RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Chem Comp Monomers (Polymer Entity Container Identifiers) = "G"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 8,002 Structures.

Refinements

Structure Determination Methodology

experimental (8,002)

Scientific Name of Source Organism

	synthetic construct (1,579)
	Homo sapiens (1,281)
	Escherichia coli (1,020)
	Escherichia coli K-12 (456)
	Thermus thermophilus HB8 (424)
	Saccharomyces cerevisiae (403)
	Saccharomyces cerevisiae S288C (263)
	Thermus thermophilus (153)
	Oryctolagus cuniculus (139)
	Mus musculus (122)

More...

Taxonomy

	Bacteria (3,187)
	Eukaryota (2,765)
	other sequences (1,588)
	Riboviria (751)
	Archaea (324)
	Duplodnaviria (200)
	unclassified sequences (65)
	Varidnaviria (34)
	unclassified bacterial viruses (14)
	Riboviria (RNA viruses and viroids) (7)

More...

Experimental Method

	X-RAY DIFFRACTION (3,696)
	ELECTRON MICROSCOPY (3,540)
	SOLUTION NMR (757)
	SOLUTION SCATTERING (11)
	FIBER DIFFRACTION (5)
	SOLID-STATE NMR (4)
	FLUORESCENCE TRANSFER (1)
	NEUTRON DIFFRACTION (1)
	THEORETICAL MODEL (1)

Polymer Entity Type

	RNA (7,871)
	Protein (5,918)
	DNA (1,274)
	NA-hybrid (191)
	Other (6)

Refinement Resolution (Å)

	0.5 - 1.0 (17)
	1.0 - 1.5 (185)
	1.5 - 2.0 (531)
	2.0 - 2.5 (868)
	2.5 - 3.0 (1,831)
	3.0 - 3.5 (1,956)
	3.5 - 4.0 (978)
	4.0 - 4.5 (313)
	> 4.5 (562)

Release Date

	1975 - 1979 (2)
	1985 - 1989 (8)
	1990 - 1994 (15)
	1995 - 1999 (213)
	2000 - 2004 (458)
	2005 - 2009 (769)
	2010 - 2014 (1,110)
	2015 - 2019 (1,787)
	2020 - 2024 (3,439)
	2025 - 2029 (201)

Enzyme Classification Name

	Transferases (1,549)
	Hydrolases (1,606)
	Lyases (276)
	Isomerases (124)
	Ligases (144)
	Oxidoreductases (34)
	Translocases (1)

Membrane Protein Annotation

	OPM (13)
	PDBTM (13)
	MemProtMD (11)
	mpstruc (4)

Symmetry Type

	Asymmetric (5,408)
	Cyclic (420)
	Dihedral (58)
	Icosahedral (38)
	Helical (27)

SCOP Classification

	Alpha and beta proteins (a+b) (373)
	All beta proteins (251)
	Low resolution protein structures (79)
	All alpha proteins (258)
	Alpha and beta proteins (a/b) (240)
	Small proteins (146)
	Multi-domain proteins (alpha and beta) (91)
	Artifacts (84)
	Peptides (99)
	Coiled coil proteins (4)

More...

AllSelected

1 to 25 of 8,002 Structures

Page 1 of 321

Sort by

Explore in 3D

100D	Download File View File

CRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRING

Ban, C., Ramakrishnan, B., Sundaralingam, M.

(1994) Nucleic Acids Res 22: 5466-5476

Released	1995-03-31
Method	X-RAY DIFFRACTION 1.9 Å
Macromolecule	DNA/RNA (5'-R(CP)-D(CPGPGPCPGPCPCPGP)-R(G)-3') (hybrid)
Unique Ligands	SPM

Explore in 3D

104D	Download File View File

DNA DUPLEXES FLANKED BY HYBRID DUPLEXES: THE SOLUTION STRUCTURE OF CHIMERIC JUNCTIONS IN

Zhu, L., Salazar, M., Reid, B.R.

(1995) Biochemistry 34: 2372-2380

Released	1995-03-31
Method	SOLUTION NMR
Macromolecule	DNA/RNA (5'-R(CPGPCPG)-D(PTPAPTPAPCPGPCPG)-3') (hybrid)

Explore in 3D

124D	Download File View File

STRUCTURE OF A DNA:RNA HYBRID DUPLEX: WHY RNASE H DOES NOT CLEAVE PURE RNA

Fedoroff, O.Y., Salazar, M., Reid, B.R.

(1993) J Mol Biology 233: 509-523

Released	1993-10-31
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPTPCPAPCPAPTPG)-3') (nucleic acid) RNA (5'-R(CPAPUPGPUPGPAPC)-3') (nucleic acid)

Explore in 3D

157D	Download File View File

CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BASE-PAIRS

Leonard, G.A., McAuley-Hecht, K.E., Ebel, S., Lough, D.M., Brown, T., Hunter, W.N.

(1994) Structure 2: 483-494

Released	1994-05-31
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	RNA (5'-R(CPGPCPGPAPAPUPUPAPGPCPG)-3') (nucleic acid)

Explore in 3D

161D	Download File View File

A SINGLE 2'-HYDROXYL GROUP CONVERTS B-DNA TO A-DNA: CRYSTAL STRUCTURE OF THE DNA-RNA CHIMERIC DECAMER DUPLEX D(CCGGC)R(G)D(CCGG) WITH A NOVEL INTERMOLECULAR G.C BASE-PAIRED QUADRUPLET

Ban, C., Ramakrishnan, B., Sundaralingam, M.

(1994) J Mol Biology 236: 275-285

Released	1994-05-18
Method	X-RAY DIFFRACTION 1.9 Å
Macromolecule	DNA/RNA (5'-D(CPCPGPGPCP)-R(GP)-D(CPCPGPG)-3') (hybrid)

Explore in 3D

165D	Download File View File

THE STRUCTURE OF A MISPAIRED RNA DOUBLE HELIX AT 1.6 ANGSTROMS RESOLUTION AND IMPLICATIONS FOR THE PREDICTION OF RNA SECONDARY STRUCTURE

Cruse, W., Saludjian, P., Biala, E., Strazewski, P., Prange, T., Kennard, O.

(1994) Proc Natl Acad Sci U S A 91: 4160-4164

Released	1994-08-31
Method	X-RAY DIFFRACTION 1.55 Å
Macromolecule	DNA/RNA (5'-R(GPCPUPUPCPGPGPCP)-D((BRU))-3') (nucleic acid)
Unique Ligands	RHD

Explore in 3D

169D	Download File View File

THE SOLUTION STRUCTURE OF THE R(GCG)D(TATACCC):D(GGGTATACGC) OKAZAKI FRAGMENT CONTAINS TWO DISTINCT DUPLEX MORPHOLOGIES CONNECTED BY A JUNCTION

Salazar, M., Fedoroff, O.Y., Zhu, L., Reid, B.R.

(1994) J Mol Biology 241: 440-455

Released	1994-07-31
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPGPGPTPAPTPAPCPGPC)-3') (nucleic acid) DNA/RNA (5'-R(GPCPG)-D(PTPAPTPAPCPCPC)-3') (hybrid)

Explore in 3D

176D	Download File View File

NMR SOLUTION STRUCTURE OF A PEPTIDE NUCLEIC ACID COMPLEXED WITH RNA

Brown, S.C., Veal, J.M.

(1994) Science 265: 777-780

Released	1994-11-01
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(PGPAPGPUPUPC)-3') (nucleic acid)

Explore in 3D

17RA	Download File View File

BRANCHPOINT HELIX FROM YEAST AND BINDING SITE FOR PHAGE GA/MS2 COAT PROTEINS, NMR, 12 STRUCTURES

Nikonowicz, E.P., Smith, J.S.

(1998) Biochemistry 37: 13486-13498

Released	1999-04-20
Method	SOLUTION NMR
Macromolecule	RNA (nucleic acid)

Explore in 3D

1A1T	Download File View File

STRUCTURE OF THE HIV-1 NUCLEOCAPSID PROTEIN BOUND TO THE SL3 PSI-RNA RECOGNITION ELEMENT, NMR, 25 STRUCTURES

De Guzman, R.N., Wu, Z.R., Stalling, C.C., Pappalardo, L., Borer, P.N., Summers, M.F.

(1998) Science 279: 384-388

Released	1998-06-17
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	NUCLEOCAPSID PROTEIN (protein) SL3 STEM-LOOP RNA (nucleic acid)
Unique Ligands	ZN

Explore in 3D

1A3M	Download File View File

PAROMOMYCIN BINDING INDUCES A LOCAL CONFORMATIONAL CHANGE IN THE A SITE OF 16S RRNA, NMR, 20 STRUCTURES

Fourmy, D., Yoshizawa, S., Puglisi, J.D.

(1998) J Mol Biology 277: 333-345

Released	1998-04-29
Method	SOLUTION NMR
Macromolecule	16S RRNA (5'-R(GPGPCPGPUPCPAPCPAPCPCPUPUPC)-3') (nucleic acid) 16S RRNA (5'-R(GPGPGPUPGPAPAPGPUPCPGPCP*C)-3') (nucleic acid)

Explore in 3D

1A4D	Download File View File

LOOP D/LOOP E ARM OF ESCHERICHIA COLI 5S RRNA, NMR, MINIMIZED AVERAGE STRUCTURE

Dallas, A., Moore, P.B.

(1997) Structure 5: 1639-1653

Released	1998-04-29
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	RNA (5'-R(GPGPCPCPGPAPUPGPGPUPAPGPUPGPUPGPGPGPGPUPC)-3') (nucleic acid) RNA (5'-R(PUPCPCPCPCPAPUPGPCPGPAPGPAPGPUPAPGPGPCP*C)-3') (nucleic acid)

Explore in 3D

1A4T	Download File View File

SOLUTION STRUCTURE OF PHAGE P22 N PEPTIDE-BOX B RNA COMPLEX, NMR, 20 STRUCTURES

Cai, Z., Gorin, A.A., Frederick, R., Ye, X., Hu, W., Majumdar, A., Kettani, A., Patel, D.J.

(1998) Nat Struct Biol 5: 203-212

Released	1998-04-29
Method	SOLUTION NMR
Organisms	Lederbergvirus P22
Macromolecule	20-MER BASIC PEPTIDE (protein) BOXB RNA (nucleic acid)

Explore in 3D

1A51	Download File View File

LOOP D/LOOP E ARM OF E. COLI 5S RRNA, NMR, 9 STRUCTURES

Dallas, A., Moore, P.B.

(1997) Structure 5: 1639-1653

Released	1998-05-27
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	5S RRNA LOOP D/LOOP E (nucleic acid)

Explore in 3D

1A60	Download File View File

NMR STRUCTURE OF A CLASSICAL PSEUDOKNOT: INTERPLAY OF SINGLE-AND DOUBLE-STRANDED RNA, 24 STRUCTURES

Kolk, M.H., Van Der Graaf, M., Wijmenga, S.S., Pleij, C.W.A., Heus, H.A., Hilbers, C.W.

(1998) Science 280: 434-438

Released	1998-05-27
Method	SOLUTION NMR
Organisms	Turnip yellow mosaic virus
Macromolecule	TYMV PSEUDOKNOT (nucleic acid)

Explore in 3D

1A9L	Download File View File

SOLUTION STRUCTURE OF A SUBSTRATE FOR THE ARCHAEAL PRE-TRNA SPLICING ENDONUCLEASES: THE BULGE-HELIX-BULGE MOTIF, NMR, 12 STRUCTURES

Diener, J.L., Moore, P.B.

(1998) Mol Cell 1: 883-894

Released	1998-06-17
Method	SOLUTION NMR
Macromolecule	PRE-TRNA BULGE-HELIX-BULGE MOTIF (nucleic acid)

Explore in 3D

1A9N	Download File View File

CRYSTAL STRUCTURE OF THE SPLICEOSOMAL U2B''-U2A' PROTEIN COMPLEX BOUND TO A FRAGMENT OF U2 SMALL NUCLEAR RNA

Price, S.R., Evans, P.R., Nagai, K.

(1998) Nature 394: 645-650

Released	1998-09-23
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Homo sapiens
Macromolecule	SPLICEOSOMAL U2B'' (protein) U2A' (protein) RNA (5'-R(CPCPUPGPGPUPAPUPUPGPCPAPGPUPAPCPCPUPCPCPAPGP* GP*U)-3') (nucleic acid)

Explore in 3D

1AC3	Download File View File

SOLUTION STRUCTURE OF AN RNA-DNA HYBRID DUPLEX CONTAINING A 3'-THIOFORMACETAL LINKER AND AN RNA A-TRACT, NMR, 8 STRUCTURES

Cross, C.W., Rice, J.S., Gao, X.

(1997) Biochemistry 36: 4096-4107

Released	1997-06-16
Method	SOLUTION NMR
Macromolecule	ANTISENSE HYBRID DUPLEX (nucleic acid) DNA (5'-D((TCP)PTPGPCPGPC)-3') (nucleic acid)

Explore in 3D

1AFX	Download File View File

UGAA EUKARYOTIC RIBOSOMAL RNA TETRALOOP, NMR, 13 STRUCTURES

Butcher, S.E., Dieckmann, T., Feigon, J.

(1999) Nat Struct Biol 6: 212-216

Released	1997-05-15
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(GPGPUPGPUPGPAPAPCPAPCPC)-3') (nucleic acid)

Explore in 3D

1AJF	Download File View File

SOLUTION STRUCTURE OF THE P5B STEM LOOP FROM A GROUP I INTRON COMPLEXED WITH COBALT (III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURE

Kieft, J.S., Tinoco Junior, I.

(1997) Structure 5: 713-721

Released	1997-07-07
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	RNA (5'-R(GPAPCPAPGPGPGPGPAPAPAPCPUPUPUPGPUPC)-3') (nucleic acid)
Unique Ligands	NCO

Explore in 3D

1AJL	Download File View File

FIVE-NUCLEOTIDE BULGE LOOP FROM TETRAHYMENA THERMOPHILA GROUP I INTRON

Luebke, K.J., Landry, S.M., Tinoco Junior, I.

(1997) Biochemistry 36: 10246-10255

Released	1997-07-07
Method	SOLUTION NMR
Organisms	Tetrahymena thermophila
Macromolecule	RNA (5'-R(GPAPGPUPAPCPC)-3') (nucleic acid) RNA (5'-R(GPGPUPAPAPUPAPAPGPCPUP*C)-3') (nucleic acid)

Explore in 3D

1AJT	Download File View File

FIVE-NUCLEOTIDE BULGE LOOP FROM TETRAHYMENA THERMOPHILA GROUP I INTRON, NMR, 1 STRUCTURE

Luebke, K.J., Landry, S.M., Tinoco Junior, I.

(1997) Biochemistry 36: 10246-10255

Released	1997-08-20
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(GPAPGPUPAPCPC)-3') (nucleic acid) RNA (5'-R(GPGPUPAPAPUPAPAPGPCPUP*C)-3') (nucleic acid)