerases (5)
	Oxidoreductases (2)

Membrane Protein Annotation

	mpstruc (5)
	MemProtMD (5)
	OPM (4)
	PDBTM (4)

Symmetry Type

	Asymmetric (211)
	Cyclic (67)
	Helical (4)
	Dihedral (1)

SCOP Classification

	All beta proteins (32)
	Artifacts (21)
	All alpha proteins (26)
	Alpha and beta proteins (a/b) (19)
	Alpha and beta proteins (a+b) (12)
	Membrane and cell surface proteins and peptides (5)
	Small proteins (1)

AllSelected

1 to 25 of 273 Structures

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1O6T \| pdb_00001o6t	Download File View File

Internalin (INLA, Listeria monocytogenes) - functional domain, uncomplexed

Schubert, W.-D., Urbanke, C., Ziehm, T., Beier, V., Machner, M.P., Domann, E., Wehland, J., Chakraborty, T., Heinz, D.W.

(2002) Cell 111: 825

Released	2002-12-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Listeria monocytogenes EGD-e
Macromolecule	INTERNALIN A (protein)
Unique Ligands	CA, CL, MES, MG, SO4

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1Q5Z \| pdb_00001q5z	Download File View File

Crystal Structure of the C-terminal Actin Binding Domain of Salmonella Invasion Protein A (SipA)

Stebbins, C.E., Lilic, M., Galkin, V.E., Orlova, A., VanLoock, M.S., Egelman, E.H.

(2003) Science 301: 1918-1921

Released	2003-10-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	SipA (protein)

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1R6E \| pdb_00001r6e	Download File View File

Solution structure of the catalytic domain of SopE2

Williams, C., Galyov, E.E., Bagby, S.

(2004) Biochemistry 43: 11998-12008

Released	2004-09-24
Method	SOLUTION NMR
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	TypeIII-secreted protein effector: invasion-associated protein (protein)

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1R9K \| pdb_00001r9k	Download File View File

Representative solution structure of the catalytic domain of SopE2

Williams, C., Galyov, E.E., Bagby, S.

(2004) Biochemistry 43: 11998-12008

Released	2004-09-28
Method	SOLUTION NMR
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	TypeIII-secreted protein effector: invasion-associated protein (protein)

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1XEU \| pdb_00001xeu	Download File View File

Crystal Structure of Internalin C from Listeria monocytogenes

Ooi, A., Hussain, S., Seyedarabi, A., Pickersgill, R.W.

(2006) Acta Crystallogr D Biol Crystallogr 62: 1287-1293

Released	2005-08-30
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Listeria monocytogenes
Macromolecule	internalin C (protein)

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1XL3 \| pdb_00001xl3	Download File View File

Complex structure of Y.pestis virulence Factors YopN and TyeA

Schubot, F.D., Jackson, M.W., Penrose, K.J., Cherry, S., Tropea, J.E., Plano, G.V., Waugh, D.S.

(2005) J Mol Biology 346: 1147-1161

Released	2005-03-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Yersinia pestis
Macromolecule	Secretion control protein (protein) protein type A (protein)

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1Z21 \| pdb_00001z21	Download File View File

Crystal structure of the core domain of Yersinia pestis virulence factor YopR

Schubot, F.D., Cherry, S., Tropea, J.E., Austin, B.P., Waugh, D.S.

(2005) Protein Sci 14: 1679-1683

Released	2005-06-07
Method	X-RAY DIFFRACTION 1.499 Å
Organisms	Yersinia pestis
Macromolecule	Yop proteins translocation protein H (protein)

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1ZRL \| pdb_00001zrl	Download File View File

Crystal structure of EBA-175 Region II (RII)

Tolia, N.H., Enemark, E.J., Sim, B.K., Joshua-Tor, L.

(2005) Cell 122: 183-193

Released	2005-08-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Plasmodium falciparum
Macromolecule	erythrocyte binding antigen region II (protein)
Unique Ligands	CL, SO4

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1ZRO \| pdb_00001zro	Download File View File

Crystal structure of EBA-175 Region II (RII) crystallized in the presence of (alpha)2,3-sialyllactose

Tolia, N.H., Enemark, E.J., Sim, B.K., Joshua-Tor, L.

(2005) Cell 122: 183-193

Released	2005-08-09
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Plasmodium falciparum
Macromolecule	erythrocyte binding antigen region II (protein)
Unique Ligands	CL, SO4

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2AXW \| pdb_00002axw	Download File View File

Structure of DraD invasin from uropathogenic Escherichia coli

Jedrzejczak, R., Dauter, Z., Dauter, M., Piatek, R., Zalewska, B., Mroz, M., Bury, K., Nowicki, B., Kur, J.

(2006) Acta Crystallogr D Biol Crystallogr 62: 157-164

Released	2005-11-01
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Escherichia coli
Macromolecule	DraD invasin (protein)
Unique Ligands	CL, GOL

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2D1X \| pdb_00002d1x	Download File View File

The crystal structure of the cortactin-SH3 domain and AMAP1-peptide complex

Hashimoto, S., Hirose, M., Hashimoto, A., Morishige, M., Yamada, A., Hosaka, H., Akagi, K., Ogawa, E., Oneyama, C., Agatsuma, T., Okada, M., Kobayashi, H., Wada, H., Nakano, H., Ikegami, T., Nakagawa, A., Sabe, H.

(2006) Proc Natl Acad Sci U S A 103: 7036-7041

Released	2006-04-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	cortactin isoform a (protein) proline rich region from development and differentiation enhancing factor 1 (protein)
Unique Ligands	SO4

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2FM9 \| pdb_00002fm9	Download File View File

Structure of Salmonella SipA residues 48-264

Lilic, M., Vujanac, M., Stebbins, C.E.

(2006) Mol Cell 21: 653-664

Released	2006-03-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Cell invasion protein sipA (protein)

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2GDC \| pdb_00002gdc	Download File View File

Structure of Vinculin VD1 / IpaA560-633 complex

Hamiaux, C., van Eerde, A., Parsot, C., Broos, J., Dijkstra, B.W.

(2006) EMBO Rep 7: 794-799

Released	2006-08-08
Method	X-RAY DIFFRACTION 2.74 Å
Organisms	Gallus gallus Shigella flexneri
Macromolecule	Invasin ipaA (protein) Vinculin (protein)

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2J0N \| pdb_00002j0n	Download File View File

A proteolytically truncated form of Shigella Flexneri IpaD

Johnson, S., Roversi, P., Lea, S.M.

(2007) J Biological Chem 282: 4035-4044

Released	2006-11-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Shigella flexneri 2a str. 301
Macromolecule	INVASIN IPAD (protein)

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2J0O \| pdb_00002j0o	Download File View File

Shigella Flexneri IpaD

Johnson, S., Roversi, P., Lea, S.M.

(2007) J Biological Chem 282: 4035-4044

Released	2006-11-02
Method	X-RAY DIFFRACTION 3 Å
Organisms	Shigella flexneri 2a str. 301
Macromolecule	INVASIN IPAD (protein)
Unique Ligands	GOL

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2JAA \| pdb_00002jaa	Download File View File

SeMet substituted Shigella Flexneri Ipad

Johnson, S., Roversi, P., Espina, M., Olive, A., Deane, J.E., Birket, S., Field, T., Picking, W.D., Blocker, A.J., Galyov, E.E., Picking, W.L., Lea, S.M.

(2007) J Biological Chem 282: 4035

Released	2006-11-30
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Shigella flexneri
Macromolecule	INVASIN IPAD (protein)

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2LUD \| pdb_00002lud	Download File View File

Solution structure of a conformational mutant of the adhesion protein delta-Bd37 from Babesia divergens

Murciano, B., Barthe, P., Delbecq, S., Roumestand, C.

To be published

Released	2013-06-12
Method	SOLUTION NMR
Organisms	Babesia divergens
Macromolecule	Glycosylphosphatidylinositol-anchored merozoite surface protein (protein)

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2MKY \| pdb_00002mky	Download File View File

Structure of the PrgK first periplasmic domain

Bergeron, J., Mcintosh, L., Strynadka, N.

(2015) Structure 23: 161-172

Released	2014-10-29
Method	SOLUTION NMR
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. DT2
Macromolecule	Pathogenicity 1 island effector protein (protein)

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2MSA \| pdb_00002msa	Download File View File

Structural and immunological analysis of circumsporozoite protein peptides: a further step in the identification of potential components of a minimal subunit-based, chemically synthesised antimalarial vaccine.

Adriana, B., Magnolia, V., Manuel, P.E.

(2008) Vaccine 26: 6908-6918

Released	2014-09-03
Method	SOLUTION NMR
Organisms	Plasmodium falciparum
Macromolecule	Circumsporozoite protein peptide (protein)

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2MU7 \| pdb_00002mu7	Download File View File

Shortening and modifying the 1513 MSP-1 peptide's alpha-helical region induces protection against malaria

Espejo, F., Bermudez, A., Torres, E., Urquiza, M., Rodriguez, R., Lopez, Y., Patarroyo, M.

(2004) Biochem Biophys Res Commun 315: 418-427

Released	2014-11-12
Method	SOLUTION NMR
Organisms	Plasmodium falciparum
Macromolecule	1513 MSP-1 peptide (protein)

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2MU8 \| pdb_00002mu8	Download File View File

Residues belonging the n-terminal region derived of merozoite surface protein-2 of plasmodium falciparum

Cifuentes, G., Patarroyo, M.E., Urquiza, M., Ramirez, L.E., Reyes, C., Rodriguez, R.

(2003) J Med Chem 46: 2250-2253

Released	2014-11-12
Method	SOLUTION NMR
Organisms	Plasmodium falciparum
Macromolecule	MSP-2 peptide (protein)

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2MUE \| pdb_00002mue	Download File View File

Structure Immunogenicity and Protectivity Relationship for the 1585 Malarial Peptide and Its Substitution Analogues

Espejo, F., Cubillos, M., Salazar, L., Guzman, F., Urquiza, M., Ocampo, M., Silva, Y., Rodriguez, R., Lioy, E., Patarroyo, M.

(2001) Angew Chem Int Ed Engl 40: 4654-4657

Released	2014-10-08
Method	SOLUTION NMR
Organisms	Plasmodium falciparum
Macromolecule	Merozoite surface protein 1 (protein)

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2N5C \| pdb_00002n5c	Download File View File

Solution NMR structure of the lasso peptide chaxapeptin

Elsayed, S.S., Trusch, F., Deng, H., Raab, A., Prokes, I., Busarakam, K., Asenjo, J.A., Andrews, B.A., van West, P., Bull, A.T., Goodfellow, M., Yi, Y., Ebel, R., Jaspars, M., Rateb, M.E.

(2015) J Org Chem 80: 10252-10260

Released	2015-10-07
Method	SOLUTION NMR
Organisms	Streptomyces leeuwenhoekii
Macromolecule	chaxapeptin (protein)

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2P7N \| pdb_00002p7n	Download File View File

Crystal structure of the Pathogenicity island 1 effector protein from Chromobacterium violaceum. Northeast Structural Genomics Consortium (NESGC) target CvR69.

Benach, J., Abashidze, M., Seetharaman, J., Zhao, L., Janjua, H., Cunningham, K., Ma, L.C., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Chromobacterium violaceum
Macromolecule	Pathogenicity island 1 effector protein (protein)

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2QWU \| pdb_00002qwu	Download File View File

Crystal structure of F. tularensis pathogenicity island protein C

Sun, P., Austin, B.P., Schubot, F.D., Waugh, D.S.

To be published

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Francisella tularensis subsp. tularensis
Macromolecule	Intracellular growth locus, subunit C (protein)

1 to 25 of 273 Structures

Page 1 of 11

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1O6T | pdb_00001o6t

1Q5Z | pdb_00001q5z

1R6E | pdb_00001r6e

1R9K | pdb_00001r9k

1XEU | pdb_00001xeu

1XL3 | pdb_00001xl3

1Z21 | pdb_00001z21

1ZRL | pdb_00001zrl

1ZRO | pdb_00001zro

2AXW | pdb_00002axw

2D1X | pdb_00002d1x

2FM9 | pdb_00002fm9

2GDC | pdb_00002gdc

2J0N | pdb_00002j0n

2J0O | pdb_00002j0o

2JAA | pdb_00002jaa

2LUD | pdb_00002lud

2MKY | pdb_00002mky

2MSA | pdb_00002msa

2MU7 | pdb_00002mu7

2MU8 | pdb_00002mu8

2MUE | pdb_00002mue

2N5C | pdb_00002n5c

2P7N | pdb_00002p7n

2QWU | pdb_00002qwu