RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Gene Name = "ams"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Neisseria polysaccharea (7)
	Escherichia coli (4)
	Escherichia coli K-12 (4)
	Entamoeba histolytica (2)
	Homo sapiens (1)

Taxonomy

	Bacteria (13)
	Eukaryota (2)

Experimental Method

	X-RAY DIFFRACTION (12)
	SOLUTION NMR (2)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (15)
	RNA (3)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (5)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)
	3.5 - 4.0 (2)

Release Date

	2000 - 2004 (2)
	2010 - 2014 (5)
	2015 - 2019 (7)
	2020 - 2024 (1)

Enzyme Classification Name

	Hydrolases (6)
	Transferases (8)
	Ligases (1)
	Lyases (1)

Symmetry Type

	Asymmetric (11)
	Cyclic (3)
	Dihedral (1)

SCOP Classification

	All beta proteins (10)
	Alpha and beta proteins (a/b) (8)
	Artifacts (9)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 15 of 15 Structures

Page 1 of 1

Sort by

Explore in 3D

1SLJ \| pdb_00001slj	Download File View File

Solution structure of the S1 domain of RNase E from E. coli

Schubert, M., Edge, R.E., Lario, P., Cook, M.A., Strynadka, N.C.J., Mackie, G.A., McIntosh, L.P.

(2004) J Mol Biology 341: 37-54

Released	2004-08-17
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Ribonuclease E (protein)

Explore in 3D

1SN8 \| pdb_00001sn8	Download File View File

Crystal structure of the S1 domain of RNase E from E. coli (Pb derivative)

Schubert, M., Edge, R.E., Lario, P., Cook, M.A., Strynadka, N.C.J., Mackie, G.A., McIntosh, L.P.

(2004) J Mol Biology 341: 37-54

Released	2004-08-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Ribonuclease E (protein)
Unique Ligands	PB

Explore in 3D

3UEQ \| pdb_00003ueq	Download File View File

Crystal structure of amylosucrase from Neisseria polysaccharea in complex with turanose

Guerin, F., Pizzut-Serin, S., Potocki-Veronese, G., Guillet, V., Mourey, L., Remaud-Simeon, M., Andre, I., Tranier, S.

(2012) J Biological Chem 287: 6642-6654

Released	2012-01-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Neisseria polysaccharea
Macromolecule	Amylosucrase (protein)
Unique Ligands	OTU, PEG
Unique branched monosaccharides	FRU, GLC

Explore in 3D

4FLO \| pdb_00004flo	Download File View File

Crystal structure of Amylosucrase double mutant A289P-F290C from Neisseria polysaccharea

Guerin, F., Champion, E., Moulis, C., Barbe, S., Tran, T.H., Morel, S., Descroix, K., Monsan, P., Mulard, L.A., Remaud-Simeon, M., Andre, I., Mourey, L., Tranier, S.

(2012) J Am Chem Soc 134: 18677-18688

Released	2012-10-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Neisseria polysaccharea
Macromolecule	Amylosucrase (protein)
Unique Ligands	GOL, P6G, TRS

Explore in 3D

4FLQ \| pdb_00004flq	Download File View File

Crystal structure of Amylosucrase double mutant A289P-F290I from Neisseria polysaccharea.

Guerin, F., Champion, E., Moulis, C., Barbe, S., Tran, T.H., Morel, S., Descroix, K., Monsan, P., Mulard, L.A., Remaud-Simeon, M., Andre, I., Mourey, L., Tranier, S.

(2012) J Am Chem Soc 134: 18677-18688

Released	2012-10-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Neisseria polysaccharea
Macromolecule	Amylosucrase (protein)
Unique Ligands	GOL, PG4, PGE, TRS

Explore in 3D

4FLR \| pdb_00004flr	Download File View File

Crystal structure of Amylosucrase double mutant A289P-F290L from Neisseria polysaccharea

Guerin, F., Champion, E., Moulis, C., Barbe, S., Tran, T.H., Morel, S., Descroix, K., Monsan, P., Mulard, L.A., Remaud-Simeon, M., Andre, I., Mourey, L., Tranier, S.

(2012) J Am Chem Soc 134: 18677-18688

Released	2012-10-31
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Neisseria polysaccharea
Macromolecule	Amylosucrase (protein)
Unique Ligands	1PE, GOL, TRS

Explore in 3D

4FLS \| pdb_00004fls	Download File View File

Crystal structure of Amylosucrase inactive double mutant F290K-E328Q from Neisseria polysaccharea in complex with sucrose.

Guerin, F., Champion, E., Moulis, C., Barbe, S., Tran, T.H., Morel, S., Descroix, K., Monsan, P., Mulard, L.A., Remaud-Simeon, M., Andre, I., Mourey, L., Tranier, S.

(2012) J Am Chem Soc 134: 18677-18688

Released	2012-10-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Neisseria polysaccharea
Macromolecule	Amylosucrase (protein)
Unique Ligands	CL, GOL
Unique branched monosaccharides	FRU, GLC

Explore in 3D

5F6C \| pdb_00005f6c	Download File View File

The structure of E. coli RNase E catalytically inactive mutant with RNA bound

Bandyra, K.J., Luisi, B.F.

(2018) Mol Cell 72: 275-285.e4

Released	2016-12-14
Method	X-RAY DIFFRACTION 3.002 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	Ribonuclease E (protein) RNA (5'-R(PGPU)-3') (nucleic acid) RNA (5'-R(PGPUP*G)-3') (nucleic acid)
Unique Ligands	MG, ZN

Explore in 3D

5N6V \| pdb_00005n6v	Download File View File

Crystal structure of Neisseria polysaccharea amylosucrase mutant derived from Neutral genetic Drift-based engineering

Daude, D., Verges, A., Tranier, S.

(2019) ACS Catal

Released	2018-03-07
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Neisseria polysaccharea
Macromolecule	Amylosucrase (protein)
Unique Ligands	1PE, EPE, FRU, GLC, PGE, TRS
Unique branched monosaccharides	FRU, GLC

Explore in 3D

5N7J \| pdb_00005n7j	Download File View File

Crystal structure of Neisseria polysaccharea amylosucrase mutant efficient for the synthesis of controlled size maltooligosaccharides

Verges, A., Tranier, S.

(2017) Carbohydr Polym 173: 403-411

Released	2017-06-28
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Neisseria polysaccharea
Macromolecule	Amylosucrase (protein)
Unique Ligands	1PE, PG4, TRS
Unique branched monosaccharides	FRU, GLC

Explore in 3D

5OHG \| pdb_00005ohg	Download File View File

enolase in complex with RNase E

Du, D., Luisi, B.F.

(2018) Nucleic Acids Res 46: 387-402

Released	2017-07-26
Method	X-RAY DIFFRACTION 1.997 Å
Organisms	Escherichia coli K-12
Macromolecule	Enolase (protein) Ribonuclease E (protein)
Unique Ligands	MG, NA, PO4

Explore in 3D

5SWK \| pdb_00005swk	Download File View File

Crystal structure of p53 epitope-scaffold based on a inhibitor of cysteine proteases in complex with human MDM2

Jimenez-Sandoval, P., Brieba, L.G.

(2018) Proteins 86: 802-812

Released	2017-10-18
Method	X-RAY DIFFRACTION 1.923 Å
Organisms	Entamoeba histolytica Homo sapiens
Macromolecule	De novo protein based on the inhibitor Amoebiasin-1 (protein) E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	CL, GOL, SO4

Explore in 3D

6CJZ \| pdb_00006cjz	Download File View File

Solution Structure of Amebosin

Mendoza, A., Flores-Solis, D., Del Rio Portilla, F., Brieba de Castro, L.

(2020) Biochim Biophys Acta Proteins Proteom 1868: 140512-140512

Released	2019-02-06
Method	SOLUTION NMR
Organisms	Entamoeba histolytica
Macromolecule	Amoebiasin-1 (protein)

Explore in 3D

6G63 \| pdb_00006g63	Download File View File

RNase E in complex with sRNA RrpA

Bandyra, K.B., Luisi, B.F.

(2018) Mol Cell 72: 275-285.e4

Released	2018-10-03
Method	X-RAY DIFFRACTION 3.95 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	Ribonuclease E (protein) RNA (5'-R(PAPAPAPAPAPAPAPAPAPAPAPAPUPUPUPUPUPUPUPUPUPUP*U)-3') (nucleic acid)
Unique Ligands	U, ZN

Explore in 3D

8B0J \| pdb_00008b0j	Download File View File

CryoEM structure of bacterial RNaseE.RapZ.GlmZ complex central to the control of cell envelope biogenesis

Islam, M.S., Hardwick, H.W., Chirgadze, D.Y., Luisi, B.F.

(2023) EMBO J 42: e112574-e112574

Released	2022-10-05
Method	ELECTRON MICROSCOPY 3.99 Å
Organisms	Escherichia coli K-12
Macromolecule	RNase adapter protein RapZ (protein) Ribonuclease E (protein) GlmZ small RNA (nucleic acid)

1 to 15 of 15 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1SLJ | pdb_00001slj

Solution structure of the S1 domain of RNase E from E. coli

1SN8 | pdb_00001sn8

Crystal structure of the S1 domain of RNase E from E. coli (Pb derivative)

3UEQ | pdb_00003ueq

Crystal structure of amylosucrase from Neisseria polysaccharea in complex with turanose

4FLO | pdb_00004flo

Crystal structure of Amylosucrase double mutant A289P-F290C from Neisseria polysaccharea

4FLQ | pdb_00004flq

Crystal structure of Amylosucrase double mutant A289P-F290I from Neisseria polysaccharea.

4FLR | pdb_00004flr

Crystal structure of Amylosucrase double mutant A289P-F290L from Neisseria polysaccharea

4FLS | pdb_00004fls

Crystal structure of Amylosucrase inactive double mutant F290K-E328Q from Neisseria polysaccharea in complex with sucrose.

5F6C | pdb_00005f6c

The structure of E. coli RNase E catalytically inactive mutant with RNA bound

5N6V | pdb_00005n6v

Crystal structure of Neisseria polysaccharea amylosucrase mutant derived from Neutral genetic Drift-based engineering

5N7J | pdb_00005n7j

Crystal structure of Neisseria polysaccharea amylosucrase mutant efficient for the synthesis of controlled size maltooligosaccharides

5OHG | pdb_00005ohg

enolase in complex with RNase E

5SWK | pdb_00005swk

Crystal structure of p53 epitope-scaffold based on a inhibitor of cysteine proteases in complex with human MDM2

6CJZ | pdb_00006cjz

Solution Structure of Amebosin

6G63 | pdb_00006g63

RNase E in complex with sRNA RrpA

8B0J | pdb_00008b0j

CryoEM structure of bacterial RNaseE.RapZ.GlmZ complex central to the control of cell envelope biogenesis

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1SLJ | pdb_00001slj

1SN8 | pdb_00001sn8

3UEQ | pdb_00003ueq

4FLO | pdb_00004flo

4FLQ | pdb_00004flq

4FLR | pdb_00004flr

4FLS | pdb_00004fls

5F6C | pdb_00005f6c

5N6V | pdb_00005n6v

5N7J | pdb_00005n7j

5OHG | pdb_00005ohg

5SWK | pdb_00005swk

6CJZ | pdb_00006cjz

6G63 | pdb_00006g63

8B0J | pdb_00008b0j