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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Influenza A virus (A/Viet Nam/1203/2004(H5N1))"

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Search Summary

This query matches 34 Structures.

Refinements

Structure Determination Methodology

experimental (34)

Scientific Name of Source Organism

	Influenza A virus (A/Viet Nam/1203/2004(H5N1)) (34)
	Homo sapiens (7)
	Mus musculus (2)

Taxonomy

	Riboviria (34)
	Eukaryota (9)

Experimental Method

	X-RAY DIFFRACTION (33)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (34)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (15)
	2.5 - 3.0 (8)
	3.0 - 3.5 (7)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (6)
	2010 - 2014 (19)
	2015 - 2019 (6)
	2020 - 2024 (3)

Enzyme Classification Name

Hydrolases (10)

Symmetry Type

	Cyclic (24)
	Asymmetric (11)

SCOP Classification

	Artifacts (16)
	All beta proteins (19)
	Coiled coil proteins (16)
	Alpha and beta proteins (a/b) (7)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 34 Structures

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2FK0 \| pdb_00002fk0	Download File View File

Crystal Structure of a H5N1 influenza virus hemagglutinin.

Stevens, J., Wilson, I.A.

(2006) Science 312: 404-410

Released	2006-05-02
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	hemagglutinin (protein)
Unique branched monosaccharides	BMA, NAG

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3CKZ \| pdb_00003ckz	Download File View File

N1 Neuraminidase H274Y + Zanamivir

Colllins, P., Haire, L.F., Lin, Y.P., Liu, J., Russell, R.J., Walker, P.A., Skehel, J.J., Martin, S.R., Hay, A.J., Gamblin, S.J.

(2008) Nature 453: 1258-1261

Released	2008-05-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Neuraminidase (protein)
Unique Ligands	CA, ZMR

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3CL0 \| pdb_00003cl0	Download File View File

N1 Neuraminidase H274Y + oseltamivir

Collins, P., Haire, L.F., Lin, Y.P., Liu, J., Russell, R.J., Walker, P.A., Skehel, J.J., Martin, S.R., Hay, A.J., Gamblin, S.J.

(2008) Nature 453: 1258-1261

Released	2008-05-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Neuraminidase (protein)
Unique Ligands	CA, G39

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3CL2 \| pdb_00003cl2	Download File View File

N1 Neuraminidase N294S + Oseltamivir

Collins, P., Haire, L.F., Lin, Y.P., Liu, J., Russell, R.J., Walker, P.A., Skehel, J.J., Martin, S.R., Hay, A.J., Gamblin, S.J.

(2008) Nature 453: 1258-1261

Released	2008-05-20
Method	X-RAY DIFFRACTION 2.538 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Neuraminidase (protein)
Unique Ligands	G39

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3FKU \| pdb_00003fku	Download File View File

Crystal structure of influenza hemagglutinin (H5) in complex with a broadly neutralizing antibody F10

Hwang, W.C., Santelli, E., Stec, B., Wei, G., Cadwell, G., Bankston, L.A., Sui, J., Perez, S., Aird, D., Chen, L.M., Ali, M., Murakami, A., Yammanuru, A., Han, T., Cox, N., Donis, R.O., Liddington, R.C., Marasco, W.A.

(2009) Nat Struct Mol Biol 16: 265-273

Released	2009-02-24
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Hemagglutinin (protein) Hemagglutinin HA2 chain (protein) Neutralizing antibody F10 (protein)
Unique branched monosaccharides	BMA, NAG

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3GBM \| pdb_00003gbm	Download File View File

Crystal Structure of Fab CR6261 in Complex with a H5N1 influenza virus hemagglutinin.

Ekiert, D.C., Elsliger, M.A., Wilson, I.A.

(2009) Science 324: 246-251

Released	2009-03-10
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Hemagglutinin (protein) antibody (Fab) (protein)
Unique Ligands	BMA, EDO, GOL, NAG
Unique branched monosaccharides	NAG

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3KC6 \| pdb_00003kc6	Download File View File

Crystal structure of the large c-terminal domain of polymerase basic protein 2 from influenza virus a/viet nam/1203/2004 (h5n1)

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2010) PLoS Pathog 6: e1001034-e1001034

Released	2010-03-09
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase PB2 (protein)
Unique Ligands	EDO

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3L56 \| pdb_00003l56	Download File View File

Crystal structure of the large c-terminal domain of polymerase basic protein 2 from influenza virus a/viet nam/1203/2004 (h5n1)

Staker, B.L., Edwards, T., Eric, S., Raymond, A., Stewart, L., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2010) PLoS Pathog 6: e1001034-e1001034

Released	2010-03-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase PB2 (protein)

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4BH2 \| pdb_00004bh2	Download File View File

Crystal Structure of the Haemagglutinin from a Transmissible Mutant H5 Influenza Virus

Xiong, X., Coombs, P.J., Martin, S.R., Liu, J., Xiao, H., McCauley, J.W., Locher, K., Walker, P.A., Collins, P.J., Kawaoka, Y., Skehel, J.J., Gamblin, S.J.

(2013) Nature 497: 392

Released	2013-04-24
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	HEMAGGLUTININ (protein)
Unique Ligands	EPE, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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4BH3 \| pdb_00004bh3	Download File View File

Haemagglutinin from a Transmissible Mutant H5 Influenza Virus in Complex with Human Receptor Analogue 6'-SLN

Xiong, X., Coombs, P.J., Martin, S.R., Liu, J., Xiao, H., McCauley, J.W., Locher, K., Walker, P.A., Collins, P.J., Kawaoka, Y., Skehel, J.J., Gamblin, S.J.

(2013) Nature 497: 392

Released	2013-04-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	HEMAGGLUTININ (protein)
Unique Ligands	EPE, NAG
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG, SIA

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4BH4 \| pdb_00004bh4	Download File View File

Haemagglutinin from a Transmissible Mutant H5 Influenza Virus in Complex with Avian Receptor Analogue 3'-SLN

Xiong, X., Coombs, P.J., Martin, S.R., Liu, J., Xiao, H., McCauley, J.W., Locher, K., Walker, P.A., Collins, P.J., Kawaoka, Y., Skehel, J.J., Gamblin, S.J.

(2013) Nature 497: 392

Released	2013-04-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	HEMAGGLUTININ (protein)
Unique Ligands	EPE, NAG
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG, SIA

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4E5E \| pdb_00004e5e	Download File View File

Crystal structure of avian influenza virus PAn Apo

DuBois, R.M., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.048 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	MN, SO4

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4E5F \| pdb_00004e5f	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 1

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.392 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	0N7, MN, SO4

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4E5G \| pdb_00004e5g	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 2

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.647 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	MN, SO4, XI7

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4E5H \| pdb_00004e5h	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 3

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.158 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	0N8, MN, SO4

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4E5I \| pdb_00004e5i	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 4

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.944 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	0N9, MN, SO4

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4E5J \| pdb_00004e5j	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 5

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	581, MN, SO4

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4E5L \| pdb_00004e5l	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 6

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.469 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	DBH, MN, SO4

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4FQI \| pdb_00004fqi	Download File View File

Crystal Structure of Fab CR9114 in Complex with a H5N1 influenza virus hemagglutinin

Dreyfus, C., Wilson, I.A.

(2012) Science 337: 1343-1348

Released	2012-08-22
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Hemagglutinin HA1 (protein) Hemagglutinin HA2 (protein) antibody CR9114 heavy chain (protein) antibody CR9114 light chain (protein)
Unique Ligands	EDO, GOL, NAG
Unique branched monosaccharides	NAG

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4KDM \| pdb_00004kdm	Download File View File

Crystal structure of the hemagglutinin of ferret-transmissible H5N1 virus

Lu, X., Shi, Y., Zhang, W., Zhang, Y., Qi, J., Gao, G.F.

(2013) Protein Cell 4: 502-511

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.496 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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4KDN \| pdb_00004kdn	Download File View File

Crystal structure of the hemagglutinin of ferret-transmissible H5N1 virus in complex with avian receptor analog LSTa

Lu, X., Shi, Y., Zhang, W., Zhang, Y., Qi, J., Gao, G.F.

(2013) Protein Cell 4: 502-511

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.483 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Hemagglutinin (protein)
Unique Ligands	NAG, SIA
Unique branched monosaccharides	NAG

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4KDO \| pdb_00004kdo	Download File View File

Crystal structure of the hemagglutinin of ferret-transmissible H5N1 virus in complex with human receptor analog LSTc

Lu, X., Shi, Y., Zhang, W., Zhang, Y., Qi, J., Gao, G.F.

(2013) Protein Cell 4: 502-511

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.396 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Hemagglutinin (protein)
Unique Ligands	NAG, SIA
Unique branched monosaccharides	GAL, NAG, SIA

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4MHH \| pdb_00004mhh	Download File View File

Crystal structure of Fab H5M9 in complex with influenza virus hemagglutinin from A/Viet Nam/1203/2004 (H5N1)

Zhu, X., Wilson, I.A.

(2013) J Virol 87: 12619-12635

Released	2013-10-02
Method	X-RAY DIFFRACTION 3.564 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1)) Mus musculus
Macromolecule	H5M9 antibody, heavy chain (IgG1) (protein) H5M9 antibody, light chain (kappa) (protein) Hemagglutinin HA1 chain (protein) Hemagglutinin HA2 chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	MAN, NAG

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4N5Y \| pdb_00004n5y	Download File View File

Crystal structure of H5 hemagglutinin mutant (N158D, N224K and Q226L) from the influenza virus A/Viet Nam/1203/2004 (H5N1)

Zhu, X., Wilson, I.A.

(2014) J Virol 88: 768-773

Released	2013-11-20
Method	X-RAY DIFFRACTION 3.1615 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Hemagglutinin HA1 chain (protein) Hemagglutinin HA2 chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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4N5Z \| pdb_00004n5z	Download File View File

Crystal structure of aerosol transmissible influenza H5 hemagglutinin mutant (N158D, N224K, Q226L and T318I) from the influenza virus A/Viet Nam/1203/2004 (H5N1)

Zhu, X., Wilson, I.A.

(2014) J Virol 88: 768-773

Released	2013-11-20
Method	X-RAY DIFFRACTION 2.9537 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Hemagglutinin (protein) Hemagglutinin HA1 chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

1 to 25 of 34 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2FK0 | pdb_00002fk0

3CKZ | pdb_00003ckz

3CL0 | pdb_00003cl0

3CL2 | pdb_00003cl2

3FKU | pdb_00003fku

3GBM | pdb_00003gbm

3KC6 | pdb_00003kc6

3L56 | pdb_00003l56

4BH2 | pdb_00004bh2

4BH3 | pdb_00004bh3

4BH4 | pdb_00004bh4

4E5E | pdb_00004e5e

4E5F | pdb_00004e5f

4E5G | pdb_00004e5g

4E5H | pdb_00004e5h

4E5I | pdb_00004e5i

4E5J | pdb_00004e5j

4E5L | pdb_00004e5l

4FQI | pdb_00004fqi

4KDM | pdb_00004kdm

4KDN | pdb_00004kdn

4KDO | pdb_00004kdo

4MHH | pdb_00004mhh

4N5Y | pdb_00004n5y

4N5Z | pdb_00004n5z