RCSB PDB: Search

1ZBP \| pdb_00001zbp	Download File View File

X-Ray Crystal Structure of Protein VPA1032 from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR44

Forouhar, F., Yong, W., Vorobiev, S.M., Ciao, M., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2007) J Struct Funct Genomics 8: 37-44

Released	2005-04-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	hypothetical protein VPA1032 (protein)

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2JRM \| pdb_00002jrm	Download File View File

Solution NMR structure of ribosome modulation factor VP1593 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR55

Tang, Y., Rossi, P., Swapna, G., Wang, H., Jiang, M., Cunningham, K., Owens, L., Ma, L., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2007-07-17
Method	SOLUTION NMR
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Ribosome modulation factor (protein)

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2JZ5 \| pdb_00002jz5	Download File View File

NMR solution structure of protein VPA0419 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR68

Singarapu, K.K., Sukumaran, D.K., Eletski, A., Parish, D., Zhao, L., Jiang, M., Maglaqui, M., Xiao, R., Liu, J., Baran, M.C., Swapna, G., Acton, T., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

(2010) Proteins 78: 779-784

Released	2008-02-19
Method	SOLUTION NMR
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Uncharacterized protein VPA0419 (protein)

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2OD0 \| pdb_00002od0	Download File View File

The crystal structure of gene product VP1028 from Vibrio parahaemolyticus

Zhang, R., Zhou, M., Moy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-01-23
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Hypothetical protein VP1028 (protein)
Unique Ligands	MG, SO4

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2OEZ \| pdb_00002oez	Download File View File

Protein of Unknown Function (DUF1342) from Vibrio parahaemolyticus

Kim, Y., Volkart, L., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-01-30
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	UPF0289 protein VP2528 (protein)

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2OYZ \| pdb_00002oyz	Download File View File

Crystal structure of unknown function protein VPA0057 from Vibrio parahaemolyticus (targeted domain 2-94)

Chang, C., Volkart, L., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-03-20
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	UPF0345 protein VPA0057 (protein)

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2P3Y \| pdb_00002p3y	Download File View File

Crystal structure of VPA0735 from Vibrio parahaemolyticus. NorthEast Structural Genomics target VpR109

Seetharaman, J., Neely, H., Forouhar, F., Wang, D., Fang, Y., Cunningham, K., Ma, L.-C., Xia, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2007-03-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Hypothetical protein VPA0735 (protein)

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2P7J \| pdb_00002p7j	Download File View File

Crystal structure of the domain of putative sensory box/GGDEF family protein from Vibrio parahaemolyticus

Wu, R., James, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-05-01
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Putative sensory box/GGDEF family protein (protein)
Unique Ligands	ACY, NA, SO4

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2QHK \| pdb_00002qhk	Download File View File

Crystal structure of methyl-accepting chemotaxis protein from Vibrio parahaemolyticus RIMD 2210633

Zhang, R., Li, H., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-08-21
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Methyl-accepting chemotaxis protein (protein)
Unique Ligands	GOL

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2QHQ \| pdb_00002qhq	Download File View File

Crystal structure of unknown function protein VPA0580

Chang, C., Kim, Y., Volkart, L., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-07-17
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Unknown function protein VPA0580 (protein)
Unique Ligands	ACT

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2QIP \| pdb_00002qip	Download File View File

Crystal structure of a protein of unknown function VPA0982 from Vibrio parahaemolyticus RIMD 2210633

Tan, K., Duggan, E., Moy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-07-24
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Protein of unknown function VPA0982 (protein)
Unique Ligands	EDO

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2QM2 \| pdb_00002qm2	Download File View File

Putative HopJ type III effector protein from Vibrio parahaemolyticus

Kim, Y., Chang, C., Volkart, L., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-07-31
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Putative HopJ type III effector protein (protein)
Unique Ligands	GOL, K, NA, TRS

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2QMA \| pdb_00002qma	Download File View File

Crystal structure of glutamate decarboxylase domain of diaminobutyrate-pyruvate transaminase and L-2,4-diaminobutyrate decarboxylase from Vibrio parahaemolyticus

Osipiuk, J., Sather, A., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-07-31
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Diaminobutyrate-pyruvate transaminase and L-2,4-diaminobutyrate decarboxylase (protein)
Unique Ligands	EDO

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2QRR \| pdb_00002qrr	Download File View File

Crystal structure of the soluble domain of the ABC transporter, ATP-binding protein from Vibrio parahaemolyticus

Kim, Y., Zhou, M., Freeman, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-08-14
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Methionine import ATP-binding protein metN (protein)
Unique Ligands	CL

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2QSX \| pdb_00002qsx	Download File View File

Crystal structure of putative transcriptional regulator LysR From Vibrio parahaemolyticus

Wu, R., Abdullah, J., Binkowski, T.A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-09-04
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Putative transcriptional regulator, LysR family (protein)
Unique Ligands	SO4

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2R39 \| pdb_00002r39	Download File View File

Crystal structure of FixG-related protein from Vibrio parahaemolyticus

Chang, C., Bigelow, L., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-09-11
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	FixG-related protein (protein)

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2R5S \| pdb_00002r5s	Download File View File

The crystal structure of a domain of protein VP0806 (unknown function) from Vibrio parahaemolyticus RIMD 2210633

Tan, K., Wu, R., Abdullah, J., Freeman, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-09-18
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Uncharacterized protein VP0806 (protein)
Unique Ligands	ACT, EDO, MES

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2ZZS \| pdb_00002zzs	Download File View File

Crystal structure of cytochrome c554 from Vibrio parahaemolyticus strain RIMD2210633

Akazaki, H., Kawai, F., Kumaki, Y., Sekine, K., Hakamata, W., Nishio, T., Park, S.-Y., Oku, T.

To be published

Released	2010-03-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Cytochrome c554 (protein)
Unique Ligands	GOL, HEC

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3B33 \| pdb_00003b33	Download File View File

Crystal structure of the PAS domain of nitrogen regulation protein NR(II) from Vibrio parahaemolyticus

Osipiuk, J., Sather, A., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-10-30
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Sensor protein (protein)

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3B4S \| pdb_00003b4s	Download File View File

Crystal structure of a LuxT domain from Vibrio parahaemolyticus RIMD 2210633

Tan, K., Zhou, M., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-11-06
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Protein LuxT (protein)

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3B79 \| pdb_00003b79	Download File View File

Crystal structure of the N-terminal peptidase C39 like domain of the toxin secretion ATP-binding protein from Vibrio parahaemolyticus

Kim, Y., Li, H., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-11-13
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Toxin secretion ATP-binding protein (protein)

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3BEE \| pdb_00003bee	Download File View File

Crystal structure of putative YfrE protein from Vibrio parahaemolyticus

Chang, C., Hatzos, C., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-12-04
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Putative YfrE protein (protein)
Unique Ligands	EDO

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3BK5 \| pdb_00003bk5	Download File View File

Crystal structure of putative outer membrane lipoprotein-sorting protein domain from Vibrio parahaemolyticus

Wu, R., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	putative outer membrane lipoprotein-sorting protein (protein)
Unique Ligands	MG

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3BRJ \| pdb_00003brj	Download File View File

Crystal structure of mannitol operon repressor (MtlR) from Vibrio parahaemolyticus RIMD 2210633

Tan, K., Zhou, M., Moy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2009) J Biological Chem 284: 36670-36679

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Mannitol operon repressor (protein)
Unique Ligands	EDO, GOL

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3C0D \| pdb_00003c0d	Download File View File

Crystal structure of the putative nitrite reductase NADPH (small subunit) oxidoreductase protein Q87HB1. Northeast Structural Genomics Consortium target VpR162

Kuzin, A.P., Abashidze, M., Seetharaman, J., Vorobiev, S.M., Wang, D., Fang, Y., Owens, L., Ma, L.-C., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2008-03-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	Putative nitrite reductase NADPH (Small subunit) oxidoreductase protein (protein)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ZBP | pdb_00001zbp

2JRM | pdb_00002jrm

2JZ5 | pdb_00002jz5

2OD0 | pdb_00002od0

2OEZ | pdb_00002oez

2OYZ | pdb_00002oyz

2P3Y | pdb_00002p3y

2P7J | pdb_00002p7j

2QHK | pdb_00002qhk

2QHQ | pdb_00002qhq

2QIP | pdb_00002qip

2QM2 | pdb_00002qm2

2QMA | pdb_00002qma

2QRR | pdb_00002qrr

2QSX | pdb_00002qsx

2R39 | pdb_00002r39

2R5S | pdb_00002r5s

2ZZS | pdb_00002zzs

3B33 | pdb_00003b33

3B4S | pdb_00003b4s

3B79 | pdb_00003b79

3BEE | pdb_00003bee

3BK5 | pdb_00003bk5

3BRJ | pdb_00003brj

3C0D | pdb_00003c0d