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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Thymark, M."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Escherichia coli (3)
	Lederbergia lenta (3)
	Lactococcus lactis (2)
	Mycobacterium tuberculosis H37Rv (2)
	Thermotoga maritima (1)

Taxonomy

Bacteria (11)

Experimental Method

X-RAY DIFFRACTION (11)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (2)
	2.0 - 2.5 (5)
	2.5 - 3.0 (2)

Release Date

	2005 - 2009 (7)
	2010 - 2014 (4)

Enzyme Classification Name

	Hydrolases (8)
	Oxidoreductases (2)
	Lyases (1)

Symmetry Type

	Cyclic (7)
	Asymmetric (3)
	Dihedral (1)

SCOP Classification

	All beta proteins (5)
	Alpha and beta proteins (a/b) (5)

AllSelected

1 to 11 of 11 Structures

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2BSL \| pdb_00002bsl	Download File View File

Crystal structure of L. lactis dihydroorotate dehydrogense A in complex with 3,4-dihydroxybenzoate

Wolfe, A.E., Hansen, M., Gattis, S.G., Hu, Y.-C., Johansson, E., Arent, S., Larsen, S., Palfey, B.A.

(2007) Biochemistry 46: 5741

Released	2006-08-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Lactococcus lactis
Macromolecule	DIHYDROOROTATE DEHYDROGENASE A (protein)
Unique Ligands	ACT, DHB, FMN, GOL, MG

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2BX7 \| pdb_00002bx7	Download File View File

Crystal structure of L. lactis dihydroorotate dehydrogense A in complex with 3,5-dihydroxybenzoate

Wolfe, A.E., Hansen, M., Gattis, S.G., Hu, Y.-C., Johansson, E., Arent, S., Larsen, S., Palfey, B.A.

(2007) Biochemistry 46: 5741

Released	2006-08-29
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Lactococcus lactis
Macromolecule	DIHYDROOROTATE DEHYDROGENASE (protein)
Unique Ligands	34D, ACT, FMN, GOL, MG

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2J4H \| pdb_00002j4h	Download File View File

Crystal structure of a H121A Escherichia coli dCTP deaminase mutant enzyme

Johansson, E., Thymark, M., Bynck, J.H., Fanoe, M., Larsen, S., Willemoes, M.

(2007) FEBS J 274: 4188

Released	2007-08-07
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE (protein)
Unique Ligands	MG, YYY

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2J4Q \| pdb_00002j4q	Download File View File

Crystal structure of a E138A Escherichia coli dCTP deaminase mutant enzyme in complex with dTTP

Johansson, E., Thymark, M., Bynck, J.H., Fanoe, M., Larsen, S., Willemoes, M.

(2007) FEBS J 274: 4188

Released	2007-08-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE (protein)
Unique Ligands	MG, TTP, TYD

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2QLP \| pdb_00002qlp	Download File View File

Bifunctional dCTP deaminase:dUTPase from Mycobacterium tuberculosis, apo form

Christophersen, S., Harris, P., Willemoes, M.

(2007) J Mol Biology 376: 554-569

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Deoxycytidine triphosphate deaminase (protein)
Unique Ligands	1PE

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2QXX \| pdb_00002qxx	Download File View File

Bifunctional dCTP deaminase: dUTPase from Mycobacterium tuberculosis in complex with dTTP

Christophersen, S., Harris, P., Willemoes, M.

(2008) J Mol Biology 376: 554-569

Released	2008-02-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Deoxycytidine triphosphate deaminase (protein)
Unique Ligands	1PE, MG, TTP

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2V9X \| pdb_00002v9x	Download File View File

E138D variant of Escherichia coli dCTP deaminase in complex with dUTP

Thymark, M., Johansson, E., Larsen, S., Willemoes, M.

(2008) Arch Biochem Biophys 470: 20

Released	2007-11-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE (protein)
Unique Ligands	DUT, MG, SO4

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3ZSC \| pdb_00003zsc	Download File View File

Catalytic function and substrate recognition of the pectate lyase from Thermotoga maritima

McDonough, M.A., Thymark, M., Frisner, H., Hotchkiss, A., Sonksen, C., Bjornvad, M., Johansen, K.S., Larsen, S.

To be published

Released	2012-07-11
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Thermotoga maritima
Macromolecule	PECTATE TRISACCHARIDE-LYASE (protein)
Unique Ligands	GOL, PO4
Unique branched monosaccharides	ADA, AQA

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4CFY \| pdb_00004cfy	Download File View File

SAVINASE CRYSTAL STRUCTURES FOR COMBINED SINGLE CRYSTAL DIFFRACTION AND POWDER DIFFRACTION ANALYSIS

Frankaer, C.G., Moroz, O.V., Turkenburg, J.P., Aspmo, S.I., Thymark, M., Friis, E.P., Stahla, K., Nielsen, J.E., Wilson, K.S., Harris, P.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1115

Released	2014-04-09
Method	X-RAY DIFFRACTION 1.17 Å
Organisms	Lederbergia lenta
Macromolecule	SUBTILISIN SAVINASE (protein)
Unique Ligands	CA, NA

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4CFZ \| pdb_00004cfz	Download File View File

SAVINASE CRYSTAL STRUCTURES FOR COMBINED SINGLE CRYSTAL DIFFRACTION AND POWDER DIFFRACTION ANALYSIS

Frankaer, C.G., Moroz, O.V., Turkenburg, J.P., Aspmo, S.I., Thymark, M., Friis, E.P., Stahla, K., Nielsen, J.E., Wilson, K.S., Harris, P.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1115

Released	2014-04-09
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Lederbergia lenta
Macromolecule	SUBTILISIN SAVINASE (protein)
Unique Ligands	CA, NA, SO4

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4CG0 \| pdb_00004cg0	Download File View File

Savinase crystal structures for combined single crystal diffraction and powder diffraction analysis

Frankaer, C.G., Moroz, O.V., Turkenburg, J.P., Aspmo, S.I., Thymark, M., Friis, E.P., Stahla, K., Nielsen, J.E., Wilson, K.S., Harris, P.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1115

Released	2014-04-09
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Lederbergia lenta
Macromolecule	SUBTILISIN SAVINASE (protein)
Unique Ligands	CA, NA

1 to 11 of 11 Structures

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2BSL | pdb_00002bsl

Crystal structure of L. lactis dihydroorotate dehydrogense A in complex with 3,4-dihydroxybenzoate

2BX7 | pdb_00002bx7

Crystal structure of L. lactis dihydroorotate dehydrogense A in complex with 3,5-dihydroxybenzoate

2J4H | pdb_00002j4h

Crystal structure of a H121A Escherichia coli dCTP deaminase mutant enzyme

2J4Q | pdb_00002j4q

Crystal structure of a E138A Escherichia coli dCTP deaminase mutant enzyme in complex with dTTP

2QLP | pdb_00002qlp

Bifunctional dCTP deaminase:dUTPase from Mycobacterium tuberculosis, apo form

2QXX | pdb_00002qxx

Bifunctional dCTP deaminase: dUTPase from Mycobacterium tuberculosis in complex with dTTP

2V9X | pdb_00002v9x

E138D variant of Escherichia coli dCTP deaminase in complex with dUTP

3ZSC | pdb_00003zsc

Catalytic function and substrate recognition of the pectate lyase from Thermotoga maritima

4CFY | pdb_00004cfy

SAVINASE CRYSTAL STRUCTURES FOR COMBINED SINGLE CRYSTAL DIFFRACTION AND POWDER DIFFRACTION ANALYSIS

4CFZ | pdb_00004cfz

SAVINASE CRYSTAL STRUCTURES FOR COMBINED SINGLE CRYSTAL DIFFRACTION AND POWDER DIFFRACTION ANALYSIS

4CG0 | pdb_00004cg0

Savinase crystal structures for combined single crystal diffraction and powder diffraction analysis

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2BSL | pdb_00002bsl

2BX7 | pdb_00002bx7

2J4H | pdb_00002j4h

2J4Q | pdb_00002j4q

2QLP | pdb_00002qlp

2QXX | pdb_00002qxx

2V9X | pdb_00002v9x

3ZSC | pdb_00003zsc

4CFY | pdb_00004cfy

4CFZ | pdb_00004cfz

4CG0 | pdb_00004cg0