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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Sugio, S."

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Search Summary

This query matches 49 Structures.

Refinements

Structure Determination Methodology

experimental (49)

Scientific Name of Source Organism

	Homo sapiens (10)
	Bacillus sp. YM-1 (6)
	Gallus gallus (6)
	Aloe arborescens (3)
	Porphyromonas gingivalis (3)
	Rheum palmatum (3)
	Bos taurus (2)
	Citrus x microcarpa (2)
	Huperzia serrata (2)
	Rattus norvegicus (2)

More...

Taxonomy

	Eukaryota (33)
	Bacteria (16)

Experimental Method

X-RAY DIFFRACTION (49)

Polymer Entity Type

Protein (49)

Refinement Resolution (Å)

	1.5 - 2.0 (26)
	2.0 - 2.5 (15)
	2.5 - 3.0 (8)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (16)
	2000 - 2004 (8)
	2005 - 2009 (12)
	2010 - 2014 (11)

Enzyme Classification Name

	Transferases (19)
	Hydrolases (10)
	Isomerases (7)
	Lyases (7)
	Oxidoreductases (4)
	Ligases (2)

Symmetry Type

	Cyclic (41)
	Asymmetric (9)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (20)
	Alpha and beta proteins (a+b) (10)
	All alpha proteins (6)
	Multi-domain proteins (alpha and beta) (8)
	Artifacts (7)
	All beta proteins (4)

AllSelected

1 to 25 of 49 Structures

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1A0G \| pdb_00001a0g	Download File View File

L201A MUTANT OF D-AMINO ACID AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAMINE-5'-PHOSPHATE

Sugio, S., Kashima, A., Kishimoto, K., Peisach, D., Petsko, G.A., Ringe, D., Yoshimura, T., Esaki, N.

(1998) Protein Eng 11: 613-619

Released	1998-06-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus sp. YM-1
Macromolecule	D-AMINO ACID AMINOTRANSFERASE (protein)
Unique Ligands	PMP

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1AB9 \| pdb_00001ab9	Download File View File

CRYSTAL STRUCTURE OF BOVINE GAMMA-CHYMOTRYPSIN

Sugio, S., Kashima, A., Inoue, Y., Maeda, I., Nose, T., Shimohigashi, Y.

(1998) Eur J Biochem 255: 12-23

Released	1997-08-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bos taurus
Macromolecule	GAMMA-CHYMOTRYPSIN (protein) PENTAPEPTIDE (TPGVY) (protein)
Unique Ligands	SO4

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1AFQ \| pdb_00001afq	Download File View File

CRYSTAL STRUCTURE OF BOVINE GAMMA-CHYMOTRYPSIN COMPLEXED WITH A SYNTHETIC INHIBITOR

Sugio, S., Kashima, A., Inoue, Y., Maeda, I., Nose, T., Shimohigashi, Y.

(1998) Eur J Biochem 255: 12-23

Released	1997-09-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	BOVINE GAMMA-CHYMOTRYPSIN (protein)
Unique Ligands	0FG, SO4

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1AO6 \| pdb_00001ao6	Download File View File

CRYSTAL STRUCTURE OF HUMAN SERUM ALBUMIN

Sugio, S., Mochizuki, S., Noda, M., Kashima, A.

(1999) Protein Eng 12: 439-446

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	SERUM ALBUMIN (protein)

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1BM0 \| pdb_00001bm0	Download File View File

CRYSTAL STRUCTURE OF HUMAN SERUM ALBUMIN

Sugio, S., Kashima, A., Mochizuki, S., Noda, M., Kobayashi, K.

(1999) Protein Eng 12: 439-446

Released	1999-07-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	SERUM ALBUMIN (protein)

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1DAA \| pdb_00001daa	Download File View File

CRYSTALLOGRAPHIC STRUCTURE OF D-AMINO ACID AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAL-5'-PHOSPHATE

Sugio, S., Peisach, D., Ringe, D.

(1995) Biochemistry 34: 9661-9669

Released	1995-09-15
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Bacillus sp. YM-1
Macromolecule	D-AMINO ACID AMINOTRANSFERASE (protein)
Unique Ligands	PLP

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1G2W \| pdb_00001g2w	Download File View File

E177S MUTANT OF THE PYRIDOXAL-5'-PHOSPHATE ENZYME D-AMINO ACID AMINOTRANSFERASE

Lepore, B.W., Ringe, D.

(2000) Biochemistry And Molecular Biology Of Vitamin B6 And Pqq-dependent Proteins, 10th Annual International Symposium On Vitamin B6 339-346

Released	2000-11-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	D-ALANINE AMINOTRANSFERASE (protein)
Unique Ligands	ACT, PLP

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1J1B \| pdb_00001j1b	Download File View File

Binary complex structure of human tau protein kinase I with AMPPNP

Aoki, M., Yokota, T., Sugiura, I., Sasaki, C., Hasegawa, T., Okumura, C., Kohno, T., Sugio, S., Matsuzaki, T.

(2004) Acta Crystallogr D Biol Crystallogr 60: 439-446

Released	2003-12-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Glycogen synthase kinase-3 beta (protein)
Unique Ligands	ANP

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1J1C \| pdb_00001j1c	Download File View File

Binary complex structure of human tau protein kinase I with ADP

Aoki, M., Yokota, T., Sugiura, I., Sasaki, C., Hasegawa, T., Okumura, C., Kohno, T., Sugio, S., Matsuzaki, T.

(2004) Acta Crystallogr D Biol Crystallogr 60: 439-446

Released	2003-12-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Glycogen synthase kinase-3 beta (protein)
Unique Ligands	ADP, MG

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1J1J \| pdb_00001j1j	Download File View File

Crystal Structure of human Translin

Sugiura, I., Sasaki, C., Hasegawa, T., Kohno, T., Sugio, S., Moriyama, H., Kasai, M., Matsuzaki, T.

(2004) Acta Crystallogr D Biol Crystallogr 60: 674-679

Released	2003-12-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Translin (protein)

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1QNN \| pdb_00001qnn	Download File View File

Cambialistic superoxide dismutase from Porphyromonas gingivalis

Sugio, S., Hiraoka, B.Y., Yamakura, F.

(2000) Eur J Biochem 267: 3487

Released	2000-06-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Porphyromonas gingivalis
Macromolecule	SUPEROXIDE DISMUTASE (protein)
Unique Ligands	FE

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1RLS \| pdb_00001rls	Download File View File

CRYSTAL STRUCTURE OF RNASE T1 COMPLEXED WITH THE PRODUCT NUCLEOTIDE 3'-GMP. STRUCTURAL EVIDENCE FOR DIRECT INTERACTION OF HISTIDINE 40 AND GLUTAMIC ACID 58 WITH THE 2'-HYDROXYL GROUP OF RIBOSE

Gohda, K., Oka, K.-I., Tomita, K.-I., Hakoshima, T.

(1994) J Biological Chem 269: 17531-17536

Released	1994-12-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aspergillus oryzae
Macromolecule	RIBONUCLEASE T1 (protein)
Unique Ligands	3GP, CA

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1TPB \| pdb_00001tpb	Download File View File

OFFSET OF A CATALYTIC LESION BY A BOUND WATER SOLUBLE

Zhang, Z., Sugio, S., Komives, E.A., Liu, K.D., Knowles, J.R., Petsko, G.A., Ringe, D.

(1995) Biochemistry 34: 13612-13621

Released	1995-02-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gallus gallus
Macromolecule	TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	PGH

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1TPC \| pdb_00001tpc	Download File View File

OFFSET OF A CATALYTIC LESION BY A BOUND WATER SOLUBLE

Zhang, Z., Sugio, S., Komives, E.A., Liu, K.D., Knowles, J.R., Petsko, G.A., Ringe, D.

(1995) Biochemistry 34: 13612-13621

Released	1995-02-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gallus gallus
Macromolecule	TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	PGH

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1TPH \| pdb_00001tph	Download File View File

1.8 ANGSTROMS CRYSTAL STRUCTURE OF WILD TYPE CHICKEN TRIOSEPHOSPHATE ISOMERASE-PHOSPHOGLYCOLOHYDROXAMATE COMPLEX

Zhang, Z., Sugio, S., Komives, E.A., Liu, K.D., Knowles, J.R., Petsko, G.A., Ringe, D.

(1994) Biochemistry 33: 2830-2837

Released	1994-04-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Gallus gallus
Macromolecule	TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	PGH

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1TPU \| pdb_00001tpu	Download File View File

S96P CHANGE IS A SECOND-SITE SUPPRESSOR FOR H95N SLUGGISH MUTANT TRIOSEPHOSPHATE ISOMERASE

Zhang, Z., Sugio, S., Komives, E.A., Liu, K.D., Stock, A.M., Narayana, N., Xuong, Ng.H., Knowles, J.R., Petsko, G.A., Ringe, D.

(1996) Biochemistry 35: 15474-15484

Released	1995-04-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gallus gallus
Macromolecule	TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	PGH

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1TPV \| pdb_00001tpv	Download File View File

S96P CHANGE IS A SECOND-SITE SUPPRESSOR FOR H95N SLUGGISH MUTANT TRIOSEPHOSPHATE ISOMERASE

Zhang, Z., Sugio, S., Komives, E.A., Liu, K.D., Stock, A.M., Narayana, N., Xuong, Ng.H., Knowles, J.R., Petsko, G.A., Ringe, D.

(1996) Biochemistry 35: 15474-15484

Released	1995-04-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gallus gallus
Macromolecule	TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	PGH

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1TPW \| pdb_00001tpw	Download File View File

TRIOSEPHOSPHATE ISOMERASE DRINKS WATER TO KEEP HEALTHY

Zhang, Z., Sugio, S., Komives, E.A., Liu, K.D., Stock, A.M., Narayana, N., Xuong, Ng.H., Knowles, J.R., Petsko, G.A., Ringe, D.

(1999) Biochemistry 38: 4389-4397

Released	1995-04-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gallus gallus
Macromolecule	TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	PGH

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1UER \| pdb_00001uer	Download File View File

Crystal structure of Porphyromonas gingivalis SOD

Yamakura, F., Sugio, S., Hiraoka, B.Y., Yokota, T., Ohmori, D.

(2003) Biochemistry 42: 10790-10799

Released	2004-05-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Porphyromonas gingivalis
Macromolecule	superoxide dismutase (protein)
Unique Ligands	FE

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1UES \| pdb_00001ues	Download File View File

Crystal structure of Porphyromonas gingivalis SOD

Yamakura, F., Sugio, S., Hiraoka, B.Y., Yokota, T., Ohmori, D.

(2003) Biochemistry 42: 10790-10799

Released	2004-05-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Porphyromonas gingivalis
Macromolecule	superoxide dismutase (protein)
Unique Ligands	MN

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1ULZ \| pdb_00001ulz	Download File View File

Crystal structure of the biotin carboxylase subunit of pyruvate carboxylase

Kondo, S., Nakajima, Y., Sugio, S., Yong-Biao, J., Sueda, S., Kondo, H.

(2004) Acta Crystallogr D Biol Crystallogr 60: 486-492

Released	2004-03-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	pyruvate carboxylase n-terminal domain (protein)

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1WRM \| pdb_00001wrm	Download File View File

Crystal structure of JSP-1

Yokota, T., Kashima, A., Kato, R., Sugio, S.

(2006) Proteins 66: 272-278

Released	2005-10-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	dual specificity phosphatase 22 (protein)
Unique Ligands	MES

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1WS6 \| pdb_00001ws6	Download File View File

The Structure of Thermus thermphillus HB8 hypothetical protein TTHA0928

Sasaki, C., Sugiura, I., Sugio, S., Tamura, T., Inagaki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-02-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermus thermophilus HB8
Macromolecule	methyltransferase (protein)

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1X3X \| pdb_00001x3x	Download File View File

Crystal Structure of Cytochrome b5 from Ascaris suum

Yokota, T., Nakajima, Y., Yamakura, F., Sugio, S., Hashimoto, M., Takamiya, S., Aoki, T.

(2006) Biochem J 394: 437-447

Released	2006-06-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Ascaris suum
Macromolecule	Cytochrome b5 (protein)
Unique Ligands	HEM, SO4

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2D39 \| pdb_00002d39	Download File View File

Trivalent Recognition Unit of Innate Immunity System; Crystal Structure of human M-ficolin Fibrinogen-like Domain

Tanio, M., Kondo, S., Sugio, S., Kohno, T.

(2007) J Biological Chem 282: 3889-3895

Released	2006-12-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Ficolin-1 (protein)
Unique Ligands	CA

1 to 25 of 49 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A0G | pdb_00001a0g

1AB9 | pdb_00001ab9

1AFQ | pdb_00001afq

1AO6 | pdb_00001ao6

1BM0 | pdb_00001bm0

1DAA | pdb_00001daa

1G2W | pdb_00001g2w

1J1B | pdb_00001j1b

1J1C | pdb_00001j1c

1J1J | pdb_00001j1j

1QNN | pdb_00001qnn

1RLS | pdb_00001rls

1TPB | pdb_00001tpb

1TPC | pdb_00001tpc

1TPH | pdb_00001tph

1TPU | pdb_00001tpu

1TPV | pdb_00001tpv

1TPW | pdb_00001tpw

1UER | pdb_00001uer

1UES | pdb_00001ues

1ULZ | pdb_00001ulz

1WRM | pdb_00001wrm

1WS6 | pdb_00001ws6

1X3X | pdb_00001x3x

2D39 | pdb_00002d39