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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Influenza A virus (A/Puerto Rico/8/1934(H1N1))"

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Search Summary

This query matches 53 Structures.

Refinements

Structure Determination Methodology

experimental (53)

Scientific Name of Source Organism

	Influenza A virus (A/Puerto Rico/8/1934(H1N1)) (52)
	synthetic construct (7)
	Kitasatospora aureofaciens (5)
	Homo sapiens (4)
	Mus musculus (2)
	Bos taurus (1)
	Influenza A virus (strain A/Puerto Rico/8/1934 H1N1) (1)

Taxonomy

	Riboviria (52)
	Eukaryota (7)
	other sequences (7)
	Bacteria (5)
	Riboviria (RNA viruses and viroids) (1)

Experimental Method

	X-RAY DIFFRACTION (48)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (53)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (11)
	2.0 - 2.5 (18)
	2.5 - 3.0 (9)
	3.0 - 3.5 (6)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)
	> 4.5 (2)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (4)
	2010 - 2014 (13)
	2015 - 2019 (22)
	2020 - 2024 (11)

Enzyme Classification Name

	Hydrolases (11)
	Transferases (6)
	Oxidoreductases (5)
	Ligases (2)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (25)
	Cyclic (20)
	Dihedral (4)
	Helical (3)

SCOP Classification

	Coiled coil proteins (5)
	All beta proteins (4)
	Artifacts (10)
	Alpha and beta proteins (a/b) (9)
	Alpha and beta proteins (a+b) (3)
	Peptides (3)
	All alpha proteins (2)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 53 Structures

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1RU7 \| pdb_00001ru7	Download File View File

1934 Human H1 Hemagglutinin

Skehel, J.J., Gamblin, S.J., Haire, L.F., Russell, R.J., Stevens, D.J., Xiao, B., Ha, Y., Vasisht, N., Steinhauer, D.A., Daniels, R.S.

(2004) Science 303: 1838-1842

Released	2004-03-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	hemagglutinin (protein)

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1RVX \| pdb_00001rvx	Download File View File

1934 H1 Hemagglutinin in complex with LSTA

Gamblin, S.J., Haire, L.F., Russell, R.J., Stevens, D.J., Xiao, B., Ha, Y., Vasisht, N., Steinhauer, D.A., Daniels, R.S., Elliot, A., Wiley, D.C., Skehel, J.J.

(2004) Science 303: 1838-1842

Released	2004-03-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Hemagglutinin (protein) hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

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1RVZ \| pdb_00001rvz	Download File View File

1934 H1 Hemagglutinin in complex with LSTC

Gamblin, S.J., Haire, L.F., Russell, R.J., Stevens, D.J., Xiao, B., Ha, Y., Vasisht, N., Steinhauer, D.A., Daniels, R.S., Elliot, A., Wiley, D.C., Skehel, J.J.

(2004) Science 303: 1838-1842

Released	2004-03-30
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

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2HN8 \| pdb_00002hn8	Download File View File

Structural characterization and oligomerization of PB1-F2, a pro-apoptotic influenza A virus protein

Bruns, K., Studtrucker, N., Sharma, A., Fossen, T., Mitzner, D., Eissmann, A., Tessmer, U., Roder, R., Henklein, P., Wray, V., Schubert, U.

(2007) J Biological Chem 282: 353-363

Released	2006-11-07
Method	SOLUTION NMR
Organisms	Influenza A virus (strain A/Puerto Rico/8/1934 H1N1)
Macromolecule	Protein PB1-F2 (protein)

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2YMN \| pdb_00002ymn	Download File View File

Organization of the Influenza Virus Replication Machinery

Moeller, A., Kirchdoerfer, R.N., Potter, C.S., Carragher, B., Wilson, I.A.

(2012) Science 338: 1631

Released	2012-12-05
Method	ELECTRON MICROSCOPY 20 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	NUCLEOPROTEIN (protein)

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2ZNL \| pdb_00002znl	Download File View File

Crystal structure of PA-PB1 complex form influenza virus RNA polymerase

Obayashi, E., Yoshida, H., Kawai, F., Shibayama, N., Kawaguchi, A., Nagata, K., Tame, J.R.H., Park, S.-Y.

(2008) Nature 454: 1127-1131

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein) RNA-directed RNA polymerase catalytic subunit (protein)

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2ZTT \| pdb_00002ztt	Download File View File

Crystal Structure of RNA polymerase PB1-PB2 subunits from Influenza A Virus

Sugiyama, K., Obayashi, E., Park, S.-Y.

(2009) EMBO J 28: 1803-1811

Released	2009-06-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase basic protein 2 (protein) RNA-directed RNA polymerase catalytic subunit (protein)

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3A1G \| pdb_00003a1g	Download File View File

High-Resolution Crystal Structure of RNA polymerase PB1-PB2 subunits from Influenza A Virus

Sugiyama, K., Park, S.-Y., Obayashi, E.

(2009) EMBO J 28: 1803-1811

Released	2009-06-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase basic protein 2 (protein) RNA-directed RNA polymerase catalytic subunit (protein)

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3L4Q \| pdb_00003l4q	Download File View File

Structural insights into phosphoinositide 3-kinase activation by the influenza A virus NS1 protein

Hale, B.G., Kerry, P.S., Jackson, D., Precious, B.L., Gray, A., Killip, M.J., Randall, R.E., Russell, R.J.

(2010) Proc Natl Acad Sci U S A 107: 1954-1959

Released	2010-02-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Non-structural protein 1 (protein) Phosphatidylinositol 3-kinase regulatory subunit beta (protein)
Unique Ligands	GOL

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3RVC \| pdb_00003rvc	Download File View File

Effector domain of NS1 from influenza A/PR/8/34 containing a W187A mutation

Kerry, P.S., Long, E., Taylor, M.A., Russell, R.J.M.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 858-861

Released	2011-08-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Non-structural protein 1 (protein)

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3VDX \| pdb_00003vdx	Download File View File

Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains

Lai, Y.-T., Cascio, D., Yeates, T.O.

(2012) Science 336: 1129-1129

Released	2012-06-20
Method	X-RAY DIFFRACTION 3.002 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1)) Kitasatospora aureofaciens
Macromolecule	Designed 16nm tetrahedral protein cage containing Non-haem bromoperoxidase BPO-A2 and Matrix protein 1 (protein)

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3WI0 \| pdb_00003wi0	Download File View File

P453H/I471T mutant of PB2 middle domain from influenza virus A/Puerto Rico/8/34(H1N1)

Tsurumura, T., Yoshida, T., Tsuge, H.

(2013) PLoS One 8: e82020-e82020

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.998 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase basic protein 2 (protein)

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3WI1 \| pdb_00003wi1	Download File View File

P453H/I471T mutant of PB2 middle domain from influenza virus A/Puerto Rico/8/34(H1N1) with m7GTP

Tsurumura, T., Yoshida, T., Tsuge, H.

(2013) PLoS One 8: e82020-e82020

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.931 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase basic protein 2 (protein)
Unique Ligands	MGT

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4D9J \| pdb_00004d9j	Download File View File

Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains

Lai, Y.-T., Cascio, D., Yeates, T.O.

(2012) Science 336: 1129-1129

Released	2012-06-20
Method	X-RAY DIFFRACTION 3.92 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1)) Kitasatospora aureofaciens
Macromolecule	Designed 16nm tetrahedral protein cage containing Non-haem bromoperoxidase BPO-A2 and Matrix protein 1 (protein)

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4ENF \| pdb_00004enf	Download File View File

Crystal structure of the cap-binding domain of polymerase basic protein 2 from influenza virus A/Puerto Rico/8/34(h1n1)

Meng, G., Liu, Y., Zheng, X.

(2013) J Biological Chem 288: 11013-11023

Released	2013-03-06
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase basic protein 2 (protein)
Unique Ligands	BU1, NO3

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4IQ4 \| pdb_00004iq4	Download File View File

Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains, triple mutant, P21212 form

Lai, Y.-T., Sawaya, M.R., Yeates, T.O.

(2013) J Am Chem Soc 135: 7738-7743

Released	2013-07-24
Method	X-RAY DIFFRACTION 3.495 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1)) Kitasatospora aureofaciens
Macromolecule	Non-haem bromoperoxidase BPO-A2, Matrix protein 1 (protein)

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4ITV \| pdb_00004itv	Download File View File

Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains, triple mutant, P212121 form

Lai, Y.-T., Sawaya, M.R., Yeates, T.O.

(2013) J Am Chem Soc 135: 7738-7743

Released	2013-07-24
Method	X-RAY DIFFRACTION 3.598 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1)) Kitasatospora aureofaciens
Macromolecule	Non-haem bromoperoxidase BPO-A2, Matrix protein 1 (protein)

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4IVJ \| pdb_00004ivj	Download File View File

Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains, triple mutant, I222 form

Lai, Y.-T., Sawaya, M.R., Yeates, T.O.

(2013) J Am Chem Soc 135: 7738-7743

Released	2013-07-24
Method	X-RAY DIFFRACTION 7.351 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1)) Kitasatospora aureofaciens
Macromolecule	Non-haem bromoperoxidase BPO-A2, Matrix protein 1 (protein)

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4J2R \| pdb_00004j2r	Download File View File

Middle domain of influenza A virus RNA-dependent polymerase PB2

Qiu, H., Tsurumura, T., Tsumori, Y., Hatakeyama, D., Kuzuhara, T., Tsuge, H.

(2014) Acta Crystallogr Sect F Struct Biol Cryst Commun 70: 72-75

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase basic protein 2 (protein)

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4N8C \| pdb_00004n8c	Download File View File

Three-dimensional structure of the extracellular domain of Matrix protein 2 of influenza A virus

Cho, K.J., Seok, J.H., Kim, S., Roose, K., Schepens, B., Fiers, W., Saelens, X., Kim, K.H.

(2015) J Virol 89: 3700-3711

Released	2014-10-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1)) Mus musculus
Macromolecule	Extracellular domain of influenza Matrix protein 2 (protein) Heavy chain of monoclonal antibody (protein) Light chain of monoclonal antibody (protein)

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4U6O \| pdb_00004u6o	Download File View File

STRUCTURE OF THE CAP-BINDING DOMAIN OF INFLUENZA VIRUS POLYMERASE SUBUNIT PB2

Fukushima, K., Takimoto-Kamimura, M.

To be published

Released	2015-10-07
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase basic protein 2 (protein)
Unique Ligands	PO4

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4YYL \| pdb_00004yyl	Download File View File

Phenolic acid derivative bound to influenza strain H1N1 polymerase subunit PA endonuclease

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.

(2015) Bioorg Med Chem 23: 5466-5475

Released	2015-04-29
Method	X-RAY DIFFRACTION 1.905 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	4KN, MN, SO4

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4ZDU \| pdb_00004zdu	Download File View File

Crystal structure of importin-alpha bound to a non-classical nuclear localization signal of the influenza A virus nucleoprotein

Nakada, R., Hirano, H., Matsuura, Y.

(2015) Sci Rep 5: 15055-15055

Released	2015-10-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1)) Mus musculus
Macromolecule	Importin subunit alpha-1 (protein) Peptide from Nucleoprotein (protein)

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4ZHZ \| pdb_00004zhz	Download File View File

Endonuclease inhibitor bound to influenza strain H1N1 polymerase acidic subunit N-terminal region with expelling one of the metal ions in the active site

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.

(2016) Biochemistry 55: 2646-2660

Released	2015-05-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	4P8, MN, SO4

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4ZI0 \| pdb_00004zi0	Download File View File

Endonuclease inhibitor bound to influenza strain H1N1 polymerase acidic subunit N-terminal region without a chelation to the metal ions in the active site

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.

(2016) Biochemistry 55: 2646-2660

Released	2015-05-13
Method	X-RAY DIFFRACTION 1.802 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	4P9, MN, SO4

1 to 25 of 53 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1RU7 | pdb_00001ru7

1RVX | pdb_00001rvx

1RVZ | pdb_00001rvz

2HN8 | pdb_00002hn8

2YMN | pdb_00002ymn

2ZNL | pdb_00002znl

2ZTT | pdb_00002ztt

3A1G | pdb_00003a1g

3L4Q | pdb_00003l4q

3RVC | pdb_00003rvc

3VDX | pdb_00003vdx

3WI0 | pdb_00003wi0

3WI1 | pdb_00003wi1

4D9J | pdb_00004d9j

4ENF | pdb_00004enf

4IQ4 | pdb_00004iq4

4ITV | pdb_00004itv

4IVJ | pdb_00004ivj

4J2R | pdb_00004j2r

4N8C | pdb_00004n8c

4U6O | pdb_00004u6o

4YYL | pdb_00004yyl

4ZDU | pdb_00004zdu

4ZHZ | pdb_00004zhz

4ZI0 | pdb_00004zi0