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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Yang, K."

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Search Summary

This query matches 144 Structures.

Refinements

Structure Determination Methodology

experimental (144)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (42)
	Homo sapiens (32)
	synthetic construct (15)
	Mus musculus (10)
	Nostoc punctiforme PCC 73102 (10)
	Geobacillus stearothermophilus (7)
	Severe acute respiratory syndrome-related coronavirus (6)
	Zika virus (6)
	Escherichia coli K-12 (5)
	Thermotoga maritima (4)

More...

Taxonomy

	Riboviria (62)
	Eukaryota (49)
	Bacteria (45)
	other sequences (15)
	Viruses incertae sedis (3)
	Archaea (2)

Experimental Method

	X-RAY DIFFRACTION (113)
	ELECTRON MICROSCOPY (31)

Polymer Entity Type

	Protein (144)
	DNA (8)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (36)
	2.0 - 2.5 (47)
	2.5 - 3.0 (27)
	3.0 - 3.5 (7)
	3.5 - 4.0 (3)
	4.0 - 4.5 (8)
	> 4.5 (3)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (17)
	2010 - 2014 (16)
	2015 - 2019 (31)
	2020 - 2024 (73)
	2025 - 2029 (4)

Enzyme Classification Name

	Hydrolases (57)
	Transferases (23)
	Oxidoreductases (5)
	Translocases (6)
	Lyases (2)

Membrane Protein Annotation

	mpstruc (8)
	MemProtMD (3)
	PDBTM (3)
	OPM (1)

Symmetry Type

	Cyclic (74)
	Asymmetric (67)
	Dihedral (5)

SCOP Classification

	Alpha and beta proteins (a/b) (24)
	Alpha and beta proteins (a+b) (15)
	Artifacts (11)
	All beta proteins (14)
	All alpha proteins (11)

AllSelected

1 to 25 of 144 Structures

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1RKU \| pdb_00001rku	Download File View File

Crystal Structure of ThrH gene product of Pseudomonas Aeruginosa

Singh, S.K., Yang, K., Subramanian, K., Karthikeyan, S., Huynh, T., Zhang, X., Phillips, M.A., Zhang, H.

(2004) J Biological Chem 279: 13166-13173

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	homoserine kinase (protein)
Unique Ligands	EDO, MG

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1RKV \| pdb_00001rkv	Download File View File

Structure of Phosphate complex of ThrH from Pseudomonas aeruginosa

Singh, S.K., Yang, K., Subramanian, K., Karthikeyan, S., Huynh, T., Zhang, X., Phillips, M.A., Zhang, H.

(2004) J Biological Chem 279: 13166-13173

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	homoserine kinase (protein)
Unique Ligands	EDO, MG, PO4

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1S17 \| pdb_00001s17	Download File View File

Identification of Novel Potent Bicyclic Peptide Deformylase Inhibitors

Molteni, V., He, X., Nabakka, J., Yang, K., Kreusch, A., Gordon, P., Bursulaya, B., Ryder, N.S., Goldberg, R., He, Y.

(2004) Bioorg Med Chem Lett 14: 1477-1481

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Peptide deformylase (protein)
Unique Ligands	GNR, GOL, NI

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1WNO \| pdb_00001wno	Download File View File

Crystal structure of a native chitinase from Aspergillus fumigatus YJ-407

Hu, H., Wang, G., Yang, H., Zhou, J., Mo, L., Yang, K., Jin, C., Jin, C., Rao, Z.

To be published

Released	2005-03-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Aspergillus fumigatus
Macromolecule	Chitinase (protein)
Unique Ligands	MG, NAG, NDG, SO4

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1WOF \| pdb_00001wof	Download File View File

Crystal Structure Of SARS-CoV Mpro in Complex with an Inhibitor N1

Yang, H., Bartlam, M., Xue, X., Yang, K., Liang, W., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-08-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	I12

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2AMD \| pdb_00002amd	Download File View File

Crystal Structure Of SARS_CoV Mpro in Complex with an Inhibitor N9

Yang, H., Xue, X., Yang, K., Zhao, Q., Bartlam, M., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-09-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	9IN

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2AMP \| pdb_00002amp	Download File View File

Crystal Structure Of Porcine Transmissible Gastroenteritis Virus Mpro in Complex with an Inhibitor N1

Yang, H., Xue, X., Yang, K., Zhao, Q., Bartlam, M., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-09-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Transmissible gastroenteritis virus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	I12

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2AMQ \| pdb_00002amq	Download File View File

Crystal Structure Of SARS_CoV Mpro in Complex with an Inhibitor N3

Yang, H., Xue, X., Yang, K., Zhao, Q., Bartlam, M., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-09-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Severe acute respiratory syndrome-related coronavirus synthetic construct
Macromolecule	3C-like proteinase (protein) N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE (protein)

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2D2D \| pdb_00002d2d	Download File View File

Crystal Structure Of SARS-CoV Mpro in Complex with an Inhibitor I2

Yang, H., Bartlam, M., Xue, X., Yang, K., Liang, W., Ding, Y., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ENB

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2GTD \| pdb_00002gtd	Download File View File

Crystal Structure of a Type III Pantothenate Kinase: Insight into the Catalysis of an Essential Coenzyme A Biosynthetic Enzyme Universally Distributed in Bacteria

Yang, K., Eyobo, Y., Brand, A.L., Martynowski, D., Tomchick, D.

(2006) J Bacteriol 188: 5532-5540

Released	2006-08-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermotoga maritima
Macromolecule	Type III Pantothenate Kinase (protein)

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2H2Z \| pdb_00002h2z	Download File View File

Crystal structure of SARS-CoV main protease with authentic N and C-termini

Yang, H., Xue, X., Shen, W., Zhao, Q., Rao, Z.

(2007) J Mol Biology 366: 965-975

Released	2007-04-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	Replicase polyprotein 1ab (protein)

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2HBV \| pdb_00002hbv	Download File View File

Crystal Structure of alpha-Amino-beta-Carboxymuconate-epsilon-Semialdehyde-Decarboxylase (ACMSD)

Martynowski, D., Eyobo, Y., Li, T., Yang, K., Liu, A., Zhang, H.

(2006) Biochemistry 45: 10412-10421

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-amino-3-carboxymuconate 6-semialdehyde decarboxylase (protein)
Unique Ligands	MG, ZN

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2HBX \| pdb_00002hbx	Download File View File

Crystal Structure of alpha-Amino-beta-Carboxymuconate-epsilon-Semialdehyde-Decarboxylase (ACMSD)

Martynowski, D., Eyobo, Y., Li, T., Yang, K., Liu, A., Zhang, H.

(2006) Biochemistry 45: 10412-10421

Released	2006-09-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-amino-3-carboxymuconate 6-semialdehyde decarboxylase (protein)
Unique Ligands	CO

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2HOB \| pdb_00002hob	Download File View File

Crystal structure of SARS-CoV main protease with authentic N and C-termini in complex with a Michael acceptor N3

Xue, X., Yang, H., Shen, W., Zhao, Q., Li, J., Rao, Z.

(2007) J Mol Biology 366: 965-975

Released	2007-04-03
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Severe acute respiratory syndrome-related coronavirus synthetic construct
Macromolecule	N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE (protein) Replicase polyprotein 1ab (protein)

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2P87 \| pdb_00002p87	Download File View File

Crystal structure of the C-terminal domain of C. elegans pre-mRNA splicing factor Prp8

Zhang, L., Shen, J., Guarnieri, M.T., Heroux, A., Yang, K., Zhao, R.

(2007) Protein Sci 16: 1024-1031

Released	2007-05-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Caenorhabditis elegans
Macromolecule	Pre-mRNA-splicing factor Prp8 (protein)

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2P8R \| pdb_00002p8r	Download File View File

Crystal structure of the C-terminal domain of C. elegans pre-mRNA splicing factor Prp8 carrying R2303K mutant

Zhang, L., Shen, J., Guarnieri, M.T., Heroux, A., Yang, K., Zhao, R.

(2007) Protein Sci 16: 1024-1031

Released	2007-05-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Caenorhabditis elegans
Macromolecule	Pre-mRNA-splicing factor Prp8 (protein)

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3AKA \| pdb_00003aka	Download File View File

Structural basis for prokaryotic calcium-mediated regulation by a Streptomyces coelicolor calcium-binding protein

Zhao, X., Pang, H., Wang, S., Zhou, W., Yang, K., Bartlam, M.

(2010) Protein Cell 1: 771-779

Released	2011-01-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	Putative calcium binding protein (protein)
Unique Ligands	CA

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3AKB \| pdb_00003akb	Download File View File

Structural basis for prokaryotic calcium-mediated regulation by a Streptomyces coelicolor calcium-binding protein

Zhao, X., Pang, H., Wang, S., Zhou, W., Yang, K., Bartlam, M.

(2010) Protein Cell 1: 771-779

Released	2011-01-26
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	Putative calcium binding protein (protein)
Unique Ligands	CA

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3BEX \| pdb_00003bex	Download File View File

Type III pantothenate kinase from Thermotoga maritima complexed with pantothenate

Yang, K., Huerta, C., Strauss, E., Zhang, H.

(2008) Biochemistry 47: 1369-1380

Released	2008-06-24
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Thermotoga maritima
Macromolecule	Type III pantothenate kinase (protein)
Unique Ligands	PAU, PO4

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3BF1 \| pdb_00003bf1	Download File View File

Type III pantothenate kinase from Thermotoga maritima complexed with pantothenate and ADP

Yang, K., Huerta, C., Strauss, E., Zhang, H.

(2008) Biochemistry 47: 1369-1380

Released	2008-06-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermotoga maritima
Macromolecule	Type III pantothenate kinase (protein)
Unique Ligands	ADP, PAU

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3BF3 \| pdb_00003bf3	Download File View File

Type III pantothenate kinase from Thermotoga maritima complexed with product phosphopantothenate

Yang, K., Huerta, C., Strauss, E., Zhang, H.

(2008) Biochemistry 47: 1369-1380

Released	2008-06-24
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Thermotoga maritima
Macromolecule	Type III pantothenate kinase (protein)
Unique Ligands	MG, PAZ

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3E66 \| pdb_00003e66	Download File View File

Crystal structure of the beta-finger domain of yeast Prp8

Yang, K., Zhang, L., Xu, T., Heroux, A., Zhao, R.

(2008) Proc Natl Acad Sci U S A 105: 13817-13822

Released	2008-10-14
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PRP8 (protein)

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3QJZ \| pdb_00003qjz	Download File View File

Crystal structure of PI3K-gamma in complex with benzothiazole 1

Whittington, D.A., Tang, J., Yakowec, P.

(2011) J Med Chem 54: 1789-1811

Released	2011-03-30
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma isoform (protein)
Unique Ligands	QJZ, SO4

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3QK0 \| pdb_00003qk0	Download File View File

Crystal structure of PI3K-gamma in complex with benzothiazole 82

Whittington, D.A., Tang, J., Yakowec, P.

(2011) J Med Chem 54: 1789-1811

Released	2011-03-30
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma isoform (protein)
Unique Ligands	QK0, SO4

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3S2A \| pdb_00003s2a	Download File View File

Crystal structure of PI3K-gamma in complex with a quinoline inhibitor

Whittington, D.A., Tang, J., Yakowec, P.

(2011) J Med Chem 54: 4735-4751

Released	2011-06-08
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma isoform (protein)
Unique Ligands	2NQ, SO4

1 to 25 of 144 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1RKU | pdb_00001rku

1RKV | pdb_00001rkv

1S17 | pdb_00001s17

1WNO | pdb_00001wno

1WOF | pdb_00001wof

2AMD | pdb_00002amd

2AMP | pdb_00002amp

2AMQ | pdb_00002amq

2D2D | pdb_00002d2d

2GTD | pdb_00002gtd

2H2Z | pdb_00002h2z

2HBV | pdb_00002hbv

2HBX | pdb_00002hbx

2HOB | pdb_00002hob

2P87 | pdb_00002p87

2P8R | pdb_00002p8r

3AKA | pdb_00003aka

3AKB | pdb_00003akb

3BEX | pdb_00003bex

3BF1 | pdb_00003bf1

3BF3 | pdb_00003bf3

3E66 | pdb_00003e66

3QJZ | pdb_00003qjz

3QK0 | pdb_00003qk0

3S2A | pdb_00003s2a