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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Yuan, Q."

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Search Summary

This query matches 175 Structures.

Refinements

Structure Determination Methodology

experimental (175)

Scientific Name of Source Organism

	Homo sapiens (135)
	Mus musculus (36)
	Severe acute respiratory syndrome coronavirus 2 (35)
	Oryctolagus cuniculus (26)
	Bos taurus (16)
	Rattus norvegicus (14)
	synthetic construct (12)
	Lama glama (9)
	Sulfolobus acidocaldarius (3)
	Escherichia coli (2)

More...

Taxonomy

	Eukaryota (162)
	Riboviria (36)
	other sequences (12)
	Bacteria (7)
	Archaea (3)

Experimental Method

	ELECTRON MICROSCOPY (154)
	X-RAY DIFFRACTION (21)

Polymer Entity Type

Protein (175)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (9)
	2.0 - 2.5 (11)
	2.5 - 3.0 (50)
	3.0 - 3.5 (56)
	3.5 - 4.0 (24)
	4.0 - 4.5 (12)
	> 4.5 (12)

Release Date

	2000 - 2004 (1)
	2015 - 2019 (37)
	2020 - 2024 (137)

Enzyme Classification Name

	Hydrolases (55)
	Isomerases (51)
	Oxidoreductases (7)
	Transferases (5)

Membrane Protein Annotation

	PDBTM (51)
	mpstruc (52)
	OPM (22)
	MemProtMD (18)

Symmetry Type

	Asymmetric (100)
	Cyclic (73)
	Dihedral (2)

SCOP Classification

	All beta proteins (4)
	Alpha and beta proteins (a+b) (6)
	All alpha proteins (1)

AllSelected

1 to 25 of 175 Structures

Page 1 of 7

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1R8I \| pdb_00001r8i	Download File View File

Crystal structure of TraC

Yeo, H.-J., Yuan, Q., Beck, M.R., Baron, C., Waksman, G.

(2003) Proc Natl Acad Sci U S A 100: 15947-15952

Released	2004-01-06
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	TraC (protein)

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4TZ7 \| pdb_00004tz7	Download File View File

Crystal structure of type I phosphatidylinositol 4-phosphate 5-kinase alpha from Zebrafish

Hu, J., Qin, Y., Wang, J., Li, L., Wu, D., Ha, Y.

(2015) Nat Commun 6: 8205-8205

Released	2015-09-02
Method	X-RAY DIFFRACTION 3.31 Å
Organisms	Danio rerio
Macromolecule	Phosphatidylinositol-4-phosphate 5-kinase, type I, alpha (protein)

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4XAE \| pdb_00004xae	Download File View File

Structure of Feruloyl-CoA 6-hydroxylase (F6H) from Arabidopsis thaliana

Zhou, D., Kandavelu, P., Zhang, H., Wang, B.C., Rose, J., Yan, Y.

(2015) Sci Rep 5: 10355-10355

Released	2015-06-10
Method	X-RAY DIFFRACTION 2.769 Å
Organisms	Arabidopsis thaliana
Macromolecule	Feruloyl CoA ortho-hydroxylase 1 (protein)
Unique Ligands	NA

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5DH3 \| pdb_00005dh3	Download File View File

Crystal structure of MST2 in complex with XMU-MP-1

Kong, L.L., Yun, C.H.

(2016) Sci Transl Med 8: 352ra108-352ra108

Released	2016-08-31
Method	X-RAY DIFFRACTION 2.468 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase 3 (protein)
Unique Ligands	5BS, CL, SO4

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5T15 \| pdb_00005t15	Download File View File

Structural basis for gating and activation of RyR1 (30 uM Ca2+ dataset, all particles)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

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5T9M \| pdb_00005t9m	Download File View File

Structure of rabbit RyR1 (Ca2+-only dataset, class 1)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

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5T9N \| pdb_00005t9n	Download File View File

Structure of rabbit RyR1 (Ca2+-only dataset, class 2)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

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5T9R \| pdb_00005t9r	Download File View File

Structure of rabbit RyR1 (Ca2+-only dataset, class 3)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 5.8 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

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5T9S \| pdb_00005t9s	Download File View File

Structure of rabbit RyR1 (Ca2+-only dataset, class 4)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

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5T9V \| pdb_00005t9v	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 1)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CA, CFF, ZN

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5TA3 \| pdb_00005ta3	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 2)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CA, CFF, ZN

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5TAL \| pdb_00005tal	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 1&2)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CA, CFF, ZN

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5TAM \| pdb_00005tam	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 4)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CA, CFF, ZN

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5TAN \| pdb_00005tan	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 3)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CA, CFF, ZN

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5TAP \| pdb_00005tap	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/EGTA dataset, all particles)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CFF, ZN

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5TAQ \| pdb_00005taq	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 3&4)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CA, CFF, ZN

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5TAS \| pdb_00005tas	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/EGTA dataset, class 1)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 6.2 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CFF, ZN

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5TAT \| pdb_00005tat	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/EGTA dataset, class 2)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CFF, ZN

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5TAU \| pdb_00005tau	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/EGTA dataset, class 3)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 6.2 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CFF, ZN

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5TAV \| pdb_00005tav	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/EGTA dataset, class 4)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CFF, ZN

Explore in 3D

5TAW \| pdb_00005taw	Download File View File

Structure of rabbit RyR1 (ryanodine dataset, all particles)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

Explore in 3D

5TAX \| pdb_00005tax	Download File View File

Structure of rabbit RyR1 (ryanodine dataset, class 1)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 6.6 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

Explore in 3D

5TAY \| pdb_00005tay	Download File View File

Structure of rabbit RyR1 (ryanodine dataset, class 2)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.6 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

Explore in 3D

5TAZ \| pdb_00005taz	Download File View File

Structure of rabbit RyR1 (ryanodine dataset, class 3)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

Explore in 3D

5TB0 \| pdb_00005tb0	Download File View File

Structure of rabbit RyR1 (EGTA-only dataset, all particles)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ZN

1 to 25 of 175 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1R8I | pdb_00001r8i

4TZ7 | pdb_00004tz7

4XAE | pdb_00004xae

5DH3 | pdb_00005dh3

5T15 | pdb_00005t15

5T9M | pdb_00005t9m

5T9N | pdb_00005t9n

5T9R | pdb_00005t9r

5T9S | pdb_00005t9s

5T9V | pdb_00005t9v

5TA3 | pdb_00005ta3

5TAL | pdb_00005tal

5TAM | pdb_00005tam

5TAN | pdb_00005tan

5TAP | pdb_00005tap

5TAQ | pdb_00005taq

5TAS | pdb_00005tas

5TAT | pdb_00005tat

5TAU | pdb_00005tau

5TAV | pdb_00005tav

5TAW | pdb_00005taw

5TAX | pdb_00005tax

5TAY | pdb_00005tay

5TAZ | pdb_00005taz

5TB0 | pdb_00005tb0