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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Suzuki, K."

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Search Summary

This query matches 202 Structures.

Refinements

Structure Determination Methodology

experimental (202)

Scientific Name of Source Organism

	Homo sapiens (52)
	Severe acute respiratory syndrome coronavirus 2 (14)
	Pseudomonas aeruginosa PAO1 (11)
	Alcaligenes faecalis (9)
	Enterococcus hirae (9)
	Enterococcus hirae ATCC 9790 (9)
	Mus musculus (9)
	synthetic construct (9)
	Aspergillus aculeatus (7)
	Priestia megaterium (7)

More...

Taxonomy

	Eukaryota (95)
	Bacteria (89)
	Riboviria (16)
	other sequences (9)
	Archaea (5)
	Duplodnaviria (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (163)
	ELECTRON MICROSCOPY (26)
	SOLUTION NMR (13)

Polymer Entity Type

	Protein (199)
	DNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (21)
	1.5 - 2.0 (55)
	2.0 - 2.5 (49)
	2.5 - 3.0 (30)
	3.0 - 3.5 (20)
	3.5 - 4.0 (7)
	4.0 - 4.5 (7)

Release Date

	1985 - 1989 (2)
	1995 - 1999 (2)
	2000 - 2004 (11)
	2005 - 2009 (30)
	2010 - 2014 (42)
	2015 - 2019 (37)
	2020 - 2024 (78)

Enzyme Classification Name

	Hydrolases (55)
	Oxidoreductases (37)
	Translocases (17)
	Transferases (9)
	Ligases (3)
	Lyases (2)

Membrane Protein Annotation

	PDBTM (11)
	MemProtMD (5)
	OPM (4)
	mpstruc (3)

Symmetry Type

	Asymmetric (133)
	Cyclic (43)
	Dihedral (23)
	Tetrahedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (33)
	All beta proteins (31)
	Alpha and beta proteins (a+b) (19)
	All alpha proteins (22)
	Coiled coil proteins (5)
	Multi-domain proteins (alpha and beta) (2)
	Artifacts (3)
	Peptides (1)

AllSelected

1 to 25 of 202 Structures

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1DJ6 \| pdb_00001dj6	Download File View File

COMPLEX OF A Z-DNA HEXAMER, D(CG)3, WITH SYNTHETIC POLYAMINE AT ROOM TEMPERATURE

Ohishi, H., Tomita, K.-i., Nakanishi, I., Ohtsuchi, M., Hakoshima, T., Rich, A.

(2002) FEBS Lett 523: 29-34

Released	1999-12-18
Method	X-RAY DIFFRACTION 1 Å
Macromolecule	5'-D(CPGPCPGPCPG)-3' (nucleic acid)
Unique Ligands	104, MG

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1GD1 \| pdb_00001gd1	Download File View File

STRUCTURE OF HOLO-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILUS AT 1.8 ANGSTROMS RESOLUTION

Skarzynski, T., Moody, P.C.E., Wonacott, A.J.

(1987) J Mol Biology 193: 171-187

Released	1988-01-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	HOLO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	NAD, SO4

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1IT4 \| pdb_00001it4	Download File View File

Solution structure of the prokaryotic Phospholipase A2 from Streptomyces violaceoruber

Ohtani, K., Sugiyama, M., Izuhara, M., Koike, T.

(2002) J Biological Chem 277: 20051-20058

Released	2002-09-04
Method	SOLUTION NMR
Organisms	Streptomyces violaceoruber
Macromolecule	phospholipase A2 (protein)
Unique Ligands	CA

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1IT5 \| pdb_00001it5	Download File View File

Solution structure of apo-type PLA2 from Streptomyces violaceruber A-2688.

Sugiyama, M., Ohtani, K., Izuhara, M., Koike, T.

(2002) J Biological Chem 277: 20051-20058

Released	2002-09-04
Method	SOLUTION NMR
Organisms	Streptomyces violaceoruber
Macromolecule	Phospholipase A2 (protein)

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1ITX \| pdb_00001itx	Download File View File

Catalytic Domain of Chitinase A1 from Bacillus circulans WL-12

Iwahori, F., Matsumoto, T., Watanabe, T., Nonaka, T.

(1999) Proc Jpn Acad Ser B Phys Biol Sci 75: 269-274

Released	2002-03-13
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Niallia circulans
Macromolecule	Glycosyl Hydrolase (protein)
Unique Ligands	GOL

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1JEH \| pdb_00001jeh	Download File View File

CRYSTAL STRUCTURE OF YEAST E3, LIPOAMIDE DEHYDROGENASE

Toyoda, T., Suzuki, K., Sekigushi, T., Reed, J., Takenaka, A.

(1998) J Biochem 123: 668-674

Released	2001-07-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DIHYDROLIPOAMIDE DEHYDROGENASE (protein)
Unique Ligands	FAD

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1JVA \| pdb_00001jva	Download File View File

CRYSTAL STRUCTURE OF THE VMA1-DERIVED ENDONUCLEASE BEARING THE N AND C EXTEIN PROPEPTIDES

Mizutani, R., Satow, Y.

(2002) J Mol Biology 316: 919-929

Released	2002-08-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	VMA1-DERIVED HOMING ENDONUCLEASE X10SSS (protein)

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1KFU \| pdb_00001kfu	Download File View File

Crystal Structure of Human m-Calpain Form II

Strobl, S., Fernandez-Catalan, C., Braun, M., Huber, R., Masumoto, H., Nakagawa, K., Irie, A., Sorimachi, H., Bourenkow, G., Bartunik, H., Suzuki, K., Bode, W.

(2000) Proc Natl Acad Sci U S A 97: 588-592

Released	2001-12-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	M-CALPAIN LARGE SUBUNIT (protein) M-CALPAIN SMALL SUBUNIT (protein)

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1KFX \| pdb_00001kfx	Download File View File

Crystal Structure of Human m-Calpain Form I

Strobl, S., Fernandez-Catalan, C., Braun, M., Huber, R., Masumoto, H., Nakagawa, K., Irie, A., Sorimachi, H., Bourenkow, G., Bartunik, H., Suzuki, K., Bode, W.

(2000) Proc Natl Acad Sci U S A 97: 588-592

Released	2001-12-07
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens
Macromolecule	M-CALPAIN LARGE SUBUNIT (protein) M-CALPAIN SMALL SUBUNIT (protein)

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1KP4 \| pdb_00001kp4	Download File View File

CALCIUM-BOUND FORM OF PROKARYOTIC PHOSPHOLIPASE A2

Matoba, Y., Katsube, Y., Sugiyama, M.

(2002) J Biological Chem 277: 20059-20069

Released	2002-09-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptomyces violaceoruber
Macromolecule	phospholipase A2 (protein)
Unique Ligands	CA

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1LWB \| pdb_00001lwb	Download File View File

Crystal structure of prokaryotic phospholipase A2 at atomic resolution

Matoba, Y., Sugiyama, M.

(2003) Proteins 51: 453-469

Released	2003-06-10
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Streptomyces violaceoruber
Macromolecule	putative secreted protein (protein)

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1QTO \| pdb_00001qto	Download File View File

1.5 A CRYSTAL STRUCTURE OF A BLEOMYCIN RESISTANCE DETERMINANT FROM BLEOMYCIN-PRODUCING STREPTOMYCES VERTICILLUS

Kawano, Y., Kumagai, T., Muta, K., Matoba, Y., Davies, J., Sugiyama, M.

(2000) J Mol Biology 295: 915-925

Released	2000-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces verticillus
Macromolecule	BLEOMYCIN-BINDING PROTEIN (protein)

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1UEA \| pdb_00001uea	Download File View File

MMP-3/TIMP-1 COMPLEX

Bode, W., Maskos, K., Gomis-Rueth, F.-X., Nagase, H.

(1997) Nature 389: 77-81

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	MATRIX METALLOPROTEINASE-3 (protein) TISSUE INHIBITOR OF METALLOPROTEINASE-1 (protein)
Unique Ligands	CA, ZN

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1V28 \| pdb_00001v28	Download File View File

Solution structure of paralytic peptide of the wild Silkmoth, Antheraea yamamai

Kawaguchi, K., Ying, A., Suzuki, K., Kumaki, Y., Demura, M., Nitta, K.

To be published

Released	2004-10-26
Method	SOLUTION NMR
Organisms	Manduca sexta
Macromolecule	Paralytic Peptide (protein)

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1V53 \| pdb_00001v53	Download File View File

The crystal structure of 3-isopropylmalate dehydrogenase from Bacillus coagulans

Fujita, K., Minami, H., Suzuki, K., Tsunoda, M., Sekiguchi, T., Mizui, R., Tsuzaki, S., Nakamura, S., Takenaka, A.

To be published

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Heyndrickxia coagulans
Macromolecule	3-isopropylmalate dehydrogenase (protein)

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1V59 \| pdb_00001v59	Download File View File

Crystal structure of yeast lipoamide dehydrogenase complexed with NAD+

Adachi, W., Suzuki, K., Tsunoda, M., Sekiguchi, T., Reed, L.J., Takenaka, A.

To be published

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Dihydrolipoamide dehydrogenase (protein)
Unique Ligands	FAD, NAD, PO4

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1V5B \| pdb_00001v5b	Download File View File

The Structure Of The Mutant, S225A and E251L, Of 3-Isopropylmalate Dehydrogenase From Bacillus Coagulans

Fujita, K., Minami, H., Suzuki, K., Tsunoda, M., Sekiguchi, T., Mizui, R., Tsuzaki, S., Nakamura, S., Takenaka, A.

To be published

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Heyndrickxia coagulans
Macromolecule	3-isopropylmalate dehydrogenase (protein)
Unique Ligands	SO4

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1V5E \| pdb_00001v5e	Download File View File

Crystal Structure of Pyruvate oxidase containing FAD, from Aerococcus viridans

Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.

To be published

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Aerococcus viridans
Macromolecule	Pyruvate oxidase (protein)
Unique Ligands	FAD, SO4

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1V5F \| pdb_00001v5f	Download File View File

Crystal Structure of Pyruvate oxidase complexed with FAD and TPP, from Aerococcus viridans

Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 900-907

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aerococcus viridans
Macromolecule	Pyruvate oxidase (protein)
Unique Ligands	FAD, MG, SO4, TPP

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1V5G \| pdb_00001v5g	Download File View File

Crystal Structure of the Reaction Intermediate between Pyruvate oxidase containing FAD and TPP, and Substrate Pyruvate

Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 900-907

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Aerococcus viridans
Macromolecule	Pyruvate oxidase (protein)
Unique Ligands	FAD, HTL, MG

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1VAX \| pdb_00001vax	Download File View File

Crystal Structure of Uricase from Arthrobacter globiformis

Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.

To be published

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Arthrobacter globiformis
Macromolecule	Uric acid oxidase (protein)

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1VAY \| pdb_00001vay	Download File View File

Crystal Structure of Uricase from Arthrobacter globiformis with inhibitor 8-azaxanthine

Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.

To be published

Released	2005-06-28
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Arthrobacter globiformis
Macromolecule	Uric acid oxidase (protein)
Unique Ligands	AZA

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1WYD \| pdb_00001wyd	Download File View File

Crystal Structure of Aspartyl-tRNA synthetase from Sulfolobus tokodaii

Maeda, Y., Hossain, M.T., Ubukata, S., Suzuki, K., Sekiguchi, T., Takenaka, A.

(2007) Acta Crystallogr D Biol Crystallogr 63: 1042-1047

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	hypothetical aspartyl-tRNA synthetase (protein)
Unique Ligands	CL, EPE, SO4

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1WYE \| pdb_00001wye	Download File View File

Crystal structure of 2-keto-3-deoxygluconate kinase (form 1) from Sulfolobus Tokodaii

Toyoda, T., Suzuki, K., Hossain, M.T., Koike, I., Sekiguchi, T., Takenaka, A.

To be published

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	2-keto-3-deoxygluconate kinase (protein)

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2CUY \| pdb_00002cuy	Download File View File

Crystal structure of malonyl CoA-acyl carrier protein transacylase from Thermus thermophilus HB8

Misaki, S., Suzuki, K., Kunishima, N., Sugawara, M., Kuroishi, C., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-06-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Malonyl CoA-[acyl carrier protein] transacylase (protein)

1 to 25 of 202 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DJ6 | pdb_00001dj6

1GD1 | pdb_00001gd1

1IT4 | pdb_00001it4

1IT5 | pdb_00001it5

1ITX | pdb_00001itx

1JEH | pdb_00001jeh

1JVA | pdb_00001jva

1KFU | pdb_00001kfu

1KFX | pdb_00001kfx

1KP4 | pdb_00001kp4

1LWB | pdb_00001lwb

1QTO | pdb_00001qto

1UEA | pdb_00001uea

1V28 | pdb_00001v28

1V53 | pdb_00001v53

1V59 | pdb_00001v59

1V5B | pdb_00001v5b

1V5E | pdb_00001v5e

1V5F | pdb_00001v5f

1V5G | pdb_00001v5g

1VAX | pdb_00001vax

1VAY | pdb_00001vay

1WYD | pdb_00001wyd

1WYE | pdb_00001wye

2CUY | pdb_00002cuy