RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Su, X.D."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 116 Structures.

Refinements

Structure Determination Methodology

experimental (116)

Scientific Name of Source Organism

	Homo sapiens (36)
	Streptococcus mutans (17)
	Severe acute respiratory syndrome coronavirus 2 (14)
	Arabidopsis thaliana (13)
	synthetic construct (8)
	Bacillus subtilis (7)
	Caldanaerobacter subterraneus subsp. tengcongensis MB4 (5)
	Streptococcus mutans UA159 (5)
	Escherichia coli (4)
	Escherichia coli K-12 (3)

More...

Taxonomy

	Bacteria (58)
	Eukaryota (58)
	Riboviria (14)
	other sequences (8)

Experimental Method

	X-RAY DIFFRACTION (105)
	ELECTRON MICROSCOPY (11)

Polymer Entity Type

	Protein (116)
	DNA (12)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (24)
	2.0 - 2.5 (37)
	2.5 - 3.0 (24)
	3.0 - 3.5 (22)
	3.5 - 4.0 (4)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (6)
	2005 - 2009 (26)
	2010 - 2014 (37)
	2015 - 2019 (6)
	2020 - 2024 (33)
	2025 - 2029 (4)

Enzyme Classification Name

	Transferases (21)
	Hydrolases (19)
	Oxidoreductases (6)
	Lyases (6)
	Isomerases (2)

Membrane Protein Annotation

	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (64)
	Cyclic (57)
	Dihedral (4)
	Helical (2)

SCOP Classification

	Alpha and beta proteins (a/b) (21)
	Alpha and beta proteins (a+b) (20)
	All beta proteins (10)
	Artifacts (8)
	All alpha proteins (5)
	Small proteins (1)

AllSelected

1 to 25 of 116 Structures

Page 1 of 5

Sort by

Explore in 3D

1BIH \| pdb_00001bih	Download File View File

CRYSTAL STRUCTURE OF THE INSECT IMMUNE PROTEIN HEMOLIN: A NEW DOMAIN ARRANGEMENT WITH IMPLICATIONS FOR HOMOPHILIC ADHESION

Su, X.-D., Gastinel, L.N., Vaughn, D.E., Faye, I., Poon, P., Bjorkman, P.J.

(1998) Science 281: 991-995

Released	1998-10-14
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Hyalophora cecropia
Macromolecule	HEMOLIN (protein)
Unique Ligands	PO4

Explore in 3D

1JL3 \| pdb_00001jl3	Download File View File

Crystal Structure of B. subtilis ArsC

Su, X.-D., Bennett, M.S.

(2001) Proc Natl Acad Sci U S A 98: 13577-13582

Released	2001-10-24
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bacillus subtilis
Macromolecule	ARSENATE REDUCTASE (protein)
Unique Ligands	SO4

Explore in 3D

1KTV \| pdb_00001ktv	Download File View File

Crystal Structure of Elongation Factor G Dimer Without Nucleotide

Laurberg, M., Kristensen, O., Su, X.D., Liljas, A.

To be published

Released	2003-12-23
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Thermus thermophilus
Macromolecule	ELONGATION FACTOR G (protein)

Explore in 3D

1LVA \| pdb_00001lva	Download File View File

Crystal structure of a C-terminal fragment of Moorella thermoacetica elongation factor SelB

Selmer, M., Su, X.-D.

(2002) EMBO J 21: 4145-4153

Released	2002-08-21
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Moorella thermoacetica
Macromolecule	Selenocysteine-specific elongation factor (protein)
Unique Ligands	SO4, Y1

Explore in 3D

1PFR \| pdb_00001pfr	Download File View File

RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN

Logan, D.T., Su, X.D., Aberg, A., Regnstrom, K., Hajdu, J., Eklund, H., Nordlund, P.

(1996) Structure 4: 1053-1064

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE (protein)
Unique Ligands	FE, HG

Explore in 3D

1PHR \| pdb_00001phr	Download File View File

THE CRYSTAL STRUCTURE OF A LOW MOLECULAR PHOSPHOTYROSINE PROTEIN PHOSPHATASE

Su, X.-D., Taddei, N., Stefani, M., Ramponi, G., Nordlund, P.

(1994) Nature 370: 575-578

Released	1995-07-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus
Macromolecule	LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE (protein)
Unique Ligands	SO4

Explore in 3D

1R3U \| pdb_00001r3u	Download File View File

Crystal Structure of Hypoxanthine-Guanine Phosphoribosyltransferase from Thermoanaerobacter tengcongensis

Chen, Q., Liang, Y.H., Gu, X.C., Luo, M., Su, X.D.

To be published

Released	2004-10-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Caldanaerobacter subterraneus subsp. tengcongensis
Macromolecule	Hypoxanthine-guanine phosphoribosyltransferase (protein)
Unique Ligands	ACT, MG

Explore in 3D

1RKB \| pdb_00001rkb	Download File View File

The structure of adrenal gland protein AD-004

Ren, H., Liang, Y., Bennett, M., Su, X.D.

(2005) Proc Natl Acad Sci U S A 102: 303-308

Released	2005-01-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Protein AD-004 (protein)
Unique Ligands	LI, SO4

Explore in 3D

1RN7 \| pdb_00001rn7	Download File View File

Structure of human cystatin D

Alvarez-Fernandez, M., Liang, Y.H., Abrahamson, M., Su, X.D.

(2005) J Biological Chem 280: 18221-18228

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Cystatin D (protein)

Explore in 3D

1ROA \| pdb_00001roa	Download File View File

Structure of human cystatin D

Alvarez-Fernandez, M., Liang, Y.H., Abrahamson, M., Su, X.D.

(2005) J Biological Chem 280: 18221-18228

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Cystatin D (protein)

Explore in 3D

1XIK \| pdb_00001xik	Download File View File

RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN

Logan, D.T., Su, X.-D., Aberg, A., Regnstrom, K., Hajdu, J., Eklund, H., Nordlund, P.

(1996) Structure 4: 1053-1064

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE (protein)
Unique Ligands	FE2, HG

Explore in 3D

2AYD \| pdb_00002ayd	Download File View File

Crystal Structure of the C-terminal WRKY domainof AtWRKY1, an SA-induced and partially NPR1-dependent transcription factor

Duan, M.R., Nan, J., Li, Y., Su, X.D.

(2007) Nucleic Acids Res 35: 1145-1154

Released	2006-10-31
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Arabidopsis thaliana
Macromolecule	WRKY transcription factor 1 (protein)
Unique Ligands	SIN, ZN

Explore in 3D

2B78 \| pdb_00002b78	Download File View File

A putative sam-dependent methyltransferase from Streptococcus mutans

Nan, J., Wang, K.T., Su, X.D.

To be published

Released	2006-10-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus mutans
Macromolecule	hypothetical protein SMU.776 (protein)

Explore in 3D

2BB0 \| pdb_00002bb0	Download File View File

Structure of Imidazolonepropionase from Bacillus subtilis

Liang, Y.H., Yu, Y., Su, X.D.

(2006) J Biological Chem 281: 36929-36936

Released	2006-09-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	Imidazolonepropionase (protein)
Unique Ligands	ACT, ZN

Explore in 3D

2D4G \| pdb_00002d4g	Download File View File

Structure of YjcG protein, a putative 2'-5' RNA ligase from Bacillus subtilis

Li, D., Liang, Y.H., Su, X.D.

(2008) Proteins 72: 1071-1076

Released	2006-10-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	hypothetical protein BSU11850 (protein)

Explore in 3D

2G3F \| pdb_00002g3f	Download File View File

Crystal Structure of imidazolonepropionase complexed with imidazole-4-acetic acid sodium salt, a substrate homologue

Yu, Y., Liang, Y.H., Su, X.D.

(2006) J Biological Chem 281: 36929-36936

Released	2006-09-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	Imidazolonepropionase (protein)
Unique Ligands	IZC, ZN

Explore in 3D

2HCU \| pdb_00002hcu	Download File View File

Crystal Structure Of Smu.1381 (or LeuD) from Streptococcus Mutans

Gao, Z.Q., Hou, H.F., Li, L.F., Liang, Y.H., Su, X.D., Dong, Y.H.

To be published

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptococcus mutans
Macromolecule	3-isopropylmalate dehydratase small subunit (protein)
Unique Ligands	SO4

Explore in 3D

2HVV \| pdb_00002hvv	Download File View File

Crystal structure of dCMP deaminase from Streptococcus mutans

Hou, H.F., Gao, Z.Q., Li, L.F., Liang, Y.H., Su, X.D., Dong, Y.H.

(2008) J Mol Biology 377: 220-231

Released	2007-09-11
Method	X-RAY DIFFRACTION 3 Å
Organisms	Streptococcus mutans
Macromolecule	deoxycytidylate deaminase (protein)
Unique Ligands	SO4, ZN

Explore in 3D

2HVW \| pdb_00002hvw	Download File View File

Crystal structure of dCMP deaminase from Streptococcus mutans

Hou, H.F., Gao, Z.Q., Li, L.F., Liang, Y.H., Su, X.D., Dong, Y.H.

(2008) J Mol Biology 377: 220-231

Released	2007-09-11
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Streptococcus mutans
Macromolecule	deoxycytidylate deaminase (protein)
Unique Ligands	DCP, DDN, DIO, MG, ZN

Explore in 3D

2PER \| pdb_00002per	Download File View File

Crystal Structure of Human Chloride Intracellular Channel protein 2

Su, X.D., Liang, Y.H., Mi, W.

(2008) Proteins 71: 509-513

Released	2008-03-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Chloride intracellular channel protein 2 (protein)
Unique Ligands	MNB

Explore in 3D

2RI0 \| pdb_00002ri0	Download File View File

Crystal Structure of glucosamine 6-phosphate deaminase (NagB) from S. mutans

Li, D., Liu, C., Li, L.F., Su, X.D.

(2008) J Mol Biology 379: 73-81

Released	2008-03-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptococcus mutans
Macromolecule	Glucosamine-6-phosphate deaminase (protein)
Unique Ligands	BTB, NA

Explore in 3D

2RI1 \| pdb_00002ri1	Download File View File

Crystal Structure of glucosamine 6-phosphate deaminase (NagB) with GlcN6P from S. mutans

Liu, C., Li, D., Su, X.D.

(2008) J Mol Biology 379: 73-81

Released	2008-03-25
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Streptococcus mutans
Macromolecule	Glucosamine-6-phosphate deaminase (protein)
Unique Ligands	BTB, GLP

Explore in 3D

3BGK \| pdb_00003bgk	Download File View File

The crystal structure of hypothetic protein SMU.573 from Streptococcus mutans

Liang, Y.H., Zhou, Y.F., Yang, C., Su, X.D.

To be published

Released	2008-12-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Streptococcus mutans
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	K, PO4

Explore in 3D

3BR8 \| pdb_00003br8	Download File View File

Crystal structure of acylphosphatase from Bacillus subtilis

Li, D., Hu, J.C., Xia, B., Su, X.D.

To be published

Released	2008-06-24
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Bacillus subtilis
Macromolecule	Probable acylphosphatase (protein)
Unique Ligands	GOL, PO4

Explore in 3D

3CP7 \| pdb_00003cp7	Download File View File

Crystal structure of a thermostable serine protease AL20 from extremophilic microoganism

Yang, N., Nan, J., Su, X.-D.

(2008) Proteins 73: 1072-1075

Released	2009-02-10
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Nesterenkonia aethiopica
Macromolecule	alkaline serine protease AL20 (protein)
Unique Ligands	FMT

1 to 25 of 116 Structures

Page 1 of 5

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BIH | pdb_00001bih

1JL3 | pdb_00001jl3

1KTV | pdb_00001ktv

1LVA | pdb_00001lva

1PFR | pdb_00001pfr

1PHR | pdb_00001phr

1R3U | pdb_00001r3u

1RKB | pdb_00001rkb

1RN7 | pdb_00001rn7

1ROA | pdb_00001roa

1XIK | pdb_00001xik

2AYD | pdb_00002ayd

2B78 | pdb_00002b78

2BB0 | pdb_00002bb0

2D4G | pdb_00002d4g

2G3F | pdb_00002g3f

2HCU | pdb_00002hcu

2HVV | pdb_00002hvv

2HVW | pdb_00002hvw

2PER | pdb_00002per

2RI0 | pdb_00002ri0

2RI1 | pdb_00002ri1

3BGK | pdb_00003bgk

3BR8 | pdb_00003br8

3CP7 | pdb_00003cp7