RCSB PDB: Search

3QED \| pdb_00003qed	Download File View File

The structure and function of an arabinan-specific alpha-1,2-arabinofuranosidase identified from screening the activities of bacterial GH43 glycoside hydrolases

Cartmell, A., Mckee, L.S., Pena, M., Larsbrink, J., Brumer, H., Lewis, R.J., Viks-Nielsen, A., Gilbert, H.J., Marles-Wright, J.

(2011) J Biological Chem 286: 15483-15495

Released	2011-02-16
Method	X-RAY DIFFRACTION 2.99 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Beta-xylosidase/alpha-L-arabinfuranosidase, gly43N (protein)
Unique Ligands	CA, SO4, TAM

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3QEE \| pdb_00003qee	Download File View File

The structure and function of an arabinan-specific alpha-1,2-arabinofuranosidase identified from screening the activities of bacterial GH43 glycoside hydrolases

Cartmell, A., Mckee, L.S., Pena, M., Larsbrink, J., Brumer, H., Lewis, R.J., Viks-Nielsen, A., Gilbert, H.J., Marles-Wright, J.

(2011) J Biological Chem 286: 15483-15495

Released	2011-02-16
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Beta-xylosidase/alpha-L-arabinfuranosidase, gly43N (protein)
Unique Ligands	ACT, CA

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3QEF \| pdb_00003qef	Download File View File

The structure and function of an arabinan-specific alpha-1,2-arabinofuranosidase identified from screening the activities of bacterial GH43 glycoside hydrolases

Cartmell, A., Mckee, L.S., Pena, M., Larsbrink, J., Brumer, H., Lewis, R.J., Viks-Nielsen, A., Gilbert, H.J., Marles-Wright, J.

(2011) J Biological Chem 286: 15483-15495

Released	2011-02-16
Method	X-RAY DIFFRACTION 1.789 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Beta-xylosidase/alpha-L-arabinfuranosidase, gly43N (protein)
Unique Ligands	CA, EDO
Unique branched monosaccharides	AHR

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3V3W \| pdb_00003v3w	Download File View File

Crystal structure of an enolase from the soil bacterium Cellvibrio japonicus (TARGET EFI-502161) with bound MG and glycerol

Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Sojitra, S., Seidel, R., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-01-11
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Starvation sensing protein rspA (protein)
Unique Ligands	CL, GOL, MG, NHE

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3V4B \| pdb_00003v4b	Download File View File

Crystal structure of an enolase from the soil bacterium Cellvibrio japonicus (TARGET EFI-502161) with bound MG and L-tartrate

Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Sojitra, S., Seidel, R.D., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Al Obaidi, N., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-12-28
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Starvation sensing protein rspA (protein)
Unique Ligands	CL, MG, TLA

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4CD4 \| pdb_00004cd4	Download File View File

The structure of GH26 beta-mannanase CjMan26C from Cellvibrio japonicus in complex with ManIFG

Williams, R.J., Iglesias-Fernandez, J., Stepper, J., Jackson, A., Thompson, A.J., Lowe, E.C., White, J.M., Gilbert, H.J., Rovira, C., Davies, G.J., Williams, S.J.

(2014) Angew Chem Int Ed Engl 53: 1087

Released	2014-04-02
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	ENDO-1,4-BETA MANNANASE, PUTATIVE, MAN26C (protein)
Unique Ligands	BMA, IFM, NA

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4CD5 \| pdb_00004cd5	Download File View File

The structure of GH26 beta-mannanase CjMan26C from Cellvibrio japonicus in complex with ManMIm

Williams, R.J., Iglesias-Fernandez, J., Stepper, J., Jackson, A., Thompson, A.J., Lowe, E.C., White, J.M., Gilbert, H.J., Rovira, C., Davies, G.J., Williams, S.J.

(2014) Angew Chem Int Ed Engl 53: 1087

Released	2014-04-02
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	ENDO-1,4-BETA MANNANASE, PUTATIVE, MAN26C (protein)
Unique Ligands	BMA, MVL, NA

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4D1I \| pdb_00004d1i	Download File View File

The structure of the GH35 beta-galactosidase Bgl35A from Cellvibrio japonicus

Larsbrink, J., Thompson, A.J., Lundqvist, M., Gardner, J.G., Davies, G.J., Brumer, H.

(2014) Mol Microbiol 94: 418

Released	2014-05-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	BETA-GALACTOSIDASE, PUTATIVE, BGL35A (protein)
Unique Ligands	ACT, NA

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4D1J \| pdb_00004d1j	Download File View File

The structure of the GH35 beta-galactosidase Bgl35A from Cellvibrio japonicas in complex with 1-Deoxygalactonojirimycin

Larsbrink, J., Thompson, A.J., Lundqvist, M., Gardner, J.G., Davies, G.J., Brumer, H.

(2014) Mol Microbiol 94: 418

Released	2014-05-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	BETA-GALACTOSIDASE, PUTATIVE, BGL35A (protein)
Unique Ligands	ACT, DGJ, NA

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5FKQ \| pdb_00005fkq	Download File View File

Unraveling the first step of xyloglucan degradation by the soil saprophyte Cellvibrio japonicus through the functional and structural characterization of a potent GH74 endo-xyloglucanase

Attia, M., Stepper, J., Davies, G.J., Brumer, H.

(2016) FEBS J 283: 1701

Released	2015-11-04
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	ENDO-1,4-BETA-GLUCANASE/XYLOGLUCANASE, PUTATIVE, GLY74A (protein)
Unique Ligands	BR, EDO, K

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5FKR \| pdb_00005fkr	Download File View File

Unraveling the first step of xyloglucan degradation by the soil saprophyte Cellvibrio japonicus through the functional and structural characterization of a potent GH74 endo-xyloglucanase

Attia, M., Stepper, J., Davies, G.J., Brumer, H.

(2016) FEBS J 283: 1701

Released	2015-11-25
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	ENDO-1,4-BETA-GLUCANASE/XYLOGLUCANASE, PUTATIVE, GLY74A (protein)
Unique Ligands	BR, EDO, K

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5FKS \| pdb_00005fks	Download File View File

Unraveling the first step of xyloglucan degradation by the soil saprophyte Cellvibrio japonicus through the functional and structural characterization of a potent GH74 endo-xyloglucanase

Attia, M., Stepper, J., Davies, G.J., Brumer, H.

(2016) FEBS J 283: 1701

Released	2015-11-25
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	ENDO-1,4-BETA-GLUCANASE/XYLOGLUCANASE, PUTATIVE, GLY74A (protein)
Unique Ligands	BR, EDO, K
Unique branched monosaccharides	BGC, GAL, XYS

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5FKT \| pdb_00005fkt	Download File View File

Unraveling the first step of xyloglucan degradation by the soil saprophyte Cellvibrio japonicus through the functional and structural characterization of a potent GH74 endo-xyloglucanase

Attia, M., Stepper, J., Davies, G.J., Brumer, H.

(2016) FEBS J 283: 1701

Released	2015-11-04
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	ENDO-1,4-BETA-GLUCANASE/XYLOGLUCANASE, GLY74A (protein)
Unique Ligands	BR, EDO, K

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5I23 \| pdb_00005i23	Download File View File

Crystal Structure of Agd31B, alpha-transglucosylase in Glycoside Hydrolase Family 31, in complex with Cyclophellitol Aziridine probe CF022

Wu, L., Davies, G.J.

(2016) ACS Cent Sci 2: 351-358

Released	2016-05-04
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Oligosaccharide 4-alpha-D-glucosyltransferase (protein)
Unique Ligands	66V, EDO, PG4, SO4

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5I24 \| pdb_00005i24	Download File View File

Crystal Structure of Agd31B, alpha-transglucosylase in Glycoside Hydrolase Family 31, in complex with Cyclophellitol Aziridine probe CF021

Wu, L., Davies, G.J.

(2016) ACS Cent Sci 2: 351-358

Released	2016-05-04
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Oligosaccharide 4-alpha-D-glucosyltransferase (protein)
Unique Ligands	66U, EDO, PG4, SO4, TRS

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5JAW \| pdb_00005jaw	Download File View File

Structure of a beta galactosidase with inhibitor

Offen, W., Davies, G.

(2017) Chem Commun (Camb) 53: 12528-12531

Released	2017-05-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Beta-galactosidase, putative, bgl35A (protein)
Unique Ligands	ACT, NA, UUU

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5NPE \| pdb_00005npe	Download File View File

Crystal Structure of cjAgd31B (alpha-transglucosylase from Glycoside Hydrolase Family 31) in complex with beta Cyclophellitol Aziridine probe KY358

Wu, L., Davies, G.J.

(2017) ACS Cent Sci 3: 784-793

Released	2017-08-09
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Oligosaccharide 4-alpha-D-glucosyltransferase (protein)
Unique Ligands	948, EDO, OXL, PG4, SO4

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5OYC \| pdb_00005oyc	Download File View File

GH5 endo-xyloglucanase from Cellvibrio japonicus

Attia, M., Nelson, C.E., Offen, W.A., Jain, N., Gardner, J.G., Davies, G.J., Brumer, H.

(2018) Biotechnol Biofuels 11: 45-45

Released	2018-02-07
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Cellulase, putative, cel5D (protein)
Unique Ligands	2PE, CL, GOL, PG4, SO4

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5OYD \| pdb_00005oyd	Download File View File

GH5 endo-xyloglucanase from Cellvibrio japonicus

Attia, M., Nelson, C.E., Offen, W.A., Jain, N., Gardner, J.G., Davies, G.J., Brumer, H.

(2018) Biotechnol Biofuels 11: 45-45

Released	2018-02-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Cellulase, putative, cel5D (protein)
Unique Ligands	CL, GOL, SO4
Unique branched monosaccharides	BGC, NBG, XYS

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5OYE \| pdb_00005oye	Download File View File

GH5 endo-xyloglucanase from Cellvibrio japonicus

Attia, M., Nelson, C.E., Offen, W.A., Jain, N., Gardner, J.G., Davies, G.J., Brumer, H.

(2018) Biotechnol Biofuels 11: 45-45

Released	2018-02-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Cellulase, putative, cel5D (protein)
Unique Ligands	CL, SO4
Unique branched monosaccharides	BGC, GAL, XYS

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6HA9 \| pdb_00006ha9	Download File View File

Structure of an endo-Xyloglucanase from Cellvibrio japonicus complexed with XXXG(2F)-beta-DNP

Offen, W.A., Davies, G.J.

(2018) Org Biomol Chem 16: 8732-8741

Released	2018-10-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Cellulase, putative, cel5D (protein)
Unique Ligands	1PE, GOL, SO4
Unique branched monosaccharides	BGC, NFG, XYS

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6HAA \| pdb_00006haa	Download File View File

Structure of a covalent complex of endo-Xyloglucanase from Cellvibrio japonicus after reacting with XXXG(2F)-beta-DNP

Offen, W., Davies, G.J.

(2018) Org Biomol Chem 16: 8732-8741

Released	2018-10-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Cellulase, putative, cel5D (protein)
Unique Ligands	1PE, GOL, MES, PGE, SO4
Unique branched monosaccharides	BGC, G2F, XYS

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6TBF \| pdb_00006tbf	Download File View File

Structure of a beta galactosidase with inhibitor

Offen, W., Davies, G.

(2020) Molecules 25:

Released	2020-08-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Beta-galactosidase, putative, bgl35A (protein)
Unique Ligands	ACT, N0T, NA

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6TBG \| pdb_00006tbg	Download File View File

Structure of a beta galactosidase with inhibitor

Offen, W., Davies, G.

(2020) Molecules 25:

Released	2020-08-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Beta-galactosidase, putative, bgl35A (protein)
Unique Ligands	ACT, N0N, NA

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6TBH \| pdb_00006tbh	Download File View File

Structure of a beta galactosidase with inhibitor

Offen, W., Davies, G.

(2020) Molecules 25:

Released	2020-08-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Beta-galactosidase, putative, bgl35A (protein)
Unique Ligands	ACT, N0K, NA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3QED | pdb_00003qed

3QEE | pdb_00003qee

3QEF | pdb_00003qef

3V3W | pdb_00003v3w

3V4B | pdb_00003v4b

4CD4 | pdb_00004cd4

4CD5 | pdb_00004cd5

4D1I | pdb_00004d1i

4D1J | pdb_00004d1j

5FKQ | pdb_00005fkq

5FKR | pdb_00005fkr

5FKS | pdb_00005fks

5FKT | pdb_00005fkt

5I23 | pdb_00005i23

5I24 | pdb_00005i24

5JAW | pdb_00005jaw

5NPE | pdb_00005npe

5OYC | pdb_00005oyc

5OYD | pdb_00005oyd

5OYE | pdb_00005oye

6HA9 | pdb_00006ha9

6HAA | pdb_00006haa

6TBF | pdb_00006tbf

6TBG | pdb_00006tbg

6TBH | pdb_00006tbh