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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Zhu, J."

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Search Summary

This query matches 624 Structures.

Refinements

Structure Determination Methodology

experimental (624)

Scientific Name of Source Organism

	Homo sapiens (349)
	Mus musculus (91)
	Human immunodeficiency virus 1 (40)
	Sus scrofa (26)
	synthetic construct (18)
	Escherichia coli (15)
	Human respiratory syncytial virus A2 (11)
	Severe acute respiratory syndrome coronavirus 2 (11)
	Rattus norvegicus (10)
	Bos taurus (8)

More...

Taxonomy

	Eukaryota (464)
	Bacteria (97)
	Riboviria (93)
	other sequences (21)
	Duplodnaviria (9)
	Varidnaviria (8)
	Archaea (7)
	unclassified bacterial viruses (7)

Experimental Method

	X-RAY DIFFRACTION (504)
	ELECTRON MICROSCOPY (108)
	SOLUTION NMR (12)

Polymer Entity Type

	Protein (624)
	DNA (22)
	RNA (12)

Refinement Resolution (Å)

	1.0 - 1.5 (38)
	1.5 - 2.0 (134)
	2.0 - 2.5 (163)
	2.5 - 3.0 (120)
	3.0 - 3.5 (88)
	3.5 - 4.0 (46)
	4.0 - 4.5 (8)
	> 4.5 (15)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (42)
	2010 - 2014 (137)
	2015 - 2019 (178)
	2020 - 2024 (233)
	2025 - 2029 (30)

Enzyme Classification Name

	Translocases (38)
	Transferases (104)
	Oxidoreductases (29)
	Hydrolases (64)
	Lyases (10)
	Isomerases (3)
	Ligases (3)

Membrane Protein Annotation

	PDBTM (25)
	mpstruc (18)
	OPM (16)
	MemProtMD (11)

Symmetry Type

	Asymmetric (488)
	Cyclic (123)
	Dihedral (15)
	Helical (4)
	Icosahedral (3)
	Tetrahedral (2)

SCOP Classification

	All beta proteins (90)
	All alpha proteins (87)
	Artifacts (41)
	Alpha and beta proteins (a/b) (29)
	Alpha and beta proteins (a+b) (43)
	Multi-domain proteins (alpha and beta) (5)
	Small proteins (5)
	Membrane and cell surface proteins and peptides (1)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 624 Structures

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1P4A \| pdb_00001p4a	Download File View File

Crystal Structure of the PurR complexed with cPRPP

Bera, A.K., Zhu, J., Zalkin, H., Smith, J.L.

(2003) J Bacteriol 185: 4099-4109

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Bacillus subtilis
Macromolecule	Pur operon repressor (protein)
Unique Ligands	PCP

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1T48 \| pdb_00001t48	Download File View File

Allosteric Inhibition of Protein Tyrosine Phosphatase 1B

Wiesmann, C., Barr, K.J., Kung, J., Zhu, J., Shen, W., Fahr, B.J., Zhong, M., Erlanson, D.A., Taylor, L., Randal, M., McDowell, R.S., Hansen, S.K.

(2004) Nat Struct Mol Biol 11: 730-737

Released	2004-07-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Protein-tyrosine phosphatase, non-receptor type 1 (protein)
Unique Ligands	BB3

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1T49 \| pdb_00001t49	Download File View File

Allosteric Inhibition of Protein Tyrosine Phosphatase 1B

Wiesmann, C., Barr, K.J., Kung, J., Zhu, J., Shen, W., Fahr, B.J., Zhong, M., Taylor, L., Randal, M., McDowell, R.S., Hansen, S.K.

(2004) Nat Struct Mol Biol 11: 730-737

Released	2004-07-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Protein-tyrosine phosphatase, non-receptor type 1 (protein)
Unique Ligands	892, MG

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1T4J \| pdb_00001t4j	Download File View File

Allosteric Inhibition of Protein Tyrosine Phosphatase 1B

Wiesmann, C., Barr, K.J., Kung, J., Zhu, J., Shen, W., Fahr, B.J., Zhong, M., Taylor, L., Randal, M., McDowell, R.S., Hansen, S.K.

(2004) Nat Struct Mol Biol 11: 730-737

Released	2004-07-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Protein-tyrosine phosphatase, non-receptor type 1 (protein)
Unique Ligands	FRJ

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1YCL \| pdb_00001ycl	Download File View File

Crystal Structure of B. subtilis LuxS in Complex with a Catalytic 2-Ketone Intermediate

Rajan, R., Zhu, J., Hu, X., Pei, D., Bell, C.E.

(2005) Biochemistry 44: 3745-3753

Released	2005-03-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus subtilis
Macromolecule	S-ribosylhomocysteinase (protein)
Unique Ligands	CO, KRI, SO4

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1ZNN \| pdb_00001znn	Download File View File

Structure of the synthase subunit of PLP synthase

Zhu, J., Burgner, J.W., Harms, E., Belitsky, B.R., Smith, J.L.

(2005) J Biological Chem 280: 27914-27923

Released	2005-05-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	PLP SYNTHASE (protein)
Unique Ligands	MRD, SO4

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2E0H \| pdb_00002e0h	Download File View File

Solution Structure of BmKalphaIT01, an alpha-insect toxin from the Venom of the Chinese Scorpion Buthus martensi Karsch

Tong, X.T., Chen, X., Wu, H.M.

(2007) Biochemistry 46: 11322-11330

Released	2007-10-16
Method	SOLUTION NMR
Organisms	Olivierus martensii
Macromolecule	Alpha-neurotoxin TX12 (protein)

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2FQO \| pdb_00002fqo	Download File View File

Crystal structure of B. subtilis LuxS in complex with (2S)-2-Amino-4-[(2R,3R)-2,3-dihydroxy-3-N- hydroxycarbamoyl-propylmercapto]butyric acid

Shen, G., Rajan, R., Zhu, J., Bell, C.E., Pei, D.

(2006) J Med Chem 49: 3003-3011

Released	2006-05-30
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Bacillus subtilis
Macromolecule	S-ribosylhomocysteine lyase (protein)
Unique Ligands	CO, HYI, SO4

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2FQT \| pdb_00002fqt	Download File View File

Crystal structure of B.subtilis LuxS in complex with (2S)-2-Amino-4-[(2R,3S)-2,3-dihydroxy-3-N-hydroxycarbamoyl-propylmercapto]butyric acid

Shen, G., Rajan, R., Zhu, J., Bell, C.E., Pei, D.

(2006) J Med Chem 49: 3003-3011

Released	2006-05-30
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Bacillus subtilis
Macromolecule	S-ribosylhomocysteine lyase (protein)
Unique Ligands	CO, H1D, SO4

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2FYZ \| pdb_00002fyz	Download File View File

Structural of Mumps virus fusion protein core

Lou, Z., Xu, Y., Liu, Y., Rao, Z.

(2006) Biochem Biophys Res Commun 348: 916-922

Released	2007-04-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mumps orthorubulavirus
Macromolecule	Fusion glycoprotein F0 (protein)

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2IC7 \| pdb_00002ic7	Download File View File

Crystal Structure of Maltose Transacetylase from Geobacillus kaustophilus

Liu, Z.J., Li, Y., Chen, L., Zhu, J., Rose, J.P., Ebihara, A., Yokoyama, S., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI), RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-11-07
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Geobacillus kaustophilus
Macromolecule	Maltose transacetylase (protein)

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2IEL \| pdb_00002iel	Download File View File

CRYSTAL STRUCTURE OF TT0030 from Thermus Thermophilus

Zhu, J., Huang, J., Stepanyuk, G., Chen, L., Chang, J., Zhao, M., Xu, H., Liu, Z.J., Rose, J.P., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2006-11-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Thermus thermophilus
Macromolecule	Hypothetical Protein TT0030 (protein)

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2KBH \| pdb_00002kbh	Download File View File

solution structure of BmKalphaTx11 (major conformation)

Zhu, J., Wu, H.

(2010) Biochem Biophys Res Commun 391: 627-633

Released	2009-12-08
Method	SOLUTION NMR
Organisms	Olivierus martensii
Macromolecule	Toxin Bmka2 (protein)

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2KBJ \| pdb_00002kbj	Download File View File

solution structure of BmKalphaTx11 (minor conformation)

Zhu, J., Wu, H.

(2010) Biochem Biophys Res Commun 391: 627-633

Released	2009-12-08
Method	SOLUTION NMR
Organisms	Olivierus martensii
Macromolecule	Toxin Bmka2 (protein)

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2KBK \| pdb_00002kbk	Download File View File

Solution Structure of BmK-M10

Zhu, J., Wu, H.

To be published

Released	2009-12-22
Method	SOLUTION NMR
Organisms	Olivierus martensii
Macromolecule	Neurotoxin BmK-M10 (protein)

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2LIR \| pdb_00002lir	Download File View File

NMR Solution Structure of Yeast Iso-1-cytochrome c Mutant P71H in oxidized states

Lan, W., Wang, Z., Yang, Z., Zhu, J., Ying, T., Jiang, X., Zhang, X., Wu, H., Liu, M., Tan, X., Cao, C., Huang, Z.X.

(2011) PLoS One 6: e27219-e27219

Released	2011-12-07
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Cytochrome c iso-1 (protein)
Unique Ligands	HEC

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2LIT \| pdb_00002lit	Download File View File

NMR Solution Structure of Yeast Iso-1-cytochrome c Mutant P71H in reduced states

Lan, W., Wang, Z., Yang, Z., Zhu, J., Ying, T., Jiang, X., Zhang, X., Wu, H., Liu, M., Tan, X., Cao, C., Huang, Z.X.

(2011) PLoS One 6: e27219-e27219

Released	2011-12-07
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Cytochrome c iso-1 (protein)
Unique Ligands	HEC

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2P17 \| pdb_00002p17	Download File View File

Crystal structure of GK1651 from Geobacillus kaustophilus

Zhu, J., Swindell II, J.T., Chen, L., Ebihara, A., Shinkai, A., Kuramitsu, S., Yokoyama, S., Fu, Z.-Q., Rose, J.P., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-05-01
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Geobacillus kaustophilus HTA426
Macromolecule	Pirin-like protein (protein)
Unique Ligands	FE

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2P2O \| pdb_00002p2o	Download File View File

Crystal structure of maltose transacetylase from Geobacillus kaustophilus P2(1) crystal form

To be published

Released	2007-05-15
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Geobacillus kaustophilus HTA426
Macromolecule	Maltose transacetylase (protein)

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2P3E \| pdb_00002p3e	Download File View File

Crystal structure of AQ1208 from Aquifex aeolicus

Zhu, J., Swindell II, J.T., Chen, L., Ebihara, A., Shinkai, A., Kuramitsu, S., Yokoyama, S., Fu, Z.-Q., Rose, J.P., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-05-01
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Diaminopimelate decarboxylase (protein)

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2P5Y \| pdb_00002p5y	Download File View File

Crystal structure of Thermus thermophilus HB8 UDP-glucose 4-epimerase complex with NAD

Fu, Z.-Q., Chen, L., Ebihara, A., Shinkai, A., Kuramitsu, S., Yokoyama, S., Zhu, J., Swindell, J.T., Chrzas, J., Rose, J.P., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-04-17
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Thermus thermophilus HB8
Macromolecule	UDP-glucose 4-epimerase (protein)
Unique Ligands	NAD

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2P62 \| pdb_00002p62	Download File View File

Crystal structure of hypothetical protein PH0156 from Pyrococcus horikoshii OT3

Fu, Z.-Q., Chen, L., Zhu, J., Swindell, J.T., Ebihara, A., Shinkai, A., Kuramitsu, S., Yokoyama, S., Chrzas, J., Rose, J.P., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-04-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Hypothetical protein PH0156 (protein)

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2P8T \| pdb_00002p8t	Download File View File

Hypothetical protein PH0730 from Pyrococcus horikoshii OT3

Chen, L., Zhao, M., Ebihara, A., Shinkai, A., Kuramitsu, S., Yokoyama, S., Zhu, J., Swindell, J.T., Fu, Z.-Q., Chrzas, J., Rose, J.P., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-04-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Hypothetical protein PH0730 (protein)

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2P9M \| pdb_00002p9m	Download File View File

Crystal structure of conserved hypothetical protein MJ0922 from Methanocaldococcus jannaschii DSM 2661

Zhao, M., Ebihara, A., Shinkai, A., Kuramitsu, S., Yokoyama, S., Zhu, J., Swindell II, J.T., Chen, L., Fu, Z.-Q., Charz, J., Rose, J.P., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-07-03
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Hypothetical protein MJ0922 (protein)

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2PH3 \| pdb_00002ph3	Download File View File

Crystal structure of 3-oxoacyl-[acyl carrier protein] reductase TTHA0415 from Thermus thermophilus

Swindell II, J.T., Chen, L., Zhu, J., Ebihara, A., Shinkai, A., Kuramitsu, S., Yokoyama, S., Fu, Z.-Q., Chrzas, J., Rose, J.P., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-05-08
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Thermus thermophilus HB8
Macromolecule	3-oxoacyl-[acyl carrier protein] reductase (protein)

1 to 25 of 624 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1P4A | pdb_00001p4a

1T48 | pdb_00001t48

1T49 | pdb_00001t49

1T4J | pdb_00001t4j

1YCL | pdb_00001ycl

1ZNN | pdb_00001znn

2E0H | pdb_00002e0h

2FQO | pdb_00002fqo

2FQT | pdb_00002fqt

2FYZ | pdb_00002fyz

2IC7 | pdb_00002ic7

2IEL | pdb_00002iel

2KBH | pdb_00002kbh

2KBJ | pdb_00002kbj

2KBK | pdb_00002kbk

2LIR | pdb_00002lir

2LIT | pdb_00002lit

2P17 | pdb_00002p17

2P2O | pdb_00002p2o

2P3E | pdb_00002p3e

2P5Y | pdb_00002p5y

2P62 | pdb_00002p62

2P8T | pdb_00002p8t

2P9M | pdb_00002p9m

2PH3 | pdb_00002ph3