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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Xiang, Y."

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Search Summary

This query matches 247 Structures.

Refinements

Structure Determination Methodology

experimental (247)

Scientific Name of Source Organism

	Homo sapiens (64)
	Severe acute respiratory syndrome coronavirus 2 (39)
	Salasvirus phi29 (21)
	Lama glama (20)
	Mus musculus (18)
	Cyclocybe aegerita (11)
	Vaccinia virus (9)
	Bacteroides thetaiotaomicron VPI-5482 (8)
	African swine fever virus (7)
	Severe acute respiratory syndrome-related coronavirus (7)

More...

Taxonomy

	Eukaryota (132)
	Riboviria (76)
	Duplodnaviria (38)
	Varidnaviria (36)
	Bacteria (26)
	Monodnaviria (7)
	other sequences (7)

Experimental Method

	X-RAY DIFFRACTION (149)
	ELECTRON MICROSCOPY (96)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (246)
	DNA (4)
	RNA (2)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (6)
	1.5 - 2.0 (51)
	2.0 - 2.5 (56)
	2.5 - 3.0 (38)
	3.0 - 3.5 (39)
	3.5 - 4.0 (29)
	4.0 - 4.5 (8)
	> 4.5 (17)

Release Date

	2000 - 2004 (7)
	2005 - 2009 (39)
	2010 - 2014 (50)
	2015 - 2019 (51)
	2020 - 2024 (95)
	2025 - 2029 (5)

Enzyme Classification Name

	Hydrolases (54)
	Transferases (22)
	Oxidoreductases (6)
	Lyases (2)
	Translocases (2)
	Isomerases (1)

Membrane Protein Annotation

	OPM (11)
	PDBTM (3)
	MemProtMD (2)

Symmetry Type

	Asymmetric (141)
	Cyclic (100)
	Icosahedral (10)
	Dihedral (6)
	Helical (2)

SCOP Classification

	All beta proteins (43)
	Artifacts (22)
	Alpha and beta proteins (a+b) (15)
	All alpha proteins (8)
	Small proteins (7)
	Alpha and beta proteins (a/b) (5)
	Coiled coil proteins (2)
	Membrane and cell surface proteins and peptides (5)

AllSelected

1 to 25 of 247 Structures

Page 1 of 10

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1KV0 \| pdb_00001kv0	Download File View File

Cis/trans Isomerization of Non-prolyl Peptide Bond Observed in Crystal Structure of an Scorpion Toxin

Guan, R.J., He, X.L., Wang, M., Xiang, Y., Wang, D.C.

(2004) J Mol Biology 341: 1189-1204

Released	2003-09-16
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Olivierus martensii
Macromolecule	Alpha-like toxin BmK-M7 (protein)

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1P9G \| pdb_00001p9g	Download File View File

Crystal structure of a novel antifungal protein distinct with five disulfide bridges from Ecommia ulmoides Oliver at atomic resolution

Xiang, Y., Huang, R.H., Liu, X.Z., Wang, D.C.

(2004) J Struct Biol 148: 86-97

Released	2004-06-01
Method	X-RAY DIFFRACTION 0.84 Å
Organisms	Eucommia ulmoides
Macromolecule	EAFP 2 (protein)
Unique Ligands	ACT

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1P9Z \| pdb_00001p9z	Download File View File

The Solution Structure of Antifungal Peptide Distinct With a Five-disulfide Motif from Eucommia ulmoides Oliver

Huang, R.H., Xiang, Y., Tu, G.Z., Zhang, Y., Wang, D.C.

(2004) Biochemistry 43: 6005-6012

Released	2004-05-25
Method	SOLUTION NMR
Organisms	Eucommia ulmoides
Macromolecule	Eucommia Antifungal peptide 2 (protein)

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1T0Z \| pdb_00001t0z	Download File View File

Structure of an Excitatory Insect-specific Toxin with an Analgesic Effect on Mammalian from Scorpion Buthus martensii Karsch

Li, C., Guan, R.-J., Xiang, Y., Zhang, Y., Wang, D.-C.

(2005) Acta Crystallogr D Biol Crystallogr 61: 14-21

Released	2004-12-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Olivierus martensii
Macromolecule	insect neurotoxin (protein)
Unique Ligands	SO4

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1T7A \| pdb_00001t7a	Download File View File

Crystal structure of mutant Lys8Asp of scorpion alpha-like neurotoxin BmK M1 from Buthus martensii Karsch

Xiang, Y., Guan, R.J., He, X.L., Wang, C.G., Wang, M., Zhang, Y., Sundberg, E.J., Wang, D.C.

(2004) J Mol Biology 341: 1189-1204

Released	2004-09-07
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Olivierus martensii
Macromolecule	Alpha-like neurotoxin BmK-I (protein)

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1T7B \| pdb_00001t7b	Download File View File

Crystal structure of mutant Lys8Gln of scorpion alpha-like neurotoxin BmK M1 from Buthus martensii Karsch

Xiang, Y., Guan, R.J., He, X.L., Wang, C.G., Wang, M., Zhang, Y., Sundberg, E.J., Wang, D.C.

(2004) J Mol Biology 341: 1189-1204

Released	2004-09-07
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Olivierus martensii
Macromolecule	Alpha-like neurotoxin BmK-I (protein)

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1T7E \| pdb_00001t7e	Download File View File

Crystal structure of mutant Pro9Ser of scorpion alpha-like neurotoxin BmK M1 from Buthus martensii Karsch

Xiang, Y., Guan, R.J., He, X.L., Wang, C.G., Wang, M., Zhang, Y., Sundberg, E.J., Wang, D.C.

(2004) J Mol Biology 341: 1189-1204

Released	2004-09-07
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Olivierus martensii
Macromolecule	Alpha-like neurotoxin BmK-I (protein)
Unique Ligands	PO4

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1U6T \| pdb_00001u6t	Download File View File

Crystal structure of the human SH3 binding glutamic-rich protein like

Yin, L., Xiang, Y., Yang, N., Zhu, D.-Y., Huang, R.-H., Wang, D.-C.

(2005) Proteins 61: 213-216

Released	2005-08-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	SH3 domain-binding glutamic acid-rich-like protein (protein)
Unique Ligands	CIT

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1X7I \| pdb_00001x7i	Download File View File

Crystal structure of the native copper homeostasis protein (cutCm) with calcium binding from Shigella flexneri 2a str. 301

Zhu, D.Y., Zhu, Y.Q., Huang, R.H., Xiang, Y., Wang, D.C.

(2004) Proteins 58: 764-768

Released	2005-03-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Shigella flexneri 2a str. 301
Macromolecule	Copper homeostasis protein cutC (protein)
Unique Ligands	CA

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1X8C \| pdb_00001x8c	Download File View File

Crystal structure of the SeMet-derivative copper homeostasis protein (cutCm) with calcium binding from Shigella flexneri 2a str. 301

Wang, D.C., Zhu, D.Y.

(2005) Proteins 58: 764-768

Released	2005-08-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Shigella flexneri 2a str. 301
Macromolecule	Copper homeostasis protein cutC (protein)
Unique Ligands	CA

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2ISO \| pdb_00002iso	Download File View File

Ternary complex of DNA Polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-difluoromethylene triphosphate

Sucato, C.A., Upton, T.G., Kashemirov, B.A., Martinek, V., Xiang, Y., Beard, W.A.

(2007) Biochemistry 46: 461-471

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Polymerase (DNA directed), beta (protein) 5'-D(CPCPGPAPCPCPGPCPGPCPAPTPCPAPGPC)-3' (nucleic acid) 5'-D(GPCPTPGPAPTPGPCPGP(DOC))-3' (nucleic acid) 5'-D(PGPTPCPGP*G)-3' (nucleic acid)
Unique Ligands	CL, GFF, MG, NA

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2ISP \| pdb_00002isp	Download File View File

Ternary complex of DNA Polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-methylene triphosphate

Sucato, C.A., Upton, T.G., Kashemirov, B.A., Martinek, V., Xiang, Y., Beard, W.A.

(2007) Biochemistry 46: 461-471

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Polymerase (DNA directed), beta (protein) 5'-D(CPCPGPAPCPCPGPCPGPCPAPTPCPAPGPC)-3' (nucleic acid) 5'-D(GPCPTPGPAPTPGPCPGP(DOC))-3' (nucleic acid) 5'-D(PGPTPCPGP*G)-3' (nucleic acid)
Unique Ligands	CL, GGH, MG, NA

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2P6W \| pdb_00002p6w	Download File View File

Crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1

Zhang, Y., Ye, X., Van Etten, J.L., Rossmann, M.G.

(2007) Structure 15: 1031-1039

Released	2007-08-21
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Paramecium bursaria Chlorella virus 1
Macromolecule	Putative glycosyltransferase (Mannosyltransferase) involved in glycosylating the PBCV-1 major capsid protein (protein)
Unique Ligands	FLC, MN

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2P72 \| pdb_00002p72	Download File View File

crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1

Zhang, Y., Xiang, Y., Van Etten, J.L., Rossmann, M.G.

(2007) Structure 15: 1031-1039

Released	2007-08-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Paramecium bursaria Chlorella virus 1
Macromolecule	Putative glycosyltransferase (Mannosyltransferase) involved in glycosylating the PBCV-1 major capsid protein (protein)
Unique Ligands	MN, UPG

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2P73 \| pdb_00002p73	Download File View File

crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1

Zhang, Y., Xiang, Y., Van Etten, J.L., Rossmann, M.G.

(2007) Structure 15: 1031-1039

Released	2007-08-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Paramecium bursaria Chlorella virus 1
Macromolecule	Putative glycosyltransferase (Mannosyltransferase) involved in glycosylating the PBCV-1 major capsid protein (protein)
Unique Ligands	MN, UDP

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2WVX \| pdb_00002wvx	Download File View File

Structure of the Family GH92 Inverting Mannosidase BT3990 from Bacteroides thetaiotaomicron VPI-5482

Suits, M.D.L., Zhu, Y., Thompson, A., Gilbert, H.J., Davies, G.J.

(2010) Nat Chem Biol 6: 125

Released	2009-11-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	PUTATIVE ALPHA-1,2-MANNOSIDASE (protein)
Unique Ligands	CA, GOL

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2WVY \| pdb_00002wvy	Download File View File

STRUCTURE OF THE FAMILY GH92 INVERTING MANNOSIDASE BT2199 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482

Suits, M.D.L., Zhu, Y., Thompson, A., Gilbert, H.J., Davies, G.J.

(2010) Nat Chem Biol 6: 125

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	ALPHA-1,2-MANNOSIDASE (protein)

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2WVZ \| pdb_00002wvz	Download File View File

Structure of the Family GH92 Inverting Mannosidase BT3990 from Bacteroides thetaiotaomicron VPI-5482

Suits, M.D.L., Zhu, Y., Thompson, A., Gilbert, H.J., Davies, G.J.

(2010) Nat Chem Biol 6: 125

Released	2009-12-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	PUTATIVE ALPHA-1,2-MANNOSIDASE (protein)
Unique Ligands	CA, GOL, KIF

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2WW0 \| pdb_00002ww0	Download File View File

Structure of the Family GH92 Inverting Mannosidase BT3990 from Bacteroides thetaiotaomicron VPI-5482

Suits, M.D.L., Thompson, A., Zhu, Y., Gilbert, H.J., Davies, G.J.

(2010) Nat Chem Biol 6: 125

Released	2009-12-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	PUTATIVE ALPHA-1,2-MANNOSIDASE (protein)
Unique Ligands	CA, GOL, SWA

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2WW1 \| pdb_00002ww1	Download File View File

Structure of the Family GH92 Inverting Mannosidase BT3990 from Bacteroides thetaiotaomicron VPI-5482 in complex with Thiomannobioside

Suits, M.D.L., Zhu, Y., Thompson, A., Gilbert, H.J., Davies, G.J.

(2010) Nat Chem Biol 6: 125

Released	2009-12-29
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	PUTATIVE ALPHA-1,2-MANNOSIDASE (protein)
Unique branched monosaccharides	MAN, Z5L

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2WW2 \| pdb_00002ww2	Download File View File

Structure of the Family GH92 Inverting Mannosidase BT2199 from Bacteroides thetaiotaomicron VPI-5482

Suits, M.D.L., Zhu, Y., Thompson, A., Gilbert, H.J., Davies, G.J.

(2010) Nat Chem Biol 6: 125

Released	2009-12-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	ALPHA-1,2-MANNOSIDASE (protein)
Unique Ligands	GOL, MPD, NA, SWA

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2WW3 \| pdb_00002ww3	Download File View File

Structure of the Family GH92 Inverting Mannosidase BT3990 from Bacteroides thetaiotaomicron VPI-5482 in complex with thiomannobioside

Suits, M.D.L., Zhu, Y., Thompson, A.J., Gilbert, H.J., Davies, G.J.

(2010) Nat Chem Biol 6: 125

Released	2010-01-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	PUTATIVE ALPHA-1,2-MANNOSIDASE (protein)
Unique Ligands	CA, GOL
Unique branched monosaccharides	MAN, Z5L

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2WZS \| pdb_00002wzs	Download File View File

Structure of the Family GH92 Inverting Mannosidase BT3990 from Bacteroides thetaiotaomicron VPI-5482 in complex with Mannoimidazole

Zhu, Y., Suits, M.D.L., Thompson, A., Chavan, S., Dinev, Z., Dumon, C., Smith, N., Moremen, K.W., Xiang, Y., Siriwardena, A., Williams, S.J., Gilbert, H.J., Davies, G.J.

(2010) Nat Chem Biol 6: 125

Released	2009-12-29
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	PUTATIVE ALPHA-1,2-MANNOSIDASE (protein)
Unique Ligands	CA, GOL, MVL