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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Takahashi, R."

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Search Summary

This query matches 158 Structures.

Refinements

Structure Determination Methodology

experimental (158)

Scientific Name of Source Organism

	Lysobacter enzymogenes (30)
	Streptomyces griseus (27)
	Meleagris gallopavo (21)
	Penicillium janthinellum (14)
	Cryphonectria parasitica (13)
	Homo sapiens (12)
	Hepacivirus hominis (7)
	Mycobacterium tuberculosis H37Rv (6)
	Escherichia coli (5)
	Mycobacterium tuberculosis (5)

More...

Taxonomy

	Bacteria (85)
	Eukaryota (77)
	Riboviria (19)
	Eukaryota (eukaryotes) (3)
	Archaea (2)

Experimental Method

	X-RAY DIFFRACTION (157)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (158)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (8)
	1.5 - 2.0 (67)
	2.0 - 2.5 (68)
	2.5 - 3.0 (11)
	3.0 - 3.5 (2)

Release Date

	1980 - 1984 (2)
	1985 - 1989 (10)
	1990 - 1994 (48)
	1995 - 1999 (30)
	2000 - 2004 (28)
	2005 - 2009 (35)
	2010 - 2014 (1)
	2015 - 2019 (4)

Enzyme Classification Name

	Hydrolases (121)
	Ligases (5)
	Transferases (9)
	Oxidoreductases (3)
	Isomerases (2)
	Lyases (2)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (133)
	Cyclic (30)
	Dihedral (10)

SCOP Classification

	All beta proteins (106)
	Alpha and beta proteins (a/b) (19)
	Alpha and beta proteins (a+b) (28)
	Small proteins (22)
	Multi-domain proteins (alpha and beta) (10)
	Artifacts (4)
	All alpha proteins (2)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 158 Structures

Page 1 of 7

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1APT \| pdb_00001apt	Download File View File

CRYSTALLOGRAPHIC ANALYSIS OF A PEPSTATIN ANALOGUE BINDING TO THE ASPARTYL PROTEINASE PENICILLOPEPSIN AT 1.8 ANGSTROMS RESOLUTION

Sielecki, A.R., James, M.N.G.

(1983) Peptides: Structure And Function, Proceedings Of The Of The Eighth American Peptide Symposium 1: 521

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Penicillium janthinellum
Macromolecule	INHIBITOR ISOVALERYL (IVA)-VAL-VAL-LYSTA-O-ET (LYSTA IS A LYSYL SIDE CHAIN ANALOGUE OF STATIN (protein) PENICILLOPEPSIN (protein)
Unique Ligands	MAN

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1APU \| pdb_00001apu	Download File View File

Crystallographic analysis of a pepstatin analogue binding to the aspartyl proteinase penicillopepsin at 1.8 angstroms resolution

Sielecki, A.R., James, M.N.G.

(1992) Biochemistry 31: 3872

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Penicillium janthinellum
Macromolecule	PEPSTATIN ANALOGUE ISOVALERYL-VAL-VAL-STA-O-ET (protein) PROTEIN (PENICILLOPEPSIN) (protein)
Unique Ligands	MAN

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1APV \| pdb_00001apv	Download File View File

CRYSTALLOGRAPHIC ANALYSIS OF TRANSITION STATE MIMICS BOUND TO PENICILLOPEPSIN: DIFLUOROSTATINE-AND DIFLUOROSTATONE-CONTAINING PEPTIDES

Sielecki, A.R., James, M.N.G.

(1992) Biochemistry 31: 3872-3886

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Penicillium janthinellum
Macromolecule	INHIBITOR ISOVALERYL (IVA)-VAL-VAL-HYDRATED DIFLUOROSTATONE-N-METHYLAMINE (protein) PENICILLOPEPSIN (protein)
Unique Ligands	DMF, MAN, SO4, XYS

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1APW \| pdb_00001apw	Download File View File

CRYSTALLOGRAPHIC ANALYSIS OF TRANSITION STATE MIMICS BOUND TO PENICILLOPEPSIN: DIFLUOROSTATINE-AND DIFLUOROSTATONE-CONTAINING PEPTIDES

Sielecki, A.R., James, M.N.G.

(1992) Biochemistry 31: 3872-3886

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Penicillium janthinellum
Macromolecule	INHIBITOR ISOVALERYL (IVA)-VAL-VAL-DIFLUOROSTATINE-N-METHYLAMINE (protein) PENICILLOPEPSIN (protein)
Unique Ligands	DMF, HSY, MAN, SO4

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1BXO \| pdb_00001bxo	Download File View File

ACID PROTEINASE (PENICILLOPEPSIN) (E.C.3.4.23.20) COMPLEX WITH PHOSPHONATE INHIBITOR: METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUT YL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL) PHENYLPROPANOATE

Khan, A.R., Parrish, J.C., Fraser, M.E., Smith, W.W., Bartlett, P.A., James, M.N.G.

(1998) Biochemistry 37: 16839-16845

Released	1998-10-14
Method	X-RAY DIFFRACTION 0.95 Å
Organisms	Penicillium janthinellum
Macromolecule	PROTEIN (PENICILLOPEPSIN) (protein)
Unique Ligands	GOL, MAN, PP7, SO4

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1BXQ \| pdb_00001bxq	Download File View File

ACID PROTEINASE (PENICILLOPEPSIN) COMPLEX WITH PHOSPHONATE INHIBITOR.

Parrish, J.C., Khan, A.R., Fraser, M.E., Smith, W.W., Bartlett, P.A., James, M.N.G.

(1998) Biochemistry 37: 16839-16845

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Penicillium janthinellum
Macromolecule	PROTEIN (PENICILLOPEPSIN) (protein)
Unique Ligands	ACT, GOL, MAN, PP8, SO4

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1COA \| pdb_00001coa	Download File View File

THE EFFECT OF CAVITY CREATING MUTATIONS IN THE HYDROPHOBIC CORE OF CHYMOTRYPSIN INHIBITOR 2

Jackson, S.E., Moracci, M., Elmasry, N., Johnson, C.M., Fersht, A.R.

(1993) Biochemistry 32: 11259-11269

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Hordeum vulgare
Macromolecule	CHYMOTRYPSIN INHIBITOR 2 (protein)

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1CQ4 \| pdb_00001cq4	Download File View File

CI2 MUTANT WITH TETRAGLUTAMINE (MGQQQQGM) REPLACING MET59

Chen, Y.W., Stott, K.R.

(1999) Proc Natl Acad Sci U S A 96: 1257-1261

Released	1998-11-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Hordeum vulgare
Macromolecule	PROTEIN (SERINE PROTEINASE INHIBITOR 2) (protein)
Unique Ligands	SO4

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1CQI \| pdb_00001cqi	Download File View File

Crystal Structure of the Complex of ADP and MG2+ with Dephosphorylated E. Coli Succinyl-CoA Synthetase

Joyce, M.A., Fraser, M.E., James, M.N.G., Bridger, W.A., Wolodko, W.T.

(2000) Biochemistry 39: 17-25

Released	2000-01-07
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (SUCCINYL-COA SYNTHETASE ALPHA CHAIN) (protein) PROTEIN (SUCCINYL-COA SYNTHETASE BETA CHAIN) (protein)
Unique Ligands	ADP, COA, MG, PO4

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1CQJ \| pdb_00001cqj	Download File View File

CRYSTAL STRUCTURE OF DEPHOSPHORYLATED E. COLI SUCCINYL-COA SYNTHETASE

Joyce, M.A., Fraser, M.E., James, M.N.G., Bridger, W.A., Wolodko, W.T.

(2000) Biochemistry 39: 17-25

Released	2000-01-10
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	SUCCINYL-COA SYNTHETASE ALPHA CHAIN (protein) SUCCINYL-COA SYNTHETASE BETA CHAIN (protein)
Unique Ligands	COA, PO4

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1CSE \| pdb_00001cse	Download File View File

THE HIGH-RESOLUTION X-RAY CRYSTAL STRUCTURE OF THE COMPLEX FORMED BETWEEN SUBTILISIN CARLSBERG AND EGLIN C, AN ELASTASE INHIBITOR FROM THE LEECH HIRUDO MEDICINALIS. STRUCTURAL ANALYSIS, SUBTILISIN STRUCTURE AND INTERFACE GEOMETRY

Bode, W.

(1987) Eur J Biochem 166: 673-692

Released	1988-07-16
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Bacillus subtilis Hirudo medicinalis
Macromolecule	EGLIN C (protein) SUBTILISIN CARLSBERG (protein)
Unique Ligands	CA

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1ER8 \| pdb_00001er8	Download File View File

THE ACTIVE SITE OF ASPARTIC PROTEINASES

Hemmings, A.M., Veerapandian, B., Szelke, M., Cooper, J.B., Blundell, T.L.

(1984) FEBS Lett 174: 96-101

Released	1991-10-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cryphonectria parasitica Equus caballus
Macromolecule	Endothiapepsin (protein) H-77 (protein)

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1ESB \| pdb_00001esb	Download File View File

DIRECT STRUCTURE OBSERVATION OF AN ACYL-ENZYME INTERMEDIATE IN THE HYDROLYSIS OF AN ESTER SUBSTRATE BY ELASTASE

Ding, X., Rasmussen, B., Petsko, G.A., Ringe, D.

(1994) Biochemistry 33: 9285-9293

Released	1994-04-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Sus scrofa
Macromolecule	PORCINE PANCREATIC ELASTASE (protein)
Unique Ligands	BBL, CA, SO4

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1GBA \| pdb_00001gba	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA AND GLY 216 REPLACED BY ALA

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein)
Unique Ligands	SO4

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1GBB \| pdb_00001gbb	Download File View File

Alpha-lytic protease with met 190 replaced by ALA AND GLY 216 replaced by ALA complex with METHOXYSUCCINYL-ALA-ALA-PRO-ALANINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-ALANINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1GBC \| pdb_00001gbc	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA AND GLY 216 REPLACED BY ALA COMPLEX WITH METHOXYSUCCINYL-ALA-ALA-PRO-LEUCINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-LEUCINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1GBD \| pdb_00001gbd	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA AND GLY 216 REPLACED BY ALA COMPLEX WITH METHOXYSUCCINYL-ALA-ALA-PRO-PHENYLALANINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-PHENYLALANINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1GBE \| pdb_00001gbe	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA AND GLY 216 REPLACED BY LEU

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein)
Unique Ligands	SO4

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1GBF \| pdb_00001gbf	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA AND GLY 216 REPLACED BY LEU COMPLEX WITH METHOXYSUCCINYL-ALA-ALA-PRO-ALANINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-ALANINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1GBH \| pdb_00001gbh	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA AND GLY 216 REPLACED BY LEU COMPLEX WITH METHOXYSUCCINYL-ALA-ALA-PRO-LEUCINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-LEUCINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1GBI \| pdb_00001gbi	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA AND GLY 216 REPLACED BY LEU COMPLEX WITH METHOXYSUCCINYL-ALA-ALA-PRO-PHENYLALANINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-PHENYLALANINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1GBJ \| pdb_00001gbj	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein)
Unique Ligands	SO4

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1GBK \| pdb_00001gbk	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA COMPLEX WITH METHOXYSUCCINYL-ALA-ALA-PRO-ALANINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-ALANINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1GBL \| pdb_00001gbl	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA COMPLEX WITH METHOXYSUCCINYL-ALA-ALA-PRO-LEUCINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-LEUCINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

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1GBM \| pdb_00001gbm	Download File View File

ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA COMPLEX WITH METHOXYSUCCINYL-ALA-ALA-PRO-PHENYLALANINE BORONIC ACID

Mace, J.E., Agard, D.A.

(1995) J Mol Biology 254: 720-736

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Lysobacter enzymogenes
Macromolecule	ALPHA-LYTIC PROTEASE (protein) METHOXYSUCCINYL-ALA-ALA-PRO-PHENYLALANINE BORONIC ACID INHIBITOR (protein)
Unique Ligands	SO4

1 to 25 of 158 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1APT | pdb_00001apt

1APU | pdb_00001apu

1APV | pdb_00001apv

1APW | pdb_00001apw

1BXO | pdb_00001bxo

1BXQ | pdb_00001bxq

1COA | pdb_00001coa

1CQ4 | pdb_00001cq4

1CQI | pdb_00001cqi

1CQJ | pdb_00001cqj

1CSE | pdb_00001cse

1ER8 | pdb_00001er8

1ESB | pdb_00001esb

1GBA | pdb_00001gba

1GBB | pdb_00001gbb

1GBC | pdb_00001gbc

1GBD | pdb_00001gbd

1GBE | pdb_00001gbe

1GBF | pdb_00001gbf

1GBH | pdb_00001gbh

1GBI | pdb_00001gbi

1GBJ | pdb_00001gbj

1GBK | pdb_00001gbk

1GBL | pdb_00001gbl

1GBM | pdb_00001gbm