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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Chikungunya virus strain Senegal 37997"

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This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Chikungunya virus strain Senegal 37997 (8)
	Homo sapiens (3)
	Mus musculus (1)

Taxonomy

	Riboviria (8)
	Eukaryota (4)

Experimental Method

	ELECTRON MICROSCOPY (7)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

Protein (8)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	3.0 - 3.5 (3)
	4.0 - 4.5 (2)
	> 4.5 (2)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (3)
	2020 - 2024 (4)

Enzyme Classification Name

Hydrolases (1)

Membrane Protein Annotation

	OPM (5)
	MemProtMD (4)
	PDBTM (4)

Symmetry Type

	Asymmetric (4)
	Icosahedral (4)

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1 to 8 of 8 Structures

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3J2W \| pdb_00003j2w	Download File View File

Electron cryo-microscopy of Chikungunya virus

Sun, S., Xiang, Y., Rossmann, M.G.

(2013) Elife 2: e00435-e00435

Released	2013-04-24
Method	ELECTRON MICROSCOPY 5 Å
Organisms	Chikungunya virus strain Senegal 37997
Macromolecule	Unique protein chains: 6

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5VU2 \| pdb_00005vu2	Download File View File

Electron cryo-microscopy of "immature" Chikungunya VLP

Rossmann, M.G., Yap, M.L.

(2017) Proc Natl Acad Sci U S A 114: 13703-13707

Released	2017-12-06
Method	ELECTRON MICROSCOPY 6.8 Å
Organisms	Chikungunya virus strain Senegal 37997
Macromolecule	E1 envelope glycoprotein (protein) E2 envelope glycoprotein (protein) E3 envelope glycoprotein (protein) capsid protein (protein)

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6NK5 \| pdb_00006nk5	Download File View File

Electron Cryo-Microscopy Of Chikungunya VLP

Basore, K., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID)

(2019) Cell 177: 1725

Released	2019-05-22
Method	ELECTRON MICROSCOPY 4.16 Å
Organisms	Chikungunya virus strain Senegal 37997
Macromolecule	Capsid protein (protein) E1 glycoprotein (protein) E2 glycoprotein (protein)
Unique Ligands	NAG

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6NK6 \| pdb_00006nk6	Download File View File

Electron Cryo-Microscopy Of Chikungunya VLP in complex with mouse Mxra8 receptor

Basore, K., Kim, A.S., Nelson, C.A., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID)

(2019) Cell 177: 1725

Released	2019-05-22
Method	ELECTRON MICROSCOPY 4.06 Å
Organisms	Chikungunya virus strain Senegal 37997 Mus musculus
Macromolecule	Capsid protein (protein) E1 glycoprotein (protein) E2 glycoprotein (protein) Matrix remodeling-associated protein 8 (protein)
Unique Ligands	NAG

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6W0T \| pdb_00006w0t	Download File View File

Co-crystal structures of CHIKV nsP3 macrodomain with pyrimidone fragments

Wu, M., Zhang, S.

(2021) PLoS One 16: e0245013-e0245013

Released	2021-01-13
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Chikungunya virus strain Senegal 37997
Macromolecule	Non-structural protein 3 (protein)
Unique Ligands	S6Y

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8DWW \| pdb_00008dww	Download File View File

Chikungunya VLP in complex with neutralizing Fab 506.A08 (asymmetric unit)

Adams, L.J., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID)

(2023) Sci Transl Med 15: eade8273-eade8273

Released	2023-05-31
Method	ELECTRON MICROSCOPY 3.13 Å
Organisms	Chikungunya virus strain Senegal 37997 Homo sapiens
Macromolecule	506.A08 heavy chain (protein) 506.A08 light chain (protein) Capsid protein (protein) E1 glycoprotein (protein) E2 glycoprotein (protein)
Unique Ligands	NAG

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8DWX \| pdb_00008dwx	Download File View File

Chikungunya VLP in complex with neutralizing Fab 506.C01 (asymmetric unit)

Adams, L.J., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID)

(2023) Sci Transl Med 15: eade8273-eade8273

Released	2023-05-31
Method	ELECTRON MICROSCOPY 3.27 Å
Organisms	Chikungunya virus strain Senegal 37997 Homo sapiens
Macromolecule	506.C01 heavy chain (protein) 506.C01 light chain (protein) Capsid protein (protein) E1 glycoprotein (protein) E2 glycoprotein (protein)
Unique Ligands	NAG

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8DWY \| pdb_00008dwy	Download File View File

Chikungunya VLP in complex with neutralizing Fab CHK-265 (asymmetric unit)

Adams, L.J., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID)

(2023) Sci Transl Med 15: eade8273-eade8273

Released	2023-05-31
Method	ELECTRON MICROSCOPY 3.18 Å
Organisms	Chikungunya virus strain Senegal 37997 Homo sapiens
Macromolecule	CHK-265 heavy chain (protein) CHK-265 light chain (protein) Capsid protein (protein) E1 glycoprotein (protein) E2 glycoprotein (protein)
Unique Ligands	NAG

1 to 8 of 8 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3J2W | pdb_00003j2w

Electron cryo-microscopy of Chikungunya virus

5VU2 | pdb_00005vu2

Electron cryo-microscopy of "immature" Chikungunya VLP

6NK5 | pdb_00006nk5

Electron Cryo-Microscopy Of Chikungunya VLP

6NK6 | pdb_00006nk6

Electron Cryo-Microscopy Of Chikungunya VLP in complex with mouse Mxra8 receptor

6W0T | pdb_00006w0t

Co-crystal structures of CHIKV nsP3 macrodomain with pyrimidone fragments

8DWW | pdb_00008dww

Chikungunya VLP in complex with neutralizing Fab 506.A08 (asymmetric unit)

8DWX | pdb_00008dwx

Chikungunya VLP in complex with neutralizing Fab 506.C01 (asymmetric unit)

8DWY | pdb_00008dwy

Chikungunya VLP in complex with neutralizing Fab CHK-265 (asymmetric unit)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

3J2W | pdb_00003j2w

5VU2 | pdb_00005vu2

6NK5 | pdb_00006nk5

6NK6 | pdb_00006nk6

6W0T | pdb_00006w0t

8DWW | pdb_00008dww

8DWX | pdb_00008dwx

8DWY | pdb_00008dwy