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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 55 Structures.

Refinements

Structure Determination Methodology

experimental (55)

Scientific Name of Source Organism

	Influenza A virus (10)
	H6N1 subtype (3)
	Homo sapiens (3)
	Salmonella enterica subsp. enterica serovar Typhi str. CT18 (3)
	Influenza A virus (A/Hong Kong/1/1968(H3N2)) (2)
	Influenza A virus (A/Indonesia/5/2005(H5N1)) (2)
	Influenza A virus (A/Vietnam/1194/2004(H5N1)) (2)
	Influenza A virus (A/harbour seal/Germany/1/2014(H10N7)) (2)
	Influenza A virus (A/turkey/Turkey/1/2005(H5N1)) (2)
	B-lymphotropic polyomavirus (1)

More...

Taxonomy

	Riboviria (42)
	Bacteria (7)
	Eukaryota (3)
	Monodnaviria (3)

Experimental Method

	X-RAY DIFFRACTION (54)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (55)

Refinement Resolution (Å)

	1.5 - 2.0 (8)
	2.0 - 2.5 (19)
	2.5 - 3.0 (24)
	3.0 - 3.5 (4)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (26)
	2015 - 2019 (17)
	2020 - 2024 (9)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (2)
	Transferases (1)

Symmetry Type

	Cyclic (50)
	Asymmetric (6)
	Dihedral (1)
	Icosahedral (1)

SCOP Classification

	All beta proteins (42)
	Coiled coil proteins (36)
	Artifacts (16)
	All alpha proteins (1)

AllSelected

1 to 25 of 55 Structures

Page 1 of 3

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1RVX \| pdb_00001rvx	Download File View File

1934 H1 Hemagglutinin in complex with LSTA

Gamblin, S.J., Haire, L.F., Russell, R.J., Stevens, D.J., Xiao, B., Ha, Y., Vasisht, N., Steinhauer, D.A., Daniels, R.S., Elliot, A., Wiley, D.C., Skehel, J.J.

(2004) Science 303: 1838-1842

Released	2004-03-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Hemagglutinin (protein) hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

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2WR3 \| pdb_00002wr3	Download File View File

structure of influenza H2 duck Ontario hemagglutinin with avian receptor

Liu, J., Stevens, D.J., Haire, L.F., Walker, P.A., Coombs, P.J., Russell, R.J., Gamblin, S.J., Skehel, J.J.

(2009) Proc Natl Acad Sci U S A 106: 17175

Released	2009-09-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	unidentified influenza virus
Macromolecule	HEMAGGLUTININ (protein)
Unique branched monosaccharides	GAL, NAG, SIA

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3M5H \| pdb_00003m5h	Download File View File

Crystal structure of a H7 influenza virus hemagglutinin complexed with 3SLN

Yang, H., Chen, L.M., Carney, P.J., Donis, R.O., Stevens, J.

(2010) PLoS Pathog 6: e1001081-e1001081

Released	2010-09-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Influenza A virus (A/environment/New York/30732-1/2005(H7N2))
Macromolecule	Hemagglutinin (protein)
Unique Ligands	GOL, NAG
Unique branched monosaccharides	GAL, NAG, SIA

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3UBQ \| pdb_00003ubq	Download File View File

Influenza hemagglutinin from the 2009 pandemic in complex with ligand 3SLN

Xu, R., Wilson, I.A.

(2012) J Virol 86: 982-990

Released	2011-11-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Influenza A virus (A/California/04/2009(H1N1))
Macromolecule	hemagglutinin HA1 (protein) hemagglutinin HA2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

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3VKO \| pdb_00003vko	Download File View File

Galectin-8 N-terminal domain in complex with sialyllactosamine

Kamitori, S., Yoshida, H.

(2012) FEBS J 279: 3937-3951

Released	2012-09-12
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Homo sapiens
Macromolecule	Galectin-8 (protein)
Unique Ligands	CL
Unique branched monosaccharides	GAL, NAG, SIA

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3ZPB \| pdb_00003zpb	Download File View File

INFLUENZA VIRUS (VN1194) H5 E190D mutant HA with LSTa

Liu, J., Stevens, D.J., Gamblin, S.J., Skehel, J.J.

(2013) Virology 447: 326

Released	2013-10-02
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Influenza A virus
Macromolecule	HAEMAGGLUTININ (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

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4BGY \| pdb_00004bgy	Download File View File

H5 (VN1194) Influenza Virus Haemagglutinin in Complex with Avian Receptor Analogue 3'-SLN

Xiong, X., Coombs, P., Martin, S.R., Liu, J., Xiao, H., McCauley, J.W., Locher, K., Walker, P.A., Collins, P.J., Kawaoka, Y., Skehel, J.J., Gamblin, S.J.

(2013) Nature 497: 392

Released	2013-04-24
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Influenza A virus (A/Vietnam/1194/2004(H5N1))
Macromolecule	HEMAGGLUTININ (protein)
Unique Ligands	EPE
Unique branched monosaccharides	GAL, NAG, SIA

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4BH1 \| pdb_00004bh1	Download File View File

H5 (tyTy) Influenza Virus Haemagglutinin in Complex with Avian Receptor Analogue 3'-SLN

Xiong, X., Coombs, P.J., Martin, S.R., Liu, J., Xiao, H., McCauley, J.W., Locher, K., Walker, P.A., Collins, P.J., Kawaoka, Y., Skehel, J.J., Gamblin, S.J.

(2013) Nature 497: 392

Released	2013-04-24
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Influenza A virus (A/turkey/Turkey/1/2005(H5N1))
Macromolecule	HEMAGGLUTININ (protein)
Unique Ligands	NAG, PO4
Unique branched monosaccharides	GAL, NAG, SIA

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4BH4 \| pdb_00004bh4	Download File View File

Haemagglutinin from a Transmissible Mutant H5 Influenza Virus in Complex with Avian Receptor Analogue 3'-SLN

Xiong, X., Coombs, P.J., Martin, S.R., Liu, J., Xiao, H., McCauley, J.W., Locher, K., Walker, P.A., Collins, P.J., Kawaoka, Y., Skehel, J.J., Gamblin, S.J.

(2013) Nature 497: 392

Released	2013-04-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	HEMAGGLUTININ (protein)
Unique Ligands	EPE, NAG
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG, SIA

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4BSD \| pdb_00004bsd	Download File View File

Human H7N9 Influenza Virus Haemagglutinin (with Asn-133 Glycosylation) in Complex with Avian Receptor Analogue 3'-SLN

Xiong, X., Haire, L.F., Martin, S.R., Wharton, S.A., Daniels, R.S., Bennett, M.S., McCauley, J.W., Collins, P.J., Walker, P.A., Skehel, J.J., Gamblin, S.J.

(2013) Nature 499: 496

Released	2013-07-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Influenza A virus
Macromolecule	HEMAGGLUTININ (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	GAL, NAG, SIA

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4BSF \| pdb_00004bsf	Download File View File

Human H7N9 Influenza Virus Haemagglutinin in Complex with Avian Receptor Analogue 3'-SLN

Xiong, X., Haire, L.F., Martin, S.R., Wharton, S.A., Daniels, R.S., Bennett, M.S., McCauley, J.W., Collins, P.J., Walker, P.A., Skehel, J.J., Gamblin, S.J.

(2013) Nature 499: 496

Released	2013-07-03
Method	X-RAY DIFFRACTION 2.76 Å
Organisms	Influenza A virus
Macromolecule	HAEMAGGLUTININ HA1 (protein) HAEMAGGLUTININ HA2 (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	GAL, NAG, SIA

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4BSI \| pdb_00004bsi	Download File View File

H7N3 Avian Influenza Virus Haemagglutinin in Complex with Avian Receptor Analogue 3'-SLN

Xiong, X., Haire, L.F., Martin, S.R., Wharton, S.A., Daniels, R.S., Bennett, M.S., McCauley, J.W., Collins, P.J., Walker, P.A., Skehel, J.J., Gamblin, S.J.

(2013) Nature 499: 496

Released	2013-07-03
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Influenza A virus (A/turkey/Italy/214845/2002(H7N3))
Macromolecule	HEMAGGLUTININ (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	GAL, NAG, SIA

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4CQW \| pdb_00004cqw	Download File View File

H5 (tyTy) Del133/Ile155Thr Mutant Haemagglutinin in Complex with Avian Receptor Analogue 3'SLN

Xiong, X., Xiao, H., Martin, S.R., Coombs, P.J., Liu, J., Collins, P.J., Vachieri, S.G., Walker, P.A., Lin, Y.P., McCauley, J.W., Gamblin, S.J., Skehel, J.J.

(2014) Virology 456: 179

Released	2014-05-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Influenza A virus (A/turkey/Turkey/1/2005(H5N1))
Macromolecule	HAEMAGGLUTININ HA1 (protein) HAEMAGGLUTININ HA2 (protein)
Unique Ligands	NAG, PO4
Unique branched monosaccharides	GAL, NAG, SIA

Explore in 3D

4DJ7 \| pdb_00004dj7	Download File View File

Structure of the hemagglutinin complexed with 3SLN from a highly pathogenic H7N7 influenza virus

Yang, H., Carney, P.J., Donis, R.O., Stevens, J.

(2012) J Virol 86: 8645-8652

Released	2012-06-20
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Influenza A virus (A/Netherlands/219/2003(H7N7))
Macromolecule	Hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

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4EN7 \| pdb_00004en7	Download File View File

Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-3-sialyllactosamine

Yamashita, S., Yoshida, H., Tonozuka, T., Nishikawa, A., Kamitori, S.

(2012) FEBS Lett 586: 2404-2410

Released	2012-06-06
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Clostridium botulinum
Macromolecule	Hemagglutinin components HA-22/23/53 (protein)
Unique Ligands	MRD
Unique branched monosaccharides	GAL, NAG, SIA

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4FMI \| pdb_00004fmi	Download File View File

Merkel cell polyomavirus VP1 in complex with 3'-sialyllactosamine

Neu, U., Hengel, H., Stehle, T.

(2012) PLoS Pathog 8: e1002738-e1002738

Released	2012-09-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Merkel cell polyomavirus
Macromolecule	VP1 (protein)
Unique Ligands	CL, GOL, SIA
Unique branched monosaccharides	GAL, NAG, SIA

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4GZW \| pdb_00004gzw	Download File View File

N2 neuraminidase D151G mutant of A/Tanzania/205/2010 H3N2 in complex with avian sialic acid receptor

Zhu, X., Wilson, I.A.

(2012) J Virol 86: 13371-13383

Released	2012-10-17
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	H3N2 subtype
Macromolecule	neuraminidase (protein)
Unique Ligands	CA, NAG, SIA
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG, SIA

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4JUH \| pdb_00004juh	Download File View File

Crystal structure of 1918 pandemic influenza virus hemagglutinin mutant D225G complexed with avian receptor analogue LSTa

Zhang, W., Shi, Y., Qi, J., Gao, F., Li, Q., Fan, Z., Yan, J., Gao, G.F.

(2013) J Virol 87: 5949-5958

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.805 Å
Organisms	Influenza A virus (A/South Carolina/1/1918(H1N1))
Macromolecule	Hemagglutinin (protein)
Unique branched monosaccharides	GAL, NAG, SIA

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4K63 \| pdb_00004k63	Download File View File

Structure of an avian influenza H5 hemagglutinin from the influenza virus complexed with avian receptor analog LSTa

Zhang, W., Shi, Y., Lu, X., Shu, Y., Qi, J., Gao, G.F.

(2013) Science 340: 1463-1467

Released	2013-05-22
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Influenza A virus (A/Indonesia/5/2005(H5N1))
Macromolecule	Hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

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4KPS \| pdb_00004kps	Download File View File

Structure and receptor binding specificity of the hemagglutinin H13 from avian influenza A virus H13N6

Lu, X., Qi, J., Shi, Y., Gao, G.

(2013) J Virol 87: 9077-9085

Released	2013-07-03
Method	X-RAY DIFFRACTION 2.587 Å
Organisms	Influenza A virus (A/gull/Maryland/704/1977(H13N6))
Macromolecule	Hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

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4LKG \| pdb_00004lkg	Download File View File

The structure of hemagglutinin from a avian-origin H7N9 influenza virus (A/Shanghai/1/2013) in complex with avian receptor analog 3'SLNLN

Shi, Y., Zhang, W., Wang, F., Qi, J., Song, H., Wu, Y., Gao, F., Zhang, Y., Fan, Z., Gong, W., Wang, D., Shu, Y., Wang, Y., Yan, J., Gao, G.F.

(2013) Science 342: 243-247

Released	2013-11-06
Method	X-RAY DIFFRACTION 2.994 Å
Organisms	Influenza A virus
Macromolecule	hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

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4LKJ \| pdb_00004lkj	Download File View File

The structure of hemagglutinin L226Q mutant (H3 numbering) from a avian-origin H7N9 influenza virus (A/Anhui/1/2013) in complex with avian receptor analog 3'SLNLN

Shi, Y., Zhang, W., Wang, F., Qi, J., Song, H., Wu, Y., Gao, F., Zhang, Y., Fan, Z., Gong, W., Wang, D., Shu, Y., Wang, Y., Yan, J., Gao, G.F.

(2013) Science 342: 243-247

Released	2013-11-06
Method	X-RAY DIFFRACTION 2.798 Å
Organisms	Influenza A virus
Macromolecule	hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

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4MBZ \| pdb_00004mbz	Download File View File

Structure of B-Lymphotropic Polyomavirus VP1 in complex with 3'-sialyllactosamine

Khan, Z.M., Neu, U., Stehle, T.

(2013) PLoS Pathog 9: e1003714-e1003714

Released	2013-12-04
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	B-lymphotropic polyomavirus
Macromolecule	Major Capsid Protein VP1 (protein)
Unique Ligands	CA, CL, EDO, IPA
Unique branched monosaccharides	GAL, NAG, SIA

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4POS \| pdb_00004pos	Download File View File

Structure of Human Polyomavirus 9 VP1 pentamer in complex with 3'-sialyllactosamine

Khan, Z.M., Stehle, T.

(2014) J Virol 88: 6100-6111

Released	2014-04-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human polyomavirus 9
Macromolecule	VP1 (protein)
Unique Ligands	CA, EDO, IPA
Unique branched monosaccharides	GAL, NAG, SIA

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4QY1 \| pdb_00004qy1	Download File View File

Structure of H10 from human-infecting H10N8 in complex with avian receptor

Wang, M., Zhang, W., Qi, J., Wang, F., Zhou, J., Bi, Y., Wu, Y., Sun, H., Liu, J., Huang, C., Li, X., Yan, J., Shu, Y., Shi, Y., Gao, G.F.

(2015) Nat Commun 6: 5600-5600

Released	2015-01-28
Method	X-RAY DIFFRACTION 2.594 Å
Organisms	Influenza A virus
Macromolecule	hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

1 to 25 of 55 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1RVX | pdb_00001rvx

2WR3 | pdb_00002wr3

3M5H | pdb_00003m5h

3UBQ | pdb_00003ubq

3VKO | pdb_00003vko

3ZPB | pdb_00003zpb

4BGY | pdb_00004bgy

4BH1 | pdb_00004bh1

4BH4 | pdb_00004bh4

4BSD | pdb_00004bsd

4BSF | pdb_00004bsf

4BSI | pdb_00004bsi

4CQW | pdb_00004cqw

4DJ7 | pdb_00004dj7

4EN7 | pdb_00004en7

4FMI | pdb_00004fmi

4GZW | pdb_00004gzw

4JUH | pdb_00004juh

4K63 | pdb_00004k63

4KPS | pdb_00004kps

4LKG | pdb_00004lkg

4LKJ | pdb_00004lkj

4MBZ | pdb_00004mbz

4POS | pdb_00004pos

4QY1 | pdb_00004qy1