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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Sato, Y."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Homo sapiens (5)
	Enterococcus faecium (3)
	Helicobacter pylori (3)
	Enterococcus faecalis (2)
	Escherichia coli (1)
	Saccharomyces cerevisiae (1)
	Staphylococcus aureus (1)
	synthetic construct (1)

Taxonomy

	Bacteria (10)
	Eukaryota (6)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (16)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (8)
	2.0 - 2.5 (5)
	2.5 - 3.0 (2)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (10)
	2015 - 2019 (3)
	2020 - 2024 (2)

Enzyme Classification Name

	Isomerases (10)
	Hydrolases (2)
	Transferases (4)

Symmetry Type

	Cyclic (11)
	Asymmetric (5)

SCOP Classification

	Alpha and beta proteins (a/b) (1)
	Alpha and beta proteins (a+b) (3)

AllSelected

1 to 16 of 16 Structures

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1GPU \| pdb_00001gpu	Download File View File

Transketolase complex with reaction intermediate

Fiedler, E., Thorell, S., Sandalova, T., Koenig, S., Schneider, G.

(2002) Proc Natl Acad Sci U S A 99: 591

Released	2002-02-11
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	TRANSKETOLASE 1 (protein)
Unique Ligands	CA, THD

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2JFN \| pdb_00002jfn	Download File View File

Crystal structure of Escherichia coli glutamate racemase in complex with L- Glutamate and activator UDP-MurNAc-ala

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	GLU, UMA

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2JFO \| pdb_00002jfo	Download File View File

Crystal structure of Enterococcus faecalis glutamate racemase in complex with D- and L-Glutamate

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Enterococcus faecalis
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	DGL, GLU

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2JFP \| pdb_00002jfp	Download File View File

Crystal structure of Enterococcus faecalis glutamate racemase in complex with D- Glutamate

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Enterococcus faecalis
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	CA, DGL

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2JFQ \| pdb_00002jfq	Download File View File

Crystal structure of Staphylococcus aureus glutamate racemase in complex with D- Glutamate

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Staphylococcus aureus
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	DGL

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2JFU \| pdb_00002jfu	Download File View File

Crystal structure of Enterococcus faecium glutamate racemase in complex with phosphate

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterococcus faecium
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	PO4

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2JFV \| pdb_00002jfv	Download File View File

Crystal structure of Enterococcus faecium glutamate racemase in complex with citrate

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterococcus faecium
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	FLC

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2JFW \| pdb_00002jfw	Download File View File

Crystal structure of Enterococcus faecium glutamate racemase in complex with tartrate

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Enterococcus faecium
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	TLA

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2JFX \| pdb_00002jfx	Download File View File

Crystal structure of Helicobacter pylori glutamate racemase in complex with D-Glutamate

Xue, Y., Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Helicobacter pylori
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	DGL

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2JFY \| pdb_00002jfy	Download File View File

Crystal structure of Helicobacter pylori glutamate racemase in complex with D-Glutamate

Lundqvist, T.

(2007) Nature 447: 817

Released	2008-02-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Helicobacter pylori
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	DGL

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2JFZ \| pdb_00002jfz	Download File View File

Crystal structure of Helicobacter pylori glutamate racemase in complex with D-Glutamate and an inhibitor

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Helicobacter pylori
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	003, DGL

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6CPE \| pdb_00006cpe	Download File View File

Structure of apo, dephosphorylated Aurora A (122-403) in an active conformation

Otten, R., Kutter, S., Buosi, V., Padua, R.A.P., Kern, D.

(2018) Elife 7:

Released	2018-06-27
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	Aurora kinase A (protein)
Unique Ligands	P4G

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6CPF \| pdb_00006cpf	Download File View File

Structure of dephosphorylated Aurora A (122-403) bound to AMPPCP in an active conformation

Otten, R., Zorba, A., Padua, R.A.P., Kern, D.

(2018) Elife 7:

Released	2018-06-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Aurora kinase A (protein)
Unique Ligands	ACP, MG

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6CPG \| pdb_00006cpg	Download File View File

Structure of dephosphorylated Aurora A (122-403) in complex with inhibiting monobody and AT9283 in an inactive conformation

Otten, R., Kutter, S., Zorba, A., Padua, R.A.P., Koide, A., Koide, S., Kern, D.

(2018) Elife 7:

Released	2018-06-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Aurora kinase A (protein) Monobody (protein)
Unique Ligands	35R

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7N03 \| pdb_00007n03	Download File View File

Crystal structure of MTH1 in complex with compound 31

Eron, S.J.

(2021) Curr Res Chem Biol 1: 100010

Released	2021-11-03
Method	X-RAY DIFFRACTION 1.13 Å
Organisms	Homo sapiens
Macromolecule	7,8-dihydro-8-oxoguanine triphosphatase (protein)
Unique Ligands	SO4, ZRP

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7N13 \| pdb_00007n13	Download File View File

Crystal structure of MTH1 in complex with compound 32

Eron, S.J.

(2021) Curr Res Chem Biol 1: 100010

Released	2021-11-03
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Homo sapiens
Macromolecule	7,8-dihydro-8-oxoguanine triphosphatase (protein)
Unique Ligands	SO4, ZRV

1 to 16 of 16 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1GPU | pdb_00001gpu

Transketolase complex with reaction intermediate

2JFN | pdb_00002jfn

Crystal structure of Escherichia coli glutamate racemase in complex with L- Glutamate and activator UDP-MurNAc-ala

2JFO | pdb_00002jfo

Crystal structure of Enterococcus faecalis glutamate racemase in complex with D- and L-Glutamate

2JFP | pdb_00002jfp

Crystal structure of Enterococcus faecalis glutamate racemase in complex with D- Glutamate

2JFQ | pdb_00002jfq

Crystal structure of Staphylococcus aureus glutamate racemase in complex with D- Glutamate

2JFU | pdb_00002jfu

Crystal structure of Enterococcus faecium glutamate racemase in complex with phosphate

2JFV | pdb_00002jfv

Crystal structure of Enterococcus faecium glutamate racemase in complex with citrate

2JFW | pdb_00002jfw

Crystal structure of Enterococcus faecium glutamate racemase in complex with tartrate

2JFX | pdb_00002jfx

Crystal structure of Helicobacter pylori glutamate racemase in complex with D-Glutamate

2JFY | pdb_00002jfy

Crystal structure of Helicobacter pylori glutamate racemase in complex with D-Glutamate

2JFZ | pdb_00002jfz

Crystal structure of Helicobacter pylori glutamate racemase in complex with D-Glutamate and an inhibitor

6CPE | pdb_00006cpe

Structure of apo, dephosphorylated Aurora A (122-403) in an active conformation

6CPF | pdb_00006cpf

Structure of dephosphorylated Aurora A (122-403) bound to AMPPCP in an active conformation

6CPG | pdb_00006cpg

Structure of dephosphorylated Aurora A (122-403) in complex with inhibiting monobody and AT9283 in an inactive conformation

7N03 | pdb_00007n03

Crystal structure of MTH1 in complex with compound 31

7N13 | pdb_00007n13

Crystal structure of MTH1 in complex with compound 32

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1GPU | pdb_00001gpu

2JFN | pdb_00002jfn

2JFO | pdb_00002jfo

2JFP | pdb_00002jfp

2JFQ | pdb_00002jfq

2JFU | pdb_00002jfu

2JFV | pdb_00002jfv

2JFW | pdb_00002jfw

2JFX | pdb_00002jfx

2JFY | pdb_00002jfy

2JFZ | pdb_00002jfz

6CPE | pdb_00006cpe

6CPF | pdb_00006cpf

6CPG | pdb_00006cpg

7N03 | pdb_00007n03

7N13 | pdb_00007n13