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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Bacillus licheniformis DSM 13 = ATCC 14580"

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This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Bacillus licheniformis DSM 13 = ATCC 14580 (23)
	Bacillus licheniformis (2)

Taxonomy

Bacteria (23)

Experimental Method

	X-RAY DIFFRACTION (21)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (23)

Refinement Resolution (Å)

	1.5 - 2.0 (8)
	2.0 - 2.5 (9)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	2010 - 2014 (14)
	2015 - 2019 (5)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (8)
	Transferases (6)
	Oxidoreductases (1)
	Ligases (1)

Symmetry Type

	Asymmetric (18)
	Cyclic (5)
	Tetrahedral (2)

SCOP Classification

	All beta proteins (6)
	Alpha and beta proteins (a/b) (4)

AllSelected

1 to 23 of 23 Structures

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2KTO \| pdb_00002kto	Download File View File

Spatial structure of Lch-beta peptide from two-component lantibiotic Lichenicidin VK21

Mineev, K.S., Shenkarev, Z.O., Ovchinnikova, T.V., Arseniev, A.S.

(2010) Biochemistry 49: 6462

Released	2010-07-21
Method	SOLUTION NMR
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	LCHB (protein)

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3LCZ \| pdb_00003lcz	Download File View File

B.licheniformis Anti-TRAP can assemble into two types of dodecameric particles with the same symmetry but inverted orientation of trimers

Shevtsov, M.B., Chen, Y., Gollnick, P., Antson, A.A.

(2010) J Struct Biol 170: 127-133

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Inhibitor of TRAP, regulated by T-BOX (Trp) sequence RtpA (protein)
Unique Ligands	ZN

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3LD0 \| pdb_00003ld0	Download File View File

Crystal structure of B.licheniformis Anti-TRAP protein, an antagonist of TRAP-RNA interactions

Shevtsov, M.B., Chen, Y., Isupov, M.N., Gollnick, P., Antson, A.A.

(2010) J Struct Biol 170: 127-133

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Inhibitor of TRAP, regulated by T-BOX (Trp) sequence RtpA (protein)
Unique Ligands	MG, ZN

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3LMA \| pdb_00003lma	Download File View File

Crystal structure of the stage V sporulation protein AD (SpoVAD) from Bacillus licheniformis. Northeast Structural Genomics Consortium Target BiR6.

Vorobiev, S., Ashok, S., Seetharaman, J., Belote, R.L., Ciccosanti, C., Patel, D.J., Janjua, H., Acton, T.B., Xiao, R., Everett, J.K., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2010-02-09
Method	X-RAY DIFFRACTION 1.993 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Stage V sporulation protein AD (SpoVAD) (protein)

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3LV4 \| pdb_00003lv4	Download File View File

Crystal structure of the glycoside hydrolase, family 43 YxiA protein from Bacillus licheniformis. Northeast Structural Genomics Consortium Target BiR14.

Vorobiev, S., Abashidze, M., Seetharaman, J., Belote, R.L., Ciccosanti, C., Sahdev, S., Xiao, R., Acton, T.B., Everett, J.K., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2010-03-09
Method	X-RAY DIFFRACTION 1.695 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Glycoside hydrolase YxiA (protein)
Unique Ligands	ACT, CA

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3OQH \| pdb_00003oqh	Download File View File

Crystal structure of B. licheniformis CDPS yvmC-BLIC

Bonnefond, L., Arai, T., Suzuki, T., Ishitani, R., Nureki, O.

(2011) Proc Natl Acad Sci U S A 108: 3912-3917

Released	2011-02-23
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Putative uncharacterized protein yvmC (protein)
Unique Ligands	GOL

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3OQI \| pdb_00003oqi	Download File View File

Crystal structure of B. licheniformis CDPS yvmC-BLIC in complex with CHES

Bonnefond, L., Arai, T., Suzuki, T., Ishitani, R., Nureki, O.

(2011) Proc Natl Acad Sci U S A 108: 3912-3917

Released	2011-02-23
Method	X-RAY DIFFRACTION 1.701 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Putative uncharacterized protein yvmC (protein)
Unique Ligands	GOL, NHE

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3OQJ \| pdb_00003oqj	Download File View File

Crystal structure of B. licheniformis CDPS yvmC-BLIC in complex with CAPSO

Bonnefond, L., Arai, T., Suzuki, T., Ishitani, R., Nureki, O.

(2011) Proc Natl Acad Sci U S A 108: 3912-3917

Released	2011-02-23
Method	X-RAY DIFFRACTION 2.399 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Putative uncharacterized protein yvmC (protein)
Unique Ligands	3CX

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3RJL \| pdb_00003rjl	Download File View File

Crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from Bacillus licheniformis (Target NYSGRC-000337)

Patskovsky, Y., Toro, R., Foti, R., Seidel, R.D., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2011-04-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	1-pyrroline-5-carboxylate dehydrogenase (protein)
Unique Ligands	ACT, CD

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3S7T \| pdb_00003s7t	Download File View File

Crystal structure of SeMet B. licheniformis CDPS YvmC-Blic

Bonnefond, L., Ishitani, R., Nureki, O.

(2011) Proc Natl Acad Sci U S A 108: 3912-3917

Released	2011-06-22
Method	X-RAY DIFFRACTION 2.808 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Putative uncharacterized protein yvmC (protein)

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3VOT \| pdb_00003vot	Download File View File

Crystal structure of L-amino acid ligase from Bacillus licheniformis

Suzuki, M., Takahashi, Y., Noguchi, A., Arai, T., Yagasaki, M., Kino, K., Saito, J.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1535-1540

Released	2012-11-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	L-amino acid ligase, BL00235 (protein)
Unique Ligands	ADP, CA, CL, PG4

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4OTT \| pdb_00004ott	Download File View File

Crystal structure of the gamma-glutamyltranspeptidase from Bacillus licheniformis.

Merlino, A.

(2014) Biochim Biophys Acta 1844: 1523-1529

Released	2014-07-23
Method	X-RAY DIFFRACTION 2.98 Å
Organisms	Bacillus licheniformis Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Gamma glutamyl transpeptidase (protein) Gamma-glutamyltranspeptidase (protein)
Unique Ligands	MG

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4OTU \| pdb_00004otu	Download File View File

Crystal structure of the gamma-glutamyltranspeptidase from Bacillus licheniformis in complex with L-Glutamate

Merlino, A.

(2014) Biochim Biophys Acta 1844: 1523-1529

Released	2014-07-23
Method	X-RAY DIFFRACTION 3.022 Å
Organisms	Bacillus licheniformis Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Gamma glutamyl transpeptidase (protein) Gamma-glutamyltranspeptidase (protein)
Unique Ligands	GLU, MG

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4RK9 \| pdb_00004rk9	Download File View File

CRYSTAL STRUCTURE OF SUGAR TRANSPORTER BL01359 FROM Bacillus licheniformis, TARGET EFI-510856, IN COMPLEX WITH STACHYOSE

Patskovsky, Y., Toro, R., Bhosle, R., Al Obaidi, N., Chamala, S., Attonito, J.D., Scott Glenn, A., Chowdhury, S., Lafleur, J., Siedel, R.D., Hillerich, B., Love, J., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2014-11-05
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Carbohydrate ABC transporter substrate-binding protein MsmE (protein)
Unique branched monosaccharides	FRU, GLA, GLC

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5BRP \| pdb_00005brp	Download File View File

Crystal structure of Bacillus licheniformis trehalose-6-phosphate hydrolase (TreA), mutant R201Q, in complex with PNG

Hsiao, C.-D., Lin, M.-G.

(2016) Acta Crystallogr D Struct Biol 72: 59-70

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Glycoside Hydrolase Family 13 (protein)
Unique Ligands	MG, PNG

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5BRQ \| pdb_00005brq	Download File View File

Crystal structure of Bacillus licheniformis trehalose-6-phosphate hydrolase (TreA)

Hsiao, C.-D., Lin, M.-G.

(2016) Acta Crystallogr D Struct Biol 72: 59-70

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.003 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Glycoside Hydrolase Family 13 (protein)
Unique Ligands	MG

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6B7K \| pdb_00006b7k	Download File View File

GH43 Endo-Arabinanase from Bacillus licheniformis

Farro, E.G.S., Nascimento, A.S.

(2018) Int J Biol Macromol 117: 7-16

Released	2018-06-13
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Endo-alpha-(1->5)-L-arabinanase (protein)
Unique Ligands	CA

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6MS2 \| pdb_00006ms2	Download File View File

Crystal structure of the GH43 BlXynB protein from Bacillus licheniformis

Zanphorlin, L.M., Morais, M.A.B., Diogo, J.A., Murakami, M.T.

(2019) Biotechnol Bioeng 116: 734-744

Released	2019-04-17
Method	X-RAY DIFFRACTION 2.494 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Glycoside Hydrolase Family 43 (protein)
Unique Ligands	CA

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6MS3 \| pdb_00006ms3	Download File View File

Crystal structure of the GH43 protein BlXynB mutant (K247S) from Bacillus licheniformis

Zanphorlin, L.M., Morais, M.A.B., Diogo, J.A., Murakami, M.T.

(2019) Biotechnol Bioeng 116: 734-744

Released	2019-04-17
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Glycoside Hydrolase Family 43 (protein)
Unique Ligands	CA, GOL, IMD, SO4

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6TWE \| pdb_00006twe	Download File View File

Cu(I) NMR solution structure of the chitin-active lytic polysaccharide monooxygenase BlLPMO10A

Courtade, G., Wimmer, R., Aachmann, F.L.

(2020) Proc Natl Acad Sci U S A 117: 19178-19189

Released	2020-07-29
Method	SOLUTION NMR
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Putative chitin binding protein (protein)
Unique Ligands	CU1

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8U49 \| pdb_00008u49	Download File View File

The Apo Crystal Structure of BlCel9A from Glycoside Hydrolase Family 9

Araujo, E.A., Polikarpov, I.

(2024) Carbohydr Polym 329: 121739-121739

Released	2024-02-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Endoglucanase (protein)
Unique Ligands	CA, CL, EDO, GOL, NA, TRS

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8U4A \| pdb_00008u4a	Download File View File

Crystal Structure of BlCel9A from Glycoside Hydrolase Family 9 in Complex with Cellotriose

Araujo, E.A., Polikarpov, I.

(2024) Carbohydr Polym 329: 121739-121739

Released	2024-02-14
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Endoglucanase (protein)
Unique Ligands	CA, CL, NA, TRS
Unique branched monosaccharides	BGC

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8U4F \| pdb_00008u4f	Download File View File

Crystal Structure of BlCel9A from Glycoside Hydrolase Family 9 in Complex with Cellohexaose

Araujo, E.A., Polikarpov, I.

(2024) Carbohydr Polym 329: 121739-121739

Released	2024-02-14
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Endoglucanase (protein)
Unique Ligands	BGC, CA, CL, NA, PG4, TRS
Unique branched monosaccharides	BGC

1 to 23 of 23 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2KTO | pdb_00002kto

3LCZ | pdb_00003lcz

3LD0 | pdb_00003ld0

3LMA | pdb_00003lma

3LV4 | pdb_00003lv4

3OQH | pdb_00003oqh

3OQI | pdb_00003oqi

3OQJ | pdb_00003oqj

3RJL | pdb_00003rjl

3S7T | pdb_00003s7t

3VOT | pdb_00003vot

4OTT | pdb_00004ott

4OTU | pdb_00004otu

4RK9 | pdb_00004rk9

5BRP | pdb_00005brp

5BRQ | pdb_00005brq

6B7K | pdb_00006b7k

6MS2 | pdb_00006ms2

6MS3 | pdb_00006ms3

6TWE | pdb_00006twe

8U49 | pdb_00008u49

8U4A | pdb_00008u4a

8U4F | pdb_00008u4f