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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Shindo, H."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Homo sapiens (6)
	Escherichia coli (3)
	Mus musculus (2)
	Oryza sativa Japonica Group (2)
	Saccharomyces cerevisiae (2)

Taxonomy

	Eukaryota (12)
	Bacteria (3)

Experimental Method

	SOLUTION NMR (9)
	X-RAY DIFFRACTION (6)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (1)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (4)
	2005 - 2009 (3)
	2010 - 2014 (6)

Enzyme Classification Name

	Transferases (6)
	Hydrolases (5)
	Ligases (3)

Symmetry Type

	Asymmetric (15)
	Cyclic (4)

SCOP Classification

	Alpha and beta proteins (a+b) (8)
	All alpha proteins (4)
	Artifacts (2)
	Small proteins (1)

AllSelected

1 to 15 of 15 Structures

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1DCJ \| pdb_00001dcj	Download File View File

SOLUTION STRUCTURE OF YHHP, A NOVEL ESCHERICHIA COLI PROTEIN IMPLICATED IN THE CELL DIVISION

Katoh, E., Hatta, T., Shindo, H., Mizuno, T., Yamazaki, T.

(2000) J Mol Biology 304: 219-229

Released	2001-07-18
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	YHHP PROTEIN (protein)

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1HNR \| pdb_00001hnr	Download File View File

H-NS (DNA-BINDING DOMAIN)

Shindo, H., Iwaki, T., Ieda, R., Kurumizaka, H., Ueguchi, C., Mizuno, T., Morikawa, S., Nakamura, H., Kuboniwa, H.

(1995) FEBS Lett 360: 125-131

Released	1995-07-10
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	H-NS (protein)

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1HNS \| pdb_00001hns	Download File View File

H-NS (DNA-BINDING DOMAIN)

Shindo, H., Iwaki, T., Ieda, R., Kurumizaka, H., Ueguchi, C., Mizuno, T., Morikawa, S., Nakamura, H., Kuboniwa, H.

(1995) FEBS Lett 360: 125-131

Released	1995-07-10
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	H-NS (protein)

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1MG8 \| pdb_00001mg8	Download File View File

NMR structure of ubiquitin-like domain in murine Parkin

Tashiro, M., Okubo, S., Shimotakahara, S., Hatanaka, H., Yasuda, H., Kainosho, M., Yokoyama, S., Shindo, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) J Biomol NMR 25: 153-156

Released	2003-04-08
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Parkin (protein)

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1UHM \| pdb_00001uhm	Download File View File

Solution structure of the globular domain of linker histone homolog Hho1p from S. cerevisiae

Ono, K., Kusano, O., Shimotakahara, S., Shimizu, M., Yamazaki, T., Shindo, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) Nucleic Acids Res 31: 7199-7207

Released	2003-12-16
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Histone H1 (protein)

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1V66 \| pdb_00001v66	Download File View File

Solution structure of human p53 binding domain of PIAS-1

Okubo, S., Hara, F., Tsuchida, Y., Shimotakahara, S., Suzuki, S., Hatanaka, H., Yokoyama, S., Tanaka, H., Yasuda, H., Shindo, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 31455-31461

Released	2004-12-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Protein inhibitor of activated STAT protein 1 (protein)

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2RNN \| pdb_00002rnn	Download File View File

Solution Structure of the N-terminal SAP Domain of SUMO E3 Ligases from Saccharomyces cerevisiae

Suzuki, R., Shindo, H., Tase, A., Yamazaki, T.

(2009) Proteins 75: 336-347

Released	2008-12-30
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	E3 SUMO-protein ligase SIZ1 (protein)

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2RNO \| pdb_00002rno	Download File View File

Solution Structure of the N-terminal SAP Domain of SUMO E3 Ligases from Oryza sativa

Suzuki, R., Shindo, H., Tase, A., Yamazaki, T.

(2009) Proteins 75: 336-347

Released	2008-12-30
Method	SOLUTION NMR
Organisms	Oryza sativa Japonica Group
Macromolecule	Putative DNA-binding protein (protein)

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2RSD \| pdb_00002rsd	Download File View File

Solution structure of the plant homeodomain (PHD) of the E3 SUMO ligase Siz1 from rice

Shindo, H., Tsuchiya, W., Suzuki, R., Yamazaki, T.

(2012) FEBS Lett 586: 1783-1789

Released	2012-08-15
Method	SOLUTION NMR
Organisms	Oryza sativa Japonica Group
Macromolecule	E3 SUMO-protein ligase SIZ1 (protein)
Unique Ligands	ZN

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2ZEQ \| pdb_00002zeq	Download File View File

Crystal structure of ubiquitin-like domain of murine Parkin

Tomoo, K.

(2008) Biochim Biophys Acta 1784: 1059-1067

Released	2008-08-19
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Mus musculus
Macromolecule	E3 ubiquitin-protein ligase parkin (protein)

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3B24 \| pdb_00003b24	Download File View File

Hsp90 alpha N-terminal domain in complex with an aminotriazine fragment molecule

Fukami, T.A., Ono, N.

(2011) Bioorg Med Chem Lett 21: 5778-5783

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	B2J, MG

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3B25 \| pdb_00003b25	Download File View File

Hsp90 alpha N-terminal domain in complex with an inhibitor CH4675194

Fukami, T.A., Ono, N.

(2011) Bioorg Med Chem Lett 21: 5778-5783

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	B2K

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3B26 \| pdb_00003b26	Download File View File

Hsp90 alpha N-terminal domain in complex with an inhibitor Ro1127850

Fukami, T.A., Ono, N.

(2011) Bioorg Med Chem Lett 21: 5778-5783

Released	2011-09-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	B2L

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3B27 \| pdb_00003b27	Download File View File

Hsp90 alpha N-terminal domain in complex with an inhibitor Ro4919127

Fukami, T.A., Ono, N.

(2011) Bioorg Med Chem Lett 21: 5778-5783

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	B2T

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3B28 \| pdb_00003b28	Download File View File

Hsp90 alpha N-terminal domain in complex with an inhibitor CH5015765

Fukami, T.A., Ono, N.

(2011) Bioorg Med Chem Lett 21: 5778-5783

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	B2X, GOL, MG

1 to 15 of 15 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1DCJ | pdb_00001dcj

SOLUTION STRUCTURE OF YHHP, A NOVEL ESCHERICHIA COLI PROTEIN IMPLICATED IN THE CELL DIVISION

1HNR | pdb_00001hnr

H-NS (DNA-BINDING DOMAIN)

1HNS | pdb_00001hns

H-NS (DNA-BINDING DOMAIN)

1MG8 | pdb_00001mg8

NMR structure of ubiquitin-like domain in murine Parkin

1UHM | pdb_00001uhm

Solution structure of the globular domain of linker histone homolog Hho1p from S. cerevisiae

1V66 | pdb_00001v66

Solution structure of human p53 binding domain of PIAS-1

2RNN | pdb_00002rnn

Solution Structure of the N-terminal SAP Domain of SUMO E3 Ligases from Saccharomyces cerevisiae

2RNO | pdb_00002rno

Solution Structure of the N-terminal SAP Domain of SUMO E3 Ligases from Oryza sativa

2RSD | pdb_00002rsd

Solution structure of the plant homeodomain (PHD) of the E3 SUMO ligase Siz1 from rice

2ZEQ | pdb_00002zeq

Crystal structure of ubiquitin-like domain of murine Parkin

3B24 | pdb_00003b24

Hsp90 alpha N-terminal domain in complex with an aminotriazine fragment molecule

3B25 | pdb_00003b25

Hsp90 alpha N-terminal domain in complex with an inhibitor CH4675194

3B26 | pdb_00003b26

Hsp90 alpha N-terminal domain in complex with an inhibitor Ro1127850

3B27 | pdb_00003b27

Hsp90 alpha N-terminal domain in complex with an inhibitor Ro4919127

3B28 | pdb_00003b28

Hsp90 alpha N-terminal domain in complex with an inhibitor CH5015765

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1DCJ | pdb_00001dcj

1HNR | pdb_00001hnr

1HNS | pdb_00001hns

1MG8 | pdb_00001mg8

1UHM | pdb_00001uhm

1V66 | pdb_00001v66

2RNN | pdb_00002rnn

2RNO | pdb_00002rno

2RSD | pdb_00002rsd

2ZEQ | pdb_00002zeq

3B24 | pdb_00003b24

3B25 | pdb_00003b25

3B26 | pdb_00003b26

3B27 | pdb_00003b27

3B28 | pdb_00003b28