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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "ACP_2665"

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Acidobacterium capsulatum (7)
	Acidobacterium capsulatum ATCC 51196 (7)

Taxonomy

Bacteria (14)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (7)
	2.0 - 2.5 (1)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (1)
	2020 - 2024 (10)

Enzyme Classification Name

Hydrolases (3)

Symmetry Type

	Asymmetric (14)
	Cyclic (3)
	Dihedral (2)

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1 to 14 of 14 Structures

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3VNY \| pdb_00003vny	Download File View File

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum

Momma, M., Fujimoto, Z., Michikawa, M., Ichinose, H., Yoshida, M., Kotake, Y., Biely, P., Tsumuraya, Y., Kaneko, S.

(2012) J Biological Chem 287: 14069-14077

Released	2012-02-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Acidobacterium capsulatum ATCC 51196
Macromolecule	beta-GLUCURONIDASE (protein)
Unique Ligands	GOL, PO4

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3VNZ \| pdb_00003vnz	Download File View File

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with D-glucuronic acid

Momma, M., Fujimoto, Z., Michikawa, M., Ichinose, H., Yoshida, M., Kotake, Y., Biely, P., Tsumuraya, Y., Kaneko, S.

(2012) J Biological Chem 287: 14069-14077

Released	2012-02-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Acidobacterium capsulatum ATCC 51196
Macromolecule	beta-GLUCURONIDASE (protein)
Unique Ligands	BDP, GOL, PO4

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3VO0 \| pdb_00003vo0	Download File View File

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum covalent-bonded with 2-deoxy-2-fluoro-D-glucuronic acid

Momma, M., Fujimoto, Z., Michikawa, M., Ichinose, H., Jongkees, S., Yoshida, M., Kotake, Y., Biely, P., Tsumuraya, Y., Withers, S., Kaneko, S.

(2012) J Biological Chem 287: 14069-14077

Released	2012-02-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Acidobacterium capsulatum ATCC 51196
Macromolecule	beta-Glucuronidase (protein)
Unique Ligands	DNF, GUF, GUZ, PO4

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5L77 \| pdb_00005l77	Download File View File

A glycoside hydrolase mutant with an unreacted activity based probe bound

Jin, Y., Wu, L., Jiang, J.B., Overkleeft, H.S., Davies, G.J.

(2017) Nat Chem Biol 13: 867-873

Released	2017-05-31
Method	X-RAY DIFFRACTION 1.24 Å
Organisms	Acidobacterium capsulatum
Macromolecule	beta-glucuronidase (protein)
Unique Ligands	CL, GOL, GUX, PO4

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7PSH \| pdb_00007psh	Download File View File

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum at 1.24 Angstrom resolution

Armstrong, Z., Wu, L., Davies, G.J.

(2022) Proc Natl Acad Sci U S A 119: e2203167119-e2203167119

Released	2022-08-03
Method	X-RAY DIFFRACTION 1.24 Å
Organisms	Acidobacterium capsulatum ATCC 51196
Macromolecule	Beta-glucuronidase (protein)

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7PSI \| pdb_00007psi	Download File View File

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with covalent inhibitor ME727

Armstrong, Z., Wu, L., Davies, G.J.

(2022) Proc Natl Acad Sci U S A 119: e2203167119-e2203167119

Released	2022-08-03
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Acidobacterium capsulatum ATCC 51196
Macromolecule	Beta-glucuronidase (protein)
Unique Ligands	8I4, SO4

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7PSJ \| pdb_00007psj	Download File View File

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with covalent inhibitor VL166

Armstrong, Z., Wu, L., Davies, G.J.

(2022) Proc Natl Acad Sci U S A 119: e2203167119-e2203167119

Released	2022-08-03
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Acidobacterium capsulatum ATCC 51196
Macromolecule	Beta-glucuronidase (protein)
Unique branched monosaccharides	8I4, NDG

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7PSK \| pdb_00007psk	Download File View File

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with covalent inhibitor GR109

Armstrong, Z., Wu, L., Davies, G.J.

(2022) Proc Natl Acad Sci U S A 119: e2203167119-e2203167119

Released	2022-08-03
Method	X-RAY DIFFRACTION 1.09 Å
Organisms	Acidobacterium capsulatum ATCC 51196
Macromolecule	Beta-glucuronidase (protein)
Unique branched monosaccharides	8I4, NGY

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8B0D \| pdb_00008b0d	Download File View File

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with covalent inhibitor VB151

Armstrong, Z., Davies, G.J.

(2023) ChemMedChem 18: e202200580-e202200580

Released	2022-12-28
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Acidobacterium capsulatum
Macromolecule	beta-glucuronidase from Acidobacterium capsulatum (protein)
Unique Ligands	ALA, OUU, SO4

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8B0E \| pdb_00008b0e	Download File View File

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with covalent inhibitor VB158

Armstrong, Z., Davies, G.J.

(2023) ChemMedChem 18: e202200580-e202200580

Released	2022-12-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Acidobacterium capsulatum
Macromolecule	beta-glucuronidase from Acidobacterium capsulatum (protein)
Unique Ligands	OV3

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8OGX \| pdb_00008ogx	Download File View File

Beta-glucuronidase from Acidobacterium capsulatum in complex with inhibitor R3794

Moran, E.M., Davies, G.J., Chen, C., Nieuwendijk, E.V., Wu, L., Skoulikopoulou, F., Riet, V.V., Overkleeft, H.S., Armstrong, Z.

(2024) J Am Chem Soc 146: 125-133

Released	2024-01-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Acidobacterium capsulatum
Macromolecule	beta-glucuronidase from Acidobacterium capsulatum (protein)
Unique Ligands	PO4, VGO

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8OHT \| pdb_00008oht	Download File View File

Crystal structure of Beta-glucuronidase from Acidobacterium capsulatum in complex with competitive inhibitor derrived from siastatin B

Armstrong, Z., Yurong, C., Wu, L., Overkleeft, H.S., Davies, G.J.

(2024) J Am Chem Soc 146: 125-133

Released	2024-01-10
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Acidobacterium capsulatum
Macromolecule	beta-glucuronidase from Acidobacterium capsulatum (protein)
Unique Ligands	SO4, VON

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8OHU \| pdb_00008ohu	Download File View File

Crystal structure of Beta-glucuronidase from Acidobacterium capsulatum in complex with glucuronic acid configured isofagamine

Armstrong, Z., Yurong, C., Wu, L., Overkleeft, H.S., Davies, G.J.

(2024) J Am Chem Soc 146: 125-133

Released	2024-01-10
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Acidobacterium capsulatum
Macromolecule	beta-glucuronidase from Acidobacterium capsulatum (protein)
Unique Ligands	SJ5

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8OHV \| pdb_00008ohv	Download File View File

Crystal structure of Beta-glucuronidase from Acidobacterium capsulatum in complex with glucuronic acid configured 3-geminal diol iminosugar inhibitor

Armstrong, Z., Yurong, C., Wu, L., Overkleeft, H.S., Davies, G.J.

(2024) J Am Chem Soc 146: 125-133

Released	2024-01-10
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Acidobacterium capsulatum
Macromolecule	beta-glucuronidase from Acidobacterium capsulatum (protein)
Unique Ligands	SO4, VP5

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3VNY | pdb_00003vny

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum

3VNZ | pdb_00003vnz

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with D-glucuronic acid

3VO0 | pdb_00003vo0

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum covalent-bonded with 2-deoxy-2-fluoro-D-glucuronic acid

5L77 | pdb_00005l77

A glycoside hydrolase mutant with an unreacted activity based probe bound

7PSH | pdb_00007psh

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum at 1.24 Angstrom resolution

7PSI | pdb_00007psi

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with covalent inhibitor ME727

7PSJ | pdb_00007psj

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with covalent inhibitor VL166

7PSK | pdb_00007psk

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with covalent inhibitor GR109

8B0D | pdb_00008b0d

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with covalent inhibitor VB151

8B0E | pdb_00008b0e

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with covalent inhibitor VB158

8OGX | pdb_00008ogx

Beta-glucuronidase from Acidobacterium capsulatum in complex with inhibitor R3794

8OHT | pdb_00008oht

Crystal structure of Beta-glucuronidase from Acidobacterium capsulatum in complex with competitive inhibitor derrived from siastatin B

8OHU | pdb_00008ohu

Crystal structure of Beta-glucuronidase from Acidobacterium capsulatum in complex with glucuronic acid configured isofagamine

8OHV | pdb_00008ohv

Crystal structure of Beta-glucuronidase from Acidobacterium capsulatum in complex with glucuronic acid configured 3-geminal diol iminosugar inhibitor

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

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Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

3VNY | pdb_00003vny

3VNZ | pdb_00003vnz

3VO0 | pdb_00003vo0

5L77 | pdb_00005l77

7PSH | pdb_00007psh

7PSI | pdb_00007psi

7PSJ | pdb_00007psj

7PSK | pdb_00007psk

8B0D | pdb_00008b0d

8B0E | pdb_00008b0e

8OGX | pdb_00008ogx

8OHT | pdb_00008oht

8OHU | pdb_00008ohu

8OHV | pdb_00008ohv