RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Expression Organism = "Mesocricetus auratus"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 67 Structures.

Refinements

Structure Determination Methodology

experimental (67)

Scientific Name of Source Organism

	Homo sapiens (42)
	Eastern equine encephalitis virus (9)
	Mus musculus (5)
	Foot-and-mouth disease virus O (2)
	Poliovirus 2 (2)
	Vesicular stomatitis Indiana virus (2)
	synthetic construct (2)
	Barmah Forest virus (1)
	Bos taurus (1)
	Bovine enterovirus strain VG-5-27 (1)

More...

Taxonomy

	Eukaryota (50)
	Riboviria (26)
	other sequences (2)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (41)
	ELECTRON MICROSCOPY (26)

Polymer Entity Type

	Protein (67)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (16)
	2.5 - 3.0 (12)
	3.0 - 3.5 (7)
	3.5 - 4.0 (4)
	4.0 - 4.5 (4)
	> 4.5 (17)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (7)
	2000 - 2004 (8)
	2005 - 2009 (11)
	2010 - 2014 (5)
	2015 - 2019 (14)
	2020 - 2024 (18)
	2025 - 2029 (3)

Enzyme Classification Name

Hydrolases (28)

Membrane Protein Annotation

	OPM (3)
	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (45)
	Icosahedral (19)
	Cyclic (1)
	Dihedral (1)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (16)
	All beta proteins (11)
	Small proteins (5)
	Multi-domain proteins (alpha and beta) (2)
	Alpha and beta proteins (a+b) (2)
	Artifacts (2)

AllSelected

1 to 25 of 67 Structures

Page 1 of 3

Sort by

Explore in 3D

1A5I \| pdb_00001a5i	Download File View File

CATALYTIC DOMAIN OF VAMPIRE BAT (DESMODUS ROTUNDUS) SALIVA PLASMINOGEN ACTIVATOR IN COMPLEX WITH EGR-CMK (GLU-GLY-ARG CHLOROMETHYL KETONE)

Renatus, M., Stubbs, M.T., Bode, W.

(1997) Biochemistry 36: 13483-13493

Released	1999-03-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Desmodus rotundus
Macromolecule	PLASMINOGEN ACTIVATOR (protein)
Unique Ligands	0GJ

Explore in 3D

1AUK \| pdb_00001auk	Download File View File

HUMAN ARYLSULFATASE A

Lukatela, G., Krauss, N., Theis, K., Gieselmann, V., Von Figura, K., Saenger, W.

(1998) Biochemistry 37: 3654-3664

Released	1998-03-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	ARYLSULFATASE A (protein)
Unique Ligands	MG
Unique branched monosaccharides	NAG

Explore in 3D

1BEV \| pdb_00001bev	Download File View File

BOVINE ENTEROVIRUS VG-5-27

Smyth, M., Tate, J., Lyons, C., Hoey, E., Martin, S., Stuart, D.

(1995) Nat Struct Biol 2: 224-231

Released	1998-09-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bovine enterovirus strain VG-5-27
Macromolecule	BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 (protein)
Unique Ligands	MYR, SO4

Explore in 3D

1BP5 \| pdb_00001bp5	Download File View File

HUMAN SERUM TRANSFERRIN, RECOMBINANT N-TERMINAL LOBE, APO FORM

Jeffrey, P.D., Bewley, M.C., Macgillivray, R.T.A., Mason, A.B., Woodworth, R.C., Baker, E.N.

(1998) Biochemistry 37: 13978-13986

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (SERUM TRANSFERRIN) (protein)

Explore in 3D

1BTH \| pdb_00001bth	Download File View File

STRUCTURE OF THROMBIN COMPLEXED WITH BOVINE PANCREATIC TRYPSIN INHIBITOR

Van De Locht, A., Bode, W., Stubbs, M.T.

(1997) EMBO J 16: 2977-2984

Released	1997-12-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus
Macromolecule	BOVINE PANCREATIC TRYPSIN INHIBITOR (protein) THROMBIN (protein)

Explore in 3D

1DAN \| pdb_00001dan	Download File View File

Complex of active site inhibited human blood coagulation factor VIIA with human recombinant soluble tissue factor

Banner, D.W.

(1996) Nature 380: 41-46

Released	1997-09-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	BLOOD COAGULATION FACTOR VIIA heavy chain (protein) BLOOD COAGULATION FACTOR VIIA light chain (protein) SOLUBLE TISSUE FACTOR (protein)
Unique Ligands	0Z6, BGC, CA, CAC, CL, FUC

Explore in 3D

1DTG \| pdb_00001dtg	Download File View File

HUMAN TRANSFERRIN N-LOBE MUTANT H249E

MacGillivray, R.T., Bewley, M.C., Smith, C.A., He, Q.Y., Mason, A.B.

(2000) Biochemistry 39: 1211-1216

Released	2000-01-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	TRANSFERRIN (protein)
Unique Ligands	CO3, FE

Explore in 3D

1FMD \| pdb_00001fmd	Download File View File

THE STRUCTURE AND ANTIGENICITY OF A TYPE C FOOT-AND-MOUTH DISEASE VIRUS

Lea, S., Fry, E., Stuart, D.

(1994) Structure 2: 123-139

Released	1994-08-31
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Foot-and-mouth disease virus
Macromolecule	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) (protein) FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) (protein) FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) (protein) FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) (protein)

Explore in 3D

1FQE \| pdb_00001fqe	Download File View File

CRYSTAL STRUCTURES OF MUTANT (K206A) THAT ABOLISH THE DILYSINE INTERACTION IN THE N-LOBE OF HUMAN TRANSFERRIN

Nurizzo, D., Baker, H.M., Baker, E.N.

(2001) Biochemistry 40: 1616-1623

Released	2001-05-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	SEROTRANSFERRIN (protein)
Unique Ligands	CO3, FE, K

Explore in 3D

1FQF \| pdb_00001fqf	Download File View File

CRYSTAL STRUCTURES OF MUTANT (K296A) THAT ABOLISH THE DILYSINE INTERACTION IN THE N-LOBE OF HUMAN TRANSFERRIN

Nurizzo, D., Baker, H.M., Baker, E.N.

(2001) Biochemistry 40: 1616-1623

Released	2001-05-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	SEROTRANSFERRIN (protein)
Unique Ligands	CO3, FE

Explore in 3D

1LG1 \| pdb_00001lg1	Download File View File

CRYSTAL STRUCTURE OF HUMAN CHITOTRIOSIDASE IN COMPLEX WITH CHITOBIOSE

Fusetti, F., Rozeboom, H.J., Dijkstra, B.W.

(2002) J Biological Chem 277: 25537-25544

Released	2002-09-18
Method	X-RAY DIFFRACTION 2.78 Å
Organisms	Homo sapiens
Macromolecule	chitotriosidase (protein)
Unique branched monosaccharides	NAG

Explore in 3D

1LG2 \| pdb_00001lg2	Download File View File

CRYSTAL STRUCTURE OF HUMAN CHITOTRIOSIDASE IN COMPLEX WITH ETHYLENE GLYCOL

Fusetti, F., Rozeboom, H.J., Dijkstra, B.W.

(2002) J Biological Chem 277: 25537-25544

Released	2002-09-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	chitotriosidase (protein)
Unique Ligands	EDO

Explore in 3D

1M0Z \| pdb_00001m0z	Download File View File

Crystal Structure of the von Willebrand Factor Binding Domain of Glycoprotein Ib alpha

Huizinga, E.G., Tsuji, S., Romijn, R.A.P., Schiphorst, M.E., de Groot, P.G., Sixma, J.J., Gros, P.

(2002) Science 297: 1176-1179

Released	2002-08-28
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Glycoprotein Ib alpha (protein)

Explore in 3D

1M10 \| pdb_00001m10	Download File View File

Crystal structure of the complex of Glycoprotein Ib alpha and the von Willebrand Factor A1 Domain

Huizinga, E.G., Tsuji, S., Romijn, R.A.P., Schiphorst, M.E., de Groot, P.G., Sixma, J.J., Gros, P.

(2002) Science 297: 1176-1179

Released	2002-08-28
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Glycoprotein Ib alpha (protein) von Willebrand Factor (protein)

Explore in 3D

1QFK \| pdb_00001qfk	Download File View File

STRUCTURE OF HUMAN FACTOR VIIA AND ITS IMPLICATIONS FOR THE TRIGGERING OF BLOOD COAGULATION

Pike, A.C.W., Brzozowski, A.M., Roberts, S.M., Olsen, O.H., Persson, E.

(1999) Proc Natl Acad Sci U S A 96: 8925-8930

Released	1999-08-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	COAGULATION FACTOR VIIA HEAVY CHAIN (protein) COAGULATION FACTOR VIIA LIGHT CHAIN (protein)
Unique Ligands	0Z6, CA, FUC, GLC
Unique branched monosaccharides	FUL, NAG

Explore in 3D

1RYO \| pdb_00001ryo	Download File View File

Human serum transferrin, N-lobe bound with oxalate

Halbrooks, P.J., Mason, A.B., Adams, T.E., Briggs, S.K., Everse, S.J.

(2004) J Mol Biology 339: 217-226

Released	2004-05-11
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	Serotransferrin (protein)
Unique Ligands	FE, OXL

Explore in 3D

1W2K \| pdb_00001w2k	Download File View File

tf7a_4380 complex

Banner, D.W., D'Arcy, A., Groebke-Zbinden, K., Ackermann, J., Kirchhofer, D., Ji, Y.-H., Tschopp, T.B., Wallbaum, S., Weber, L.

(2005) Bioorg Med Chem Lett 15: 817

Released	2005-06-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	BLOOD COAGULATION FACTOR VIIA (protein) TISSUE FACTOR (protein)
Unique Ligands	380, BGC, CA, CAC, FUC

Explore in 3D

1Z8I \| pdb_00001z8i	Download File View File

Crystal structure of the thrombin mutant G193A bound to PPACK

Bobofchak, K.M., Pineda, A.O., Mathews, F.S., Di Cera, E.

(2005) J Biological Chem 280: 25644-25650

Released	2005-05-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Thrombin heavy chain (protein) Thrombin light chain (protein)
Unique Ligands	0G6, NA, NAG, ZN

Explore in 3D

2A2Q \| pdb_00002a2q	Download File View File

Complex of Active-site Inhibited Human Coagulation Factor VIIa with Human Soluble Tissue Factor in the Presence of Ca2+, Mg2+, Na+, and Zn2+

Bajaj, S.P., Bajaj, M., Schmidt, A.E., Padmanabhan, K.

(2006) J Biological Chem 281: 24873-24888

Released	2006-07-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor VII (protein) Tissue factor (protein)
Unique Ligands	CA, CL, FUC, GLC, MG, NA, PBZ, ZN

Explore in 3D

2B5T \| pdb_00002b5t	Download File View File

2.1 Angstrom structure of a nonproductive complex between antithrombin, synthetic heparin mimetic SR123781 and two S195A thrombin molecules

Johnson, D.J., Li, W., Luis, S.A., Carrell, R.W., Huntington, J.A.

(2006) J Biological Chem 281: 35478-35486

Released	2006-09-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Antithrombin-III (protein) Thrombin (protein)
Unique Ligands	GOL, NAG, SO4
Unique branched monosaccharides	BMA, FUC, GU0, GU1, GU2, GU3, GU4, GU5, GU6, GU8, GU9, MAN, NAG

Explore in 3D

2BEH \| pdb_00002beh	Download File View File

Crystal structure of antithrombin variant S137A/V317C/T401C with plasma latent antithrombin

Johnson, D.J., Luis, S.A., Huntington, J.A.

(2006) J Biological Chem 281: 35478-35486

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Antithrombin-III (protein)
Unique Ligands	GOL, NAG
Unique branched monosaccharides	MAN, NAG

Explore in 3D

2HAU \| pdb_00002hau	Download File View File

Apo-Human Serum Transferrin (Non-Glycosylated)

Wally, J., Everse, S.J.

(2006) J Biological Chem 281: 24934-24944

Released	2006-06-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Serotransferrin (protein)
Unique Ligands	CIT, GOL

Explore in 3D

2I6Q \| pdb_00002i6q	Download File View File

Complement component C2a

Milder, F.J., Raaijmakers, H.C.A., Vandeputte, D.A.A., Schouten, A., Huizinga, E.G., Romijn, R.A., Hemrika, W., Roos, A., Daha, M.R., Gros, P.

(2006) Structure 14: 1587-1597

Released	2006-10-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Complement C2a fragment (protein)
Unique Ligands	MLI, MN, NAG
Unique branched monosaccharides	BMA, FUC, NAG

Explore in 3D

2I6S \| pdb_00002i6s	Download File View File

Complement component C2a

Milder, F.J., Raaijmakers, H.C.A., Vandeputte, D.A.A., Schouten, A., Huizinga, E.G., Romijn, R.A., Hemrika, W., Roos, A., Daha, M.R., Gros, P.

(2006) Structure 14: 1587-1597

Released	2006-10-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Complement C2a fragment (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUL, NAG