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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Unzai, S."

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Search Summary

This query matches 78 Structures.

Refinements

Structure Determination Methodology

experimental (78)

Scientific Name of Source Organism

	Escherichia coli (14)
	Homo sapiens (9)
	Thermus thermophilus (6)
	Haemophilus influenzae (5)
	Rattus norvegicus (4)
	Mammuthus primigenius (3)
	Mus musculus (3)
	Thunnus thynnus (3)
	Bacillus subtilis (2)
	Caenorhabditis elegans (2)

More...

Taxonomy

	Eukaryota (38)
	Bacteria (29)
	Riboviria (3)
	other sequences (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (67)
	SOLUTION NMR (11)

Polymer Entity Type

	Protein (78)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (10)
	1.5 - 2.0 (35)
	2.0 - 2.5 (11)
	2.5 - 3.0 (9)
	3.0 - 3.5 (2)

Release Date

	2000 - 2004 (13)
	2005 - 2009 (23)
	2010 - 2014 (25)
	2015 - 2019 (16)
	2020 - 2024 (1)

Enzyme Classification Name

	Hydrolases (16)
	Lyases (13)
	Transferases (3)
	Isomerases (2)

Symmetry Type

	Asymmetric (41)
	Cyclic (34)
	Dihedral (8)

SCOP Classification

	Alpha and beta proteins (a+b) (14)
	All beta proteins (9)
	All alpha proteins (10)
	Artifacts (10)
	Alpha and beta proteins (a/b) (8)
	Multi-domain proteins (alpha and beta) (11)
	Coiled coil proteins (2)

AllSelected

1 to 25 of 78 Structures

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1IV1 \| pdb_00001iv1	Download File View File

Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase

Kishida, H., Wada, T., Unzai, S., Kuzuyama, T., Terada, T., Sirouzu, M., Yokoyama, S., Tame, J.R.H., Park, S.-Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) Acta Crystallogr D Biol Crystallogr 59: 23-31

Released	2002-09-11
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Thermus thermophilus
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)

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1IV2 \| pdb_00001iv2	Download File View File

Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase (bound form CDP)

Kishida, H., Wada, T., Unzai, S., Kuzuyama, T., Terada, T., Sirouzu, M., Yokoyama, S., Tame, J.R.H., Park, S.-Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) Acta Crystallogr D Biol Crystallogr 59: 23-31

Released	2002-09-11
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Thermus thermophilus
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	CDP, MG

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1IV3 \| pdb_00001iv3	Download File View File

Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase (bound form MG atoms)

Kishida, H., Wada, T., Unzai, S., Kuzuyama, T., Terada, T., Sirouzu, M., Yokoyama, S., Tame, J.R.H., Park, S.-Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) Acta Crystallogr D Biol Crystallogr 59: 23-31

Released	2002-09-11
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Thermus thermophilus
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	MG

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1IV4 \| pdb_00001iv4	Download File View File

Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase (bound form Substrate)

Kishida, H., Wada, T., Unzai, S., Kuzuyama, T., Terada, T., Sirouzu, M., Yokoyama, S., Tame, J.R.H., Park, S.-Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) Acta Crystallogr D Biol Crystallogr 59: 23-31

Released	2002-09-11
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Thermus thermophilus
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	C5P, MG

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1UEB \| pdb_00001ueb	Download File View File

Crystal structure of translation elongation factor P from Thermus thermophilus HB8

Hanawa-Suetsugu, K., Sekine, S., Sakai, H., Hori-Takemoto, C., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Proc Natl Acad Sci U S A 101: 9595-9600

Released	2004-05-25
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Thermus thermophilus
Macromolecule	elongation factor P (protein)

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1UEK \| pdb_00001uek	Download File View File

Crystal structure of 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase

Wada, T., Kuramitsu, S., Yokoyama, S., Tame, J.R.H., Park, S.Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) J Biological Chem 278: 30022-30027

Released	2003-06-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermus thermophilus
Macromolecule	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase (protein)

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1UIU \| pdb_00001uiu	Download File View File

Crystal structures of the liganded and unliganded nickel binding protein NikA from Escherichia coli (Nickel unliganded form)

Heddle, J., Scott, D.J., Unzai, S., Park, S.-Y., Tame, J.R.H.

(2003) J Biological Chem 278: 50322-50329

Released	2004-02-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Escherichia coli
Macromolecule	Nickel-binding periplasmic protein (protein)

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1UIV \| pdb_00001uiv	Download File View File

Crystal structures of the liganded and unliganded nickel binding protein NikA from Escherichia coli (Nickel liganded form)

Heddle, J., Scott, D.J., Unzai, S., Park, S.-Y., Tame, J.R.H.

(2003) J Biological Chem 278: 50322-50329

Released	2004-02-03
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	Nickel-binding periplasmic protein (protein)
Unique Ligands	NI

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1V4U \| pdb_00001v4u	Download File View File

Crystal structure of bluefin tuna carbonmonoxy-hemoglobin

Yokoyama, T., Chong, K.T., Miyazaki, Y., Nakatsukasa, T., Unzai, S., Miyazaki, G., Morimoto, H., Jeremy, R.H.T., Park, S.Y.

(2004) J Biological Chem 279: 28632-28640

Released	2004-07-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thunnus thynnus
Macromolecule	hemoglobin alpha chain (protein) hemoglobin beta chain (protein)
Unique Ligands	CMO, HEM

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1V4W \| pdb_00001v4w	Download File View File

Crystal structure of bluefin tuna hemoglobin deoxy form at pH7.5

Yokoyama, T., Chong, K.T., Miyazaki, Y., Nakatsukasa, T., Unzai, S., Miyazaki, G., Morimoto, H., Jeremy, R.H.T., Park, S.Y.

(2004) J Biological Chem 279: 28632-28640

Released	2004-07-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thunnus thynnus
Macromolecule	hemoglobin alpha chain (protein) hemoglobin beta chain (protein)
Unique Ligands	HEM

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1V4X \| pdb_00001v4x	Download File View File

Crystal structure of bluefin tuna hemoglobin deoxy form at pH5.0

Yokoyama, T., Chong, K.T., Miyazaki, Y., Nakatsukasa, T., Unzai, S., Miyazaki, G., Morimoto, H., Jeremy, R.H.T., Park, S.Y.

(2004) J Biological Chem 279: 28632-28640

Released	2004-07-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Thunnus thynnus
Macromolecule	hemoglobin alpha chain (protein) hemoglobin beta chain (protein)
Unique Ligands	HEM

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1V9F \| pdb_00001v9f	Download File View File

Crystal structure of catalytic domain of pseudouridine synthase RluD from Escherichia coli

Mizutani, K., Machida, Y., Unzai, S., Park, S.-Y., Tame, J.R.H.

(2004) Biochemistry 43: 4454-4463

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	Ribosomal large subunit pseudouridine synthase D (protein)
Unique Ligands	PO4

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1V9K \| pdb_00001v9k	Download File View File

The crystal structure of the catalytic domain of pseudouridine synthase RluC from Escherichia coli

Machida, Y., Mizutani, K., Unzai, S., Park, S.-Y., Tame, J.R.H.

(2004) Biochemistry 43: 4454-4463

Released	2004-05-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Ribosomal large subunit pseudouridine synthase C (protein)
Unique Ligands	SO4

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2DGE \| pdb_00002dge	Download File View File

Crystal structure of oxidized cytochrome C6A from Arabidopsis thaliana

Chida, H., Yokoyama, T., Kawai, F., Nakazawa, A., Akazaki, H., Takayama, Y., Hirano, T., Suruga, K., Satoh, T., Yamada, S., Kawachi, R., Unzai, S., Nishio, T., Park, S.-Y., Oku, T.

(2006) FEBS Lett 580: 3763-3768

Released	2006-07-04
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Arabidopsis thaliana
Macromolecule	Cytochrome c6 (protein)
Unique Ligands	HEM, ZN

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2E63 \| pdb_00002e63	Download File View File

Solution structure of the NEUZ domain in KIAA1787 protein

He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2009) J Mol Biology 393: 478-495

Released	2007-06-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	KIAA1787 protein (protein)

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2EB4 \| pdb_00002eb4	Download File View File

Crystal structure of apo-HpcG

Izumi, A., Rea, D., Adachi, T., Unzai, S., Park, S.Y., Roper, D.I., Tame, J.R.H.

(2007) J Mol Biology 370: 899-911

Released	2007-07-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	2-oxo-hept-3-ene-1,7-dioate hydratase (protein)
Unique Ligands	NA, SCN

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2EB5 \| pdb_00002eb5	Download File View File

Crystal structure of HpcG complexed with oxalate

Izumi, A., Rea, D., Adachi, T., Unzai, S., Park, S.Y., Roper, D.I., Tame, J.R.H.

(2007) J Mol Biology 370: 899-911

Released	2007-07-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	2-oxo-hept-3-ene-1,7-dioate hydratase (protein)
Unique Ligands	MG, OXL, SCN

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2EB6 \| pdb_00002eb6	Download File View File

Crystal structure of HpcG complexed with Mg ion

Izumi, A., Rea, D., Adachi, T., Unzai, S., Park, S.Y., Roper, D.I., Tame, J.R.H.

(2007) J Mol Biology 370: 899-911

Released	2007-07-17
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Escherichia coli
Macromolecule	2-oxo-hept-3-ene-1,7-dioate hydratase (protein)
Unique Ligands	MG

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2EX2 \| pdb_00002ex2	Download File View File

Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli

Kishida, H., Unzai, S., Roper, D.I., Lloyd, A., Park, S.-Y., Tame, J.R.H.

(2006) Biochemistry 45: 783-792

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Escherichia coli
Macromolecule	Penicillin-binding protein 4 (protein)
Unique Ligands	GOL

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2EX6 \| pdb_00002ex6	Download File View File

Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with ampicillin

Kishida, H., Unzai, S., Roper, D.I., Lloyd, A., Park, S.-Y., Tame, J.R.H.

(2006) Biochemistry 45: 783-792

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	Penicillin-binding protein 4 (protein)
Unique Ligands	AIX, GOL

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2EX8 \| pdb_00002ex8	Download File View File

Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with penicillin-G

Kishida, H., Unzai, S., Roper, D.I., Lloyd, A., Park, S.-Y., Tame, J.R.H.

(2006) Biochemistry 45: 783-792

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	Penicillin-binding protein 4 (protein)
Unique Ligands	PNM

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2EX9 \| pdb_00002ex9	Download File View File

Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with penicillin-V

Kishida, H., Unzai, S., Roper, D.I., Lloyd, A., Park, S.-Y., Tame, J.R.H.

(2006) Biochemistry 45: 783-792

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	Penicillin-binding protein 4 (protein)
Unique Ligands	35P, GOL

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2EXA \| pdb_00002exa	Download File View File

Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with FAROM

Kishida, H., Unzai, S., Roper, D.I., Lloyd, A., Park, S.-Y., Tame, J.R.H.

(2006) Biochemistry 45: 783-792

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	Penicillin-binding protein 4 (protein)
Unique Ligands	DGF, GOL

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2EXB \| pdb_00002exb	Download File View File

Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with FLOMOX

Kishida, H., Unzai, S., Roper, D.I., Lloyd, A., Park, S.-Y., Tame, J.R.H.

(2006) Biochemistry 45: 783-792

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli
Macromolecule	Penicillin-binding protein 4 (protein)
Unique Ligands	FXM, GOL

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2MGZ \| pdb_00002mgz	Download File View File

Solution structure of RBFOX family ASD-1 RRM and SUP-12 RRM in ternary complex with RNA

Takahashi, M., Kuwasako, K., Unzai, S., Tsuda, K., Yoshikawa, S., He, F., Kobayashi, N., Guntert, P., Shirouzu, M., Ito, T., Tanaka, A., Yokoyama, S., Hagiwara, M., Kuroyanagi, H., Muto, Y.

(2014) Nat Struct Mol Biol 21: 778-786

Released	2014-08-13
Method	SOLUTION NMR
Organisms	Caenorhabditis elegans
Macromolecule	Protein ASD-1, isoform a (protein) Protein SUP-12, isoform a (protein) RNA (5'-R(UPGPCPAPUPGPGPUPGPUPGPC)-3') (nucleic acid)

1 to 25 of 78 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1IV1 | pdb_00001iv1

1IV2 | pdb_00001iv2

1IV3 | pdb_00001iv3

1IV4 | pdb_00001iv4

1UEB | pdb_00001ueb

1UEK | pdb_00001uek

1UIU | pdb_00001uiu

1UIV | pdb_00001uiv

1V4U | pdb_00001v4u

1V4W | pdb_00001v4w

1V4X | pdb_00001v4x

1V9F | pdb_00001v9f

1V9K | pdb_00001v9k

2DGE | pdb_00002dge

2E63 | pdb_00002e63

2EB4 | pdb_00002eb4

2EB5 | pdb_00002eb5

2EB6 | pdb_00002eb6

2EX2 | pdb_00002ex2

2EX6 | pdb_00002ex6

2EX8 | pdb_00002ex8

2EX9 | pdb_00002ex9

2EXA | pdb_00002exa

2EXB | pdb_00002exb

2MGZ | pdb_00002mgz