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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Shimba, N."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Homo sapiens (2)
	Mus musculus (2)
	Bifidobacterium longum (1)
	Chryseobacterium proteolyticum (1)
	Cryptococcus sp. S-2 (1)
	Molineria latifolia (1)
	Shimwellia blattae (1)

Taxonomy

	Eukaryota (6)
	Bacteria (3)

Experimental Method

	X-RAY DIFFRACTION (6)
	SOLUTION NMR (3)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (2)
	2.0 - 2.5 (1)
	2.5 - 3.0 (1)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (3)
	2005 - 2009 (2)
	2010 - 2014 (2)

Enzyme Classification Name

	Hydrolases (3)
	Lyases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (6)
	Cyclic (2)
	Dihedral (1)

SCOP Classification

	All beta proteins (3)
	All alpha proteins (1)
	Alpha and beta proteins (a+b) (2)

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1 to 9 of 9 Structures

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1DLF \| pdb_00001dlf	Download File View File

HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 5.25

Nakasako, M., Takahashi, H., Shimada, I., Arata, Y.

(1999) J Mol Biology 291: 117-134

Released	1999-07-26
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Mus musculus
Macromolecule	ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S) (protein)
Unique Ligands	SO4

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1GD3 \| pdb_00001gd3	Download File View File

refined solution structure of human cystatin A

Shimba, N., Kariya, E., Tate, S., Kaji, H., Kainosho, M.

(2000) J Struct Funct Genomics 1: 26-42

Released	2001-09-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CYSTATIN A (protein)

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1GD4 \| pdb_00001gd4	Download File View File

SOLUTION STRUCTURE OF P25S CYSTATIN A

Shimba, N., Kariya, E., Tate, S., Kaji, H., Kainosho, M.

(2000) J Struct Funct Genomics 1: 26-42

Released	2001-09-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CYSTATIN A (protein)

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1IW8 \| pdb_00001iw8	Download File View File

Crystal Structure of a mutant of acid phosphatase from Escherichia blattae (G74D/I153T)

Ishikawa, K., Mihara, Y., Shimba, N., Ohtsu, N., Kawasaki, H., Suzuki, E., Asano, Y.

(2002) Protein Eng 15: 539-543

Released	2002-09-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Shimwellia blattae
Macromolecule	acid phosphatase (protein)
Unique Ligands	SO4

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2CZQ \| pdb_00002czq	Download File View File

A novel cutinase-like protein from Cryptococcus sp.

Masaki, K., Kamini, N.R., Ikeda, H., Iefuji, H., Kondo, H., Suzuki, M., Tsuda, S.

(2009) Proteins 77: 710-717

Released	2006-07-14
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Cryptococcus sp. S-2
Macromolecule	cutinase-like protein (protein)
Unique Ligands	CIT, EDO

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2DLF \| pdb_00002dlf	Download File View File

HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 6.75

Nakasako, M., Takahashi, H., Shimada, I., Arata, Y.

(1999) J Mol Biology 291: 117-134

Released	1999-12-17
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S) (HEAVY CHAIN)) (protein) PROTEIN (ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S)-KAPPA (LIGHT CHAIN)) (protein)
Unique Ligands	SO4

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2DPF \| pdb_00002dpf	Download File View File

Crystal Structure of curculin1 homodimer

Kurimoto, E., Suzuki, M., Amemiya, E., Yamaguchi, Y., Nirasawa, S., Shimba, N., Xu, N., Kashiwagi, T., Kawai, M., Suzuki, E., Kato, K.

(2007) J Biological Chem 282: 33252-33256

Released	2007-05-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Molineria latifolia
Macromolecule	Curculin (protein)
Unique Ligands	SO4

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2KSV \| pdb_00002ksv	Download File View File

The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum

Kumeta, H., Miwa, N., Ogura, K., Kai, Y., Mizukoshi, T., Shimba, N., Suzuki, E., Inagaki, F.

(2010) J Biomol NMR 46: 251-255

Released	2010-02-16
Method	SOLUTION NMR
Organisms	Chryseobacterium proteolyticum
Macromolecule	Protein-glutaminase (protein)

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3AI7 \| pdb_00003ai7	Download File View File

Crystal Structure of Bifidobacterium Longum Phosphoketolase

Takahashi, K., Tagami, U., Shimba, N., Kashiwagi, T., Ishikawa, K., Suzuki, E.

(2010) FEBS Lett 584: 3855-3861

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bifidobacterium longum
Macromolecule	Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase (protein)
Unique Ligands	CA, TPP

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1DLF | pdb_00001dlf

HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 5.25

1GD3 | pdb_00001gd3

refined solution structure of human cystatin A

1GD4 | pdb_00001gd4

SOLUTION STRUCTURE OF P25S CYSTATIN A

1IW8 | pdb_00001iw8

Crystal Structure of a mutant of acid phosphatase from Escherichia blattae (G74D/I153T)

2CZQ | pdb_00002czq

A novel cutinase-like protein from Cryptococcus sp.

2DLF | pdb_00002dlf

HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 6.75

2DPF | pdb_00002dpf

Crystal Structure of curculin1 homodimer

2KSV | pdb_00002ksv

The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum

3AI7 | pdb_00003ai7

Crystal Structure of Bifidobacterium Longum Phosphoketolase

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DLF | pdb_00001dlf

1GD3 | pdb_00001gd3

1GD4 | pdb_00001gd4

1IW8 | pdb_00001iw8

2CZQ | pdb_00002czq

2DLF | pdb_00002dlf

2DPF | pdb_00002dpf

2KSV | pdb_00002ksv

3AI7 | pdb_00003ai7