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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = ADP

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Search Summary

This query matches 4,091 Structures.

Refinements

Structure Determination Methodology

experimental (4,091)

Scientific Name of Source Organism

	Homo sapiens (1,112)
	Escherichia coli (283)
	synthetic construct (243)
	Mus musculus (199)
	Saccharomyces cerevisiae (199)
	Oryctolagus cuniculus (167)
	Sus scrofa (145)
	Bos taurus (126)
	Escherichia coli K-12 (126)
	Saccharomyces cerevisiae S288C (118)

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Taxonomy

	Eukaryota (2,467)
	Bacteria (1,434)
	other sequences (243)
	Archaea (175)
	Riboviria (52)
	Duplodnaviria (33)
	Varidnaviria (26)
	unclassified sequences (16)
	Monodnaviria (7)
	Eukaryota (eukaryotes) (4)

Experimental Method

	X-RAY DIFFRACTION (2,437)
	ELECTRON MICROSCOPY (1,653)
	NEUTRON DIFFRACTION (2)
	FIBER DIFFRACTION (1)

Polymer Entity Type

	Protein (4,089)
	DNA (316)
	RNA (155)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.0 - 1.5 (95)
	1.5 - 2.0 (618)
	2.0 - 2.5 (906)
	2.5 - 3.0 (791)
	3.0 - 3.5 (780)
	3.5 - 4.0 (499)
	4.0 - 4.5 (199)
	> 4.5 (205)

Release Date

	1985 - 1989 (2)
	1990 - 1994 (16)
	1995 - 1999 (79)
	2000 - 2004 (244)
	2005 - 2009 (468)
	2010 - 2014 (612)
	2015 - 2019 (839)
	2020 - 2024 (1,722)
	2025 - 2029 (109)

Enzyme Classification Name

	Hydrolases (1,370)
	Transferases (1,065)
	Translocases (466)
	Ligases (250)
	Oxidoreductases (124)
	Isomerases (115)
	Lyases (56)

Membrane Protein Annotation

	PDBTM (317)
	mpstruc (232)
	OPM (201)
	MemProtMD (141)

Symmetry Type

	Asymmetric (2,679)
	Cyclic (1,098)
	Dihedral (293)
	Helical (148)
	Tetrahedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (867)
	Alpha and beta proteins (a+b) (478)
	All alpha proteins (215)
	All beta proteins (158)
	Artifacts (188)
	Membrane and cell surface proteins and peptides (19)
	Multi-domain proteins (alpha and beta) (10)
	Small proteins (5)
	Coiled coil proteins (6)
	Low resolution protein structures (2)

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AllSelected

1 to 25 of 4,091 Structures

Page 1 of 164

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13PK \| pdb_000013pk	Download File View File

TERNARY COMPLEX OF PHOSPHOGLYCERATE KINASE FROM TRYPANOSOMA BRUCEI

Bernstein, B.E., Michels, P.A.M., Hol, W.G.J.

(1997) Nature 385: 275-278

Released	1997-12-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Trypanosoma brucei
Macromolecule	3-PHOSPHOGLYCERATE KINASE (protein)
Unique Ligands	3PG, ADP, MG, PO4

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1A6E \| pdb_00001a6e	Download File View File

THERMOSOME-MG-ADP-ALF3 COMPLEX

Ditzel, L., Loewe, J., Stock, D., Stetter, K.-O., Huber, H., Huber, R., Steinbacher, S.

(1998) Cell 93: 125-138

Released	1999-03-23
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Thermoplasma acidophilum
Macromolecule	THERMOSOME (ALPHA SUBUNIT) (protein) THERMOSOME (BETA SUBUNIT) (protein)
Unique Ligands	ADP, AF3, MG

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1A9X \| pdb_00001a9x	Download File View File

CARBAMOYL PHOSPHATE SYNTHETASE: CAUGHT IN THE ACT OF GLUTAMINE HYDROLYSIS

Thoden, J., Holden, H.

(1998) Biochemistry 37: 8825-8831

Released	1998-10-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	CARBAMOYL PHOSPHATE SYNTHETASE (LARGE CHAIN) (protein) CARBAMOYL PHOSPHATE SYNTHETASE (SMALL CHAIN) (protein)
Unique Ligands	ADP, CL, K, MN, NET, ORN, PO4

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1AM1 \| pdb_00001am1	Download File View File

ATP BINDING SITE IN THE HSP90 MOLECULAR CHAPERONE

Pearl, L.H., Roe, S.M., Prodromou, C.

(1997) Cell 90: 65-75

Released	1998-06-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	HEAT SHOCK PROTEIN 90 (protein)
Unique Ligands	ADP

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1AMW \| pdb_00001amw	Download File View File

ADP BINDING SITE IN THE HSP90 MOLECULAR CHAPERONE

Pearl, L.H., Roe, S.M., Prodromou, C.

(1997) Cell 90: 65-75

Released	1998-06-24
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	HEAT SHOCK PROTEIN 90 (protein)
Unique Ligands	ADP

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1AO0 \| pdb_00001ao0	Download File View File

GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE FROM B. SUBTILIS COMPLEXED WITH ADP AND GMP

Tomchick, D.R., Smith, J.L.

(1997) Biochemistry 36: 10718-10726

Released	1997-11-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bacillus subtilis
Macromolecule	GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE AMIDOTRANSFERASE (protein)
Unique Ligands	5GP, ADP, MG, SF4

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1AON \| pdb_00001aon	Download File View File

CRYSTAL STRUCTURE OF THE ASYMMETRIC CHAPERONIN COMPLEX GROEL/GROES/(ADP)7

Xu, Z., Horwich, A.L., Sigler, P.B.

(1997) Nature 388: 741-750

Released	1997-10-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	GROEL (protein) GROEL/GROES COMPLEX (protein)
Unique Ligands	ADP, MG

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1ATR \| pdb_00001atr	Download File View File

THREONINE 204 OF THE CHAPERONE PROTEIN HSC70 INFLUENCES THE STRUCTURE OF THE ACTIVE SITE BUT IS NOT ESSENTIAL FOR ATP HYDROLYSIS

O'Brien, M.C., Mckay, D.B.

(1993) J Biological Chem 268: 24323-24329

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Bos taurus
Macromolecule	HEAT-SHOCK COGNATE 70 KD PROTEIN (protein)
Unique Ligands	ADP, MG, PO4

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1ATS \| pdb_00001ats	Download File View File

THREONINE 204 OF THE CHAPERONE PROTEIN HSC70 INFLUENCES THE STRUCTURE OF THE ACTIVE SITE BUT IS NOT ESSENTIAL FOR ATP HYDROLYSIS

O'Brien, M.C., Mckay, D.B.

(1993) J Biological Chem 268: 24323-24329

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Bos taurus
Macromolecule	HEAT-SHOCK COGNATE 70 KD PROTEIN (protein)
Unique Ligands	ADP, MG

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1B4S \| pdb_00001b4s	Download File View File

STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE H122G MUTANT

Meyer, P., Janin, J.

(1999) Biochemistry 38: 4701-4711

Released	1999-06-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Dictyostelium discoideum
Macromolecule	NUCLEOSIDE DIPHOSPHATE KINASE (protein)
Unique Ligands	ADP, MG, PO4

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1B62 \| pdb_00001b62	Download File View File

MUTL COMPLEXED WITH ADP

Wei, Y.

(1999) Cell 97: 85-97

Released	1999-04-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	PROTEIN (MUTL) (protein)
Unique Ligands	ADP, MG

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1B6S \| pdb_00001b6s	Download File View File

STRUCTURE OF N5-CARBOXYAMINOIMIDAZOLE RIBONUCLEOTIDE SYNTHETASE

Thoden, J.B., Kappock, T.J., Stubbe, J., Holden, H.M.

(1999) Biochemistry 38: 15480-15492

Released	1999-11-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (N5-CARBOXYAMINOIMIDAZOLE RIBONUCLEOTIDE SYNTHETASE) (protein)
Unique Ligands	ADP, MG

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1B7T \| pdb_00001b7t	Download File View File

MYOSIN DIGESTED BY PAPAIN

Houdusse, A., Kalabokis, V., Himmel, D., Szent-Gyorgyi, A.G., Cohen, C.

(1999) Cell 97: 459-470

Released	1999-05-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Argopecten irradians
Macromolecule	MYOSIN ESSENTIAL LIGHT CHAIN (protein) MYOSIN HEAVY CHAIN (protein) MYOSIN REGULATORY LIGHT CHAIN (protein)
Unique Ligands	ADP, CA, MG

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1BA0 \| pdb_00001ba0	Download File View File

HEAT-SHOCK COGNATE 70KD PROTEIN 44KD ATPASE N-TERMINAL 1NGE 3

Wilbanks, S.M., Mckay, D.B.

(1998) Biochemistry 37: 7456-7462

Released	1998-07-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	HEAT-SHOCK COGNATE 70KD PROTEIN (protein)
Unique Ligands	ADP, CL, MG, NA, PO4

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1BA1 \| pdb_00001ba1	Download File View File

HEAT-SHOCK COGNATE 70KD PROTEIN 44KD ATPASE N-TERMINAL MUTANT WITH CYS 17 REPLACED BY LYS

Wilbanks, S.M., Mckay, D.B.

(1998) Biochemistry 37: 7456-7462

Released	1998-07-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bos taurus
Macromolecule	HEAT-SHOCK COGNATE 70KD PROTEIN (protein)
Unique Ligands	ADP, CL, MG, NA

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1BG0 \| pdb_00001bg0	Download File View File

TRANSITION STATE STRUCTURE OF ARGININE KINASE

Zhou, G., Somasundaram, T., Blanc, E., Parthasarathy, G., Ellington, W.R., Chapman, M.S.

(1998) Proc Natl Acad Sci U S A 95: 8449-8454

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Limulus polyphemus
Macromolecule	ARGININE KINASE (protein)
Unique Ligands	ADP, DAR, MG, NO3

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1BG2 \| pdb_00001bg2	Download File View File

HUMAN UBIQUITOUS KINESIN MOTOR DOMAIN

Kull, F.J., Sablin, E.P., Lau, R., Fletterick, R.J., Vale, R.D.

(1996) Nature 380: 550-555

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	KINESIN (protein)
Unique Ligands	ACT, ADP, MG

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1BMF \| pdb_00001bmf	Download File View File

BOVINE MITOCHONDRIAL F1-ATPASE

Abrahams, J.P., Leslie, A.G.W., Lutter, R., Walker, J.E.

(1994) Nature 370: 621-628

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Bos taurus
Macromolecule	BOVINE MITOCHONDRIAL F1-ATPASE (protein)
Unique Ligands	ADP, ANP, MG

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1BR1 \| pdb_00001br1	Download File View File

SMOOTH MUSCLE MYOSIN MOTOR DOMAIN-ESSENTIAL LIGHT CHAIN COMPLEX WITH MGADP.ALF4 BOUND AT THE ACTIVE SITE

Dominguez, R., Trybus, K.M., Cohen, C.

(1998) Cell 94: 559-571

Released	1998-09-09
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Gallus gallus
Macromolecule	MYOSIN (protein)
Unique Ligands	ADP, ALF, MG

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1BR2 \| pdb_00001br2	Download File View File

SMOOTH MUSCLE MYOSIN MOTOR DOMAIN COMPLEXED WITH MGADP.ALF4

Dominguez, R., Trybus, K.M., Cohen, C.

(1998) Cell 94: 559-571

Released	1998-09-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Gallus gallus
Macromolecule	MYOSIN (protein)
Unique Ligands	ADP, ALF, MG

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1BR4 \| pdb_00001br4	Download File View File

SMOOTH MUSCLE MYOSIN MOTOR DOMAIN-ESSENTIAL LIGHT CHAIN COMPLEX WITH MGADP.BEF3 BOUND AT THE ACTIVE SITE

Dominguez, R., Trybus, K.M., Cohen, C.

(1998) Cell 94: 559-571

Released	1998-09-09
Method	X-RAY DIFFRACTION 3.62 Å
Organisms	Gallus gallus
Macromolecule	MYOSIN (protein)
Unique Ligands	ADP, BEF, MG

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1BS1 \| pdb_00001bs1	Download File View File

DETHIOBIOTIN SYNTHETASE COMPLEXED WITH DETHIOBIOTIN, ADP , INORGANIC PHOSPHATE AND MAGNESIUM

Kaeck, H., Sandmark, J., Gibson, K.J., Schneider, G., Lindqvist, Y.

(1998) Protein Sci 7: 2560-2566

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (DETHIOBIOTIN SYNTHETASE) (protein)
Unique Ligands	ADP, DAA, MG

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1BUP \| pdb_00001bup	Download File View File

T13S MUTANT OF BOVINE 70 KILODALTON HEAT SHOCK PROTEIN

Sousa, M.C., Mckay, D.B.

(1998) Biochemistry 37: 15392-15399

Released	1998-09-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (70 KILODALTON HEAT SHOCK PROTEIN) (protein)
Unique Ligands	ADP, CL, K, MG, PO4

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1BYQ \| pdb_00001byq	Download File View File

HSP90 N-TERMINAL DOMAIN BOUND TO ADP-MG

Russo, A.A., Pavletich, N.P.

(1998) J Cell Biol 143: 901-910

Released	1998-10-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (HEAT SHOCK PROTEIN 90) (protein)
Unique Ligands	ADP, MG

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1C30 \| pdb_00001c30	Download File View File

CRYSTAL STRUCTURE OF CARBAMOYL PHOSPHATE SYNTHETASE: SMALL SUBUNIT MUTATION C269S

Thoden, J.B., Huang, X., Raushel, F.M., Holden, H.M.

(1999) Biochemistry 38: 16158-16166

Released	1999-12-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	CARBAMOYL PHOSPHATE SYNTHETASE: LARGE SUBUNIT (protein) CARBAMOYL PHOSPHATE SYNTHETASE: SMALL SUBUNIT (protein)
Unique Ligands	ADP, CL, K, MN, NET, ORN, PO4

1 to 25 of 4,091 Structures

Page 1 of 164

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

13PK | pdb_000013pk

1A6E | pdb_00001a6e

1A9X | pdb_00001a9x

1AM1 | pdb_00001am1

1AMW | pdb_00001amw

1AO0 | pdb_00001ao0

1AON | pdb_00001aon

1ATR | pdb_00001atr

1ATS | pdb_00001ats

1B4S | pdb_00001b4s

1B62 | pdb_00001b62

1B6S | pdb_00001b6s

1B7T | pdb_00001b7t

1BA0 | pdb_00001ba0

1BA1 | pdb_00001ba1

1BG0 | pdb_00001bg0

1BG2 | pdb_00001bg2

1BMF | pdb_00001bmf

1BR1 | pdb_00001br1

1BR2 | pdb_00001br2

1BR4 | pdb_00001br4

1BS1 | pdb_00001bs1

1BUP | pdb_00001bup

1BYQ | pdb_00001byq

1C30 | pdb_00001c30