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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Yapici, I."

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Search Summary

This query matches 29 Structures.

Refinements

Structure Determination Methodology

experimental (29)

Scientific Name of Source Organism

	Homo sapiens (27)
	Gallus gallus (2)

Taxonomy

Eukaryota (29)

Experimental Method

X-RAY DIFFRACTION (29)

Polymer Entity Type

Protein (29)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (14)
	2.0 - 2.5 (3)
	2.5 - 3.0 (6)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (14)
	2015 - 2019 (11)
	2020 - 2024 (3)

Enzyme Classification Name

	Hydrolases (2)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (23)
	Cyclic (6)

SCOP Classification

All beta proteins (26)

AllSelected

1 to 25 of 29 Structures

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Explore in 3D

3FEP \| pdb_00003fep	Download File View File

Crystal structure of the R132K:R111L:L121E:R59W-CRABPII mutant complexed with a synthetic ligand (merocyanin) at 2.60 angstrom resolution.

Jia, X., Geiger, J.H.

(2015) J Am Chem Soc 137: 1073-1080

Released	2009-11-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Cellular retinoic acid-binding protein 2 (protein)
Unique Ligands	LMC, MES

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4EDE \| pdb_00004ede	Download File View File

Crystal Structure of the Q108K:K40L:T51V:T53C:Y19W:R58W:T29L:A33W Mutant of Cellular Retinol Binding Protein Type II in Complex with All-trans-Retinal at 1.4 Angstrom Resolution

Nossoni, Z., Geiger, J.H.

(2012) Science 338: 1340-1343

Released	2012-12-26
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 2 (protein)
Unique Ligands	ACT, RET

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4EEJ \| pdb_00004eej	Download File View File

Crystal Structure of the Q108K:K40L:T51V:T53C:Y19W:R58W:T29L:Q4R Mutant of Cellular Retinol Binding Protein Type II in Complex with All-trans-Retinal at 1.5 Angstrom Resolution

Nossoni, Z., Geiger, J.H.

(2012) Science 338: 1340-1343

Released	2012-12-26
Method	X-RAY DIFFRACTION 1.501 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 2 (protein)
Unique Ligands	ACT, RET

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4EFG \| pdb_00004efg	Download File View File

Crystal Structure of the Q108K:K40L:T51V:T53C:Y19W:R58W:T29L Mutant of Cellular Retinol Binding Protein Type II in Complex with All-trans-Retinal at 1.58 Angstrom Resolution

Nossoni, Z., Geiger, J.H.

(2012) Science 338: 1340-1343

Released	2012-12-26
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 2 (protein)
Unique Ligands	ACT, RET

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4EXZ \| pdb_00004exz	Download File View File

Crystal Structure of the Q108K:K40L Mutant of Cellular Retinol Binding Protein Type II in Complex with All-trans-Retinal at 1.7 Angstrom Resolution

Nossoni, Z., Geiger, J.H.

(2012) Science 338: 1340-1343

Released	2012-12-26
Method	X-RAY DIFFRACTION 1.608 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 2 (protein)
Unique Ligands	ACT, RET

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4GKC \| pdb_00004gkc	Download File View File

Crystal structure of Q108K:K40L:T51V:T53C:R58W:T29L:Y19W:Q4A mutant of cellular retinol binding protein II complex with all-trans-retinal at 1.33

Nossoni, Z., Geiger, J.H.

(2012) Science 338: 1340-1343

Released	2012-12-26
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 2 (protein)
Unique Ligands	RET

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4I9R \| pdb_00004i9r	Download File View File

Crystal Structure of the R111K:R132L:Y134F:T54V:R59W:A32W Mutant of the Cellular Retinoic Acid Binding Protein Type II in Complex with All-Trans Retinal at 2.6 Angstrom Resolution

Nosrati, M., Geiger, J.H.

(2013) J Am Chem Soc 135: 16111-16119

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Cellular retinoic acid-binding protein 2 (protein)
Unique Ligands	RET

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4I9S \| pdb_00004i9s	Download File View File

Crystal Structure of the R111K:R132L:Y134F:T54V:R59W Mutant of the Cellular Retinoic Acid Binding Protein Type II in Complex with All-Trans Retinal at 2.58 Angstrom Resolution

Nosrati, M., Geiger, J.H.

(2013) J Am Chem Soc 135: 16111-16119

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Homo sapiens
Macromolecule	Cellular retinoic acid-binding protein 2 (protein)
Unique Ligands	RET

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4M6S \| pdb_00004m6s	Download File View File

Crystal structure of the R111K:R132Y:Y134F:T54V:R59W:A32W mutant of the Cellular Retinoic Acid Binding Protein Type II in complex with All-Trans Retinal at 2.38 Angstrom Resolution

Nosrati, M., Geiger, J.H.

(2013) J Am Chem Soc 135: 16111-16119

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Homo sapiens
Macromolecule	Cellular retinoic acid-binding protein 2 (protein)
Unique Ligands	RET

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4M7M \| pdb_00004m7m	Download File View File

Crystal structure of the R111K:R132Q:Y134F:T54V:R59W:A32W mutant of the Cellular Retinoic Acid Binding Protein Type II in complex with All-Trans Retinal at 2.57 Angstrom Resolution

Nosrati, M., Geiger, J.H.

(2013) J Am Chem Soc 135: 16111-16119

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.571 Å
Organisms	Homo sapiens
Macromolecule	Cellular retinoic acid-binding protein 2 (protein)
Unique Ligands	RET

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4QGV \| pdb_00004qgv	Download File View File

Crystal structure of the R132K:R111L mutant of Cellular Retinoic Acid Binding ProteinII complexed with a synthetic ligand (Merocyanine) at 1.73 angstrom resolution.

Nosrati, M., Yapici, I., Geiger, J.H.

(2015) J Am Chem Soc 137: 1073-1080

Released	2015-01-28
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Homo sapiens
Macromolecule	Cellular retinoic acid-binding protein 2 (protein)
Unique Ligands	LMC

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4QGW \| pdb_00004qgw	Download File View File

Crystal structure of the R132K:R111L:L121D mutant of Cellular Retinoic Acid Binding ProteinII complexed with a synthetic ligand (Merocyanine) at 1.77 angstrom resolution

Nosrati, M., Yapici, I., Geiger, J.H.

(2015) J Am Chem Soc 137: 1073-1080

Released	2015-01-28
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens
Macromolecule	Cellular retinoic acid-binding protein 2 (protein)
Unique Ligands	B3P, LMC

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4QGX \| pdb_00004qgx	Download File View File

Crystal structure of the R132K:R111L:L121E mutant of Cellular Retinoic Acid Binding ProteinII complexed with a synthetic ligand (Merocyanine) at 1.47 angstrom resolution

Nosrati, M., Yapici, I., Geiger, J.H.

(2015) J Am Chem Soc 137: 1073-1080

Released	2015-01-28
Method	X-RAY DIFFRACTION 1.471 Å
Organisms	Homo sapiens
Macromolecule	Cellular retinoic acid-binding protein 2 (protein)
Unique Ligands	LMC

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4QYN \| pdb_00004qyn	Download File View File

The Crystal Structures of holo-wt human Cellular Retinol Binding protein II (hCRBPII) bound to Retinol

Nossoni, Z., Assar, Z., Yapici, I., Nosrati, M., Wang, W., Berbasova, T., Vasileiou, C., Borhan, B., Geiger, H.

(2014) Acta Crystallogr D Biol Crystallogr 70: 3226-3232

Released	2014-12-31
Method	X-RAY DIFFRACTION 1.19 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 2 (protein)
Unique Ligands	ACT, RTL

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4QYP \| pdb_00004qyp	Download File View File

The Crystal Structures of holo-wt human Cellular Retinol Binding protein II (hCRBPII) bound to Retinal

Nossoni, Z., Assar, Z., Yapici, I., Nosrati, M., Wang, W., Berbasova, T., Vasileiou, C., Borhan, B., Geiger, H.

(2014) Acta Crystallogr D Biol Crystallogr 70: 3226-3232

Released	2014-12-10
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 2 (protein)
Unique Ligands	ACT, RET

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4QZT \| pdb_00004qzt	Download File View File

Crystal Structure of wild type Human Cellular Retinol Binding Protein II (hCRBPII) bound to retinol at 7 KeV beam energy

Assar, Z., Geiger, J.H.

(2014) Acta Crystallogr D Biol Crystallogr 70: 3226-3232

Released	2014-12-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 2 (protein)
Unique Ligands	ACT, RTL

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4QZU \| pdb_00004qzu	Download File View File

Crystal Structure of wild type Human Cellular Retinol Binding Protein II (hCRBPII) bound to retinol at 11 KeV beam energy

Assar, Z., Geiger, J.H.

(2014) Acta Crystallogr D Biol Crystallogr 70: 3226-3232

Released	2014-12-10
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 2 (protein)
Unique Ligands	ACT, GOL, RTL

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4RUU \| pdb_00004ruu	Download File View File

Crystal structure of the Q108K:K40L mutant of human Cellular Retinol Binding ProteinII in complex with All-trans-Retinal after 24 hour incubation at 1.4 Angstrom Resolution

Nosrati, M., Geiger, J.H.

(2012) Science 338: 1340-1343

Released	2014-12-10
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 2 (protein)
Unique Ligands	ACT, RET

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4ZCB \| pdb_00004zcb	Download File View File

Human CRBPII mutant - Y60W dimer

Nossoni, Z., Assar, Z., Wang, W., Geiger, J., Borhan, B.

(2016) Structure 24: 1590-1598

Released	2016-04-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 2 (protein)

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4ZGU \| pdb_00004zgu	Download File View File

Crystal structure of monomer Y60W hCRBPII

Nossoni, Z., Geiger, J.

(2016) Structure 24: 1590-1598

Released	2016-06-08
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 2 (protein)
Unique Ligands	ACT

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4ZH6 \| pdb_00004zh6	Download File View File

Crystal Structure of the Domain-Swapped Dimer Y60L mutant of Human Cellular Retinol Binding Protein II

Assar, Z., Nossoni, Z., Geiger, J.H.

(2016) Structure 24: 1590-1598

Released	2016-06-08
Method	X-RAY DIFFRACTION 1.5497 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 2 (protein)
Unique Ligands	ACT

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4ZH9 \| pdb_00004zh9	Download File View File

Crystal Structure of the Domain-Swapped Dimer Wild-Type of Human Cellular Retinol Binding Protein II

Assar, Z., Nossoni, Z., Geiger, J.H.

(2016) Structure 24: 1590-1598

Released	2016-06-08
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 2 (protein)

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4ZJ0 \| pdb_00004zj0	Download File View File

The crystal structure of monomer Q108K:K40L:Y60W CRBPII bound to all-trans-retinal

Nossoni, Z., Assar, Z., Wang, W., Vasileiou, C., Borhan, B., Geiger, J.H.

(2016) Structure 24: 1590-1598

Released	2016-05-11
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 2 (protein)
Unique Ligands	ACT, RET

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4ZR2 \| pdb_00004zr2	Download File View File

Crystal Structure of the Domain-Swapped Dimer K40L:Q108K:Y60W mutant of Human Cellular Retinol Binding Protein II

Assar, Z., Nossoni, Z., Geiger, J.H.

(2016) Structure 24: 1590-1598

Released	2016-06-08
Method	X-RAY DIFFRACTION 1.8024 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 2 (protein)
Unique Ligands	ACT, RET

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5DG4 \| pdb_00005dg4	Download File View File

Crystal structure of monomer human cellular retinol binding protein II-Y60L

Assar, Z., Nossoni, Z., Wang, W., Gieger, J.H., Borhan, B.

(2016) Structure 24: 1590-1598

Released	2016-09-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 2 (protein)
Unique Ligands	ACT

1 to 25 of 29 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3FEP | pdb_00003fep

4EDE | pdb_00004ede

4EEJ | pdb_00004eej

4EFG | pdb_00004efg

4EXZ | pdb_00004exz

4GKC | pdb_00004gkc

4I9R | pdb_00004i9r

4I9S | pdb_00004i9s

4M6S | pdb_00004m6s

4M7M | pdb_00004m7m

4QGV | pdb_00004qgv

4QGW | pdb_00004qgw

4QGX | pdb_00004qgx

4QYN | pdb_00004qyn

4QYP | pdb_00004qyp

4QZT | pdb_00004qzt

4QZU | pdb_00004qzu

4RUU | pdb_00004ruu

4ZCB | pdb_00004zcb

4ZGU | pdb_00004zgu

4ZH6 | pdb_00004zh6

4ZH9 | pdb_00004zh9

4ZJ0 | pdb_00004zj0

4ZR2 | pdb_00004zr2

5DG4 | pdb_00005dg4