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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "RNA"

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Search Summary

This query matches 6,805 Structures.

Refinements

Structure Determination Methodology

experimental (6,805)

Scientific Name of Source Organism

	Homo sapiens (1,613)
	synthetic construct (1,230)
	Escherichia coli (310)
	Saccharomyces cerevisiae (234)
	Mus musculus (177)
	Saccharomyces cerevisiae S288C (138)
	Escherichia coli K-12 (132)
	Drosophila melanogaster (109)
	Thermus thermophilus (78)
	Caenorhabditis elegans (67)

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Taxonomy

	Eukaryota (2,832)
	Bacteria (1,833)
	other sequences (1,236)
	Riboviria (595)
	Archaea (289)
	Duplodnaviria (98)
	unclassified sequences (65)
	Varidnaviria (8)
	Riboviria (RNA viruses and viroids) (7)
	unclassified bacterial viruses (7)

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Experimental Method

	X-RAY DIFFRACTION (4,489)
	ELECTRON MICROSCOPY (1,182)
	SOLUTION NMR (1,124)
	SOLUTION SCATTERING (11)
	ELECTRON CRYSTALLOGRAPHY (6)
	FIBER DIFFRACTION (3)
	NEUTRON DIFFRACTION (2)
	SOLID-STATE NMR (2)

Polymer Entity Type

	RNA (4,844)
	Protein (4,732)
	DNA (857)
	NA-hybrid (182)
	Other (5)

Refinement Resolution (Å)

	0.5 - 1.0 (27)
	1.0 - 1.5 (378)
	1.5 - 2.0 (1,061)
	2.0 - 2.5 (1,048)
	2.5 - 3.0 (1,407)
	3.0 - 3.5 (1,046)
	3.5 - 4.0 (404)
	4.0 - 4.5 (133)
	> 4.5 (175)

Release Date

	1975 - 1979 (2)
	1985 - 1989 (11)
	1990 - 1994 (48)
	1995 - 1999 (235)
	2000 - 2004 (499)
	2005 - 2009 (997)
	2010 - 2014 (1,165)
	2015 - 2019 (1,478)
	2020 - 2024 (2,190)
	2025 - 2029 (180)

Enzyme Classification Name

	Transferases (918)
	Hydrolases (1,153)
	Ligases (142)
	Lyases (106)
	Oxidoreductases (33)
	Isomerases (63)

Membrane Protein Annotation

	MemProtMD (3)
	PDBTM (3)
	OPM (1)

Symmetry Type

	Asymmetric (3,822)
	Cyclic (833)
	Dihedral (113)
	Icosahedral (45)
	Helical (20)
	Tetrahedral (3)
	Octahedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (633)
	All beta proteins (324)
	Artifacts (365)
	Alpha and beta proteins (a/b) (244)
	All alpha proteins (225)
	Multi-domain proteins (alpha and beta) (92)
	Low resolution protein structures (17)
	Small proteins (48)
	Peptides (17)
	Coiled coil proteins (2)

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AllSelected

1 to 25 of 6,805 Structures

Page 1 of 273

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2JYF \| pdb_00002jyf	Download File View File

Tetraloop-receptor RNA complex

Zuo, X., Wang, J., Foster, T.R., Schwieters, C.D., Tiede, D.M.

To be published

Released	2008-10-07
Method	SOLUTION NMR
Macromolecule	RNA (43-MER) (nucleic acid)

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2JYH \| pdb_00002jyh	Download File View File

Rigid-body refinement of the tetraloop-receptor RNA complex

Zuo, X., Wang, J., Foster, T.R., Schwieters, C.D., Tiede, D.M.

To be published

Released	2008-10-07
Method	SOLUTION NMR
Macromolecule	RNA (43-MER) (nucleic acid)

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2JYJ \| pdb_00002jyj	Download File View File

Re-refining the tetraloop-receptor RNA-RNA complex using NMR-derived restraints and Xplor-nih (2.18)

Zuo, X., Wang, J., Foster, T.R., Schwieters, C.D., Tiede, D.M., Butcher, S.E., Wang, Y.

(2005) J Mol Biology 351: 371-382

Released	2008-10-07
Method	SOLUTION NMR
Macromolecule	RNA (43-MER) (nucleic acid)

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157D \| pdb_0000157d	Download File View File

CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BASE-PAIRS

Leonard, G.A., McAuley-Hecht, K.E., Ebel, S., Lough, D.M., Brown, T., Hunter, W.N.

(1994) Structure 2: 483-494

Released	1994-05-31
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	RNA (5'-R(CPGPCPGPAPAPUPUPAPGPCPG)-3') (nucleic acid)

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17RA \| pdb_000017ra	Download File View File

BRANCHPOINT HELIX FROM YEAST AND BINDING SITE FOR PHAGE GA/MS2 COAT PROTEINS, NMR, 12 STRUCTURES

Nikonowicz, E.P., Smith, J.S.

(1998) Biochemistry 37: 13486-13498

Released	1999-04-20
Method	SOLUTION NMR
Macromolecule	RNA (nucleic acid)

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1A3M \| pdb_00001a3m	Download File View File

PAROMOMYCIN BINDING INDUCES A LOCAL CONFORMATIONAL CHANGE IN THE A SITE OF 16S RRNA, NMR, 20 STRUCTURES

Fourmy, D., Yoshizawa, S., Puglisi, J.D.

(1998) J Mol Biology 277: 333-345

Released	1998-04-29
Method	SOLUTION NMR
Macromolecule	16S RRNA (5'-R(GPGPCPGPUPCPAPCPAPCPCPUPUPC)-3') (nucleic acid) 16S RRNA (5'-R(GPGPGPUPGPAPAPGPUPCPGPCP*C)-3') (nucleic acid)

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1A4D \| pdb_00001a4d	Download File View File

LOOP D/LOOP E ARM OF ESCHERICHIA COLI 5S RRNA, NMR, MINIMIZED AVERAGE STRUCTURE

Dallas, A., Moore, P.B.

(1997) Structure 5: 1639-1653

Released	1998-04-29
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	RNA (5'-R(GPGPCPCPGPAPUPGPGPUPAPGPUPGPUPGPGPGPGPUPC)-3') (nucleic acid) RNA (5'-R(PUPCPCPCPCPAPUPGPCPGPAPGPAPGPUPAPGPGPCP*C)-3') (nucleic acid)

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1A51 \| pdb_00001a51	Download File View File

LOOP D/LOOP E ARM OF E. COLI 5S RRNA, NMR, 9 STRUCTURES

Dallas, A., Moore, P.B.

(1997) Structure 5: 1639-1653

Released	1998-05-27
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	5S RRNA LOOP D/LOOP E (nucleic acid)

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1A60 \| pdb_00001a60	Download File View File

NMR STRUCTURE OF A CLASSICAL PSEUDOKNOT: INTERPLAY OF SINGLE-AND DOUBLE-STRANDED RNA, 24 STRUCTURES

Kolk, M.H., Van Der Graaf, M., Wijmenga, S.S., Pleij, C.W.A., Heus, H.A., Hilbers, C.W.

(1998) Science 280: 434-438

Released	1998-05-27
Method	SOLUTION NMR
Organisms	Turnip yellow mosaic virus
Macromolecule	TYMV PSEUDOKNOT (nucleic acid)

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1A9L \| pdb_00001a9l	Download File View File

SOLUTION STRUCTURE OF A SUBSTRATE FOR THE ARCHAEAL PRE-TRNA SPLICING ENDONUCLEASES: THE BULGE-HELIX-BULGE MOTIF, NMR, 12 STRUCTURES

Diener, J.L., Moore, P.B.

(1998) Mol Cell 1: 883-894

Released	1998-06-17
Method	SOLUTION NMR
Macromolecule	PRE-TRNA BULGE-HELIX-BULGE MOTIF (nucleic acid)

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1AFX \| pdb_00001afx	Download File View File

UGAA EUKARYOTIC RIBOSOMAL RNA TETRALOOP, NMR, 13 STRUCTURES

Butcher, S.E., Dieckmann, T., Feigon, J.

(1999) Nat Struct Biol 6: 212-216

Released	1997-05-15
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(GPGPUPGPUPGPAPAPCPAPCPC)-3') (nucleic acid)

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1AJF \| pdb_00001ajf	Download File View File

SOLUTION STRUCTURE OF THE P5B STEM LOOP FROM A GROUP I INTRON COMPLEXED WITH COBALT (III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURE

Kieft, J.S., Tinoco Junior, I.

(1997) Structure 5: 713-721

Released	1997-07-07
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	RNA (5'-R(GPAPCPAPGPGPGPGPAPAPAPCPUPUPUPGPUPC)-3') (nucleic acid)
Unique Ligands	NCO

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1AJL \| pdb_00001ajl	Download File View File

FIVE-NUCLEOTIDE BULGE LOOP FROM TETRAHYMENA THERMOPHILA GROUP I INTRON

Luebke, K.J., Landry, S.M., Tinoco Junior, I.

(1997) Biochemistry 36: 10246-10255

Released	1997-07-07
Method	SOLUTION NMR
Organisms	Tetrahymena thermophila
Macromolecule	RNA (5'-R(GPAPGPUPAPCPC)-3') (nucleic acid) RNA (5'-R(GPGPUPAPAPUPAPAPGPCPUP*C)-3') (nucleic acid)

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1AJT \| pdb_00001ajt	Download File View File

FIVE-NUCLEOTIDE BULGE LOOP FROM TETRAHYMENA THERMOPHILA GROUP I INTRON, NMR, 1 STRUCTURE

Luebke, K.J., Landry, S.M., Tinoco Junior, I.

(1997) Biochemistry 36: 10246-10255

Released	1997-08-20
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(GPAPGPUPAPCPC)-3') (nucleic acid) RNA (5'-R(GPGPUPAPAPUPAPAPGPCPUP*C)-3') (nucleic acid)

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1AJU \| pdb_00001aju	Download File View File

HIV-2 TAR-ARGININAMIDE COMPLEX, NMR, 20 STRUCTURES

Brodsky, A.S., Williamson, J.R.

(1997) J Mol Biology 267: 624-639

Released	1997-12-17
Method	SOLUTION NMR
Macromolecule	TAR RNA (nucleic acid)
Unique Ligands	ARG

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1AKX \| pdb_00001akx	Download File View File

HIV-2 TRANS ACTIVATING REGION RNA COMPLEX WITH ARGININAMIDE, NMR, MINIMIZED AVERAGE STRUCTURE

Brodsky, A.S., Williamson, J.R.

(1997) J Mol Biology 267: 624-639

Released	1997-11-19
Method	SOLUTION NMR
Macromolecule	TAR RNA (nucleic acid)
Unique Ligands	ARG

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1AL5 \| pdb_00001al5	Download File View File

A-TRACT RNA DODECAMER, NMR, 12 STRUCTURES

Conte, M.R., Conn, G.L., Brown, T., Lane, A.N.

(1997) Nucleic Acids Res 25: 2627-2634

Released	1997-12-17
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	RNA (5'-R(CPGPCPAPAPAPUPUPUPGPCPG)-3') (nucleic acid)

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1AM0 \| pdb_00001am0	Download File View File

AMP RNA APTAMER COMPLEX, NMR, 8 STRUCTURES

Jiang, F., Kumar, R.A., Jones, R.A., Patel, D.J.

(1996) Nature 382: 183-186

Released	1997-07-23
Method	SOLUTION NMR
Macromolecule	RNA APTAMER (nucleic acid)
Unique Ligands	AMP

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1ANR \| pdb_00001anr	Download File View File

CIS-ACTING RNA REGULATORY ELEMENT (HIV-1 TAR), NMR, 20 STRUCTURES

Aboul-Ela, F., Varani, G., Karn, J.

(1996) Nucleic Acids Res 24: 3974-3981

Released	1997-01-11
Method	SOLUTION NMR
Macromolecule	RNA REGULATORY ELEMENT TAR (nucleic acid)

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1AQO \| pdb_00001aqo	Download File View File

IRON RESPONSIVE ELEMENT RNA HAIRPIN, NMR, 15 STRUCTURES

Addess, K.J., Pardi, A.

(1997) J Mol Biology 274: 72-83

Released	1998-02-04
Method	SOLUTION NMR
Macromolecule	IRON RESPONSIVE ELEMENT RNA HAIRPIN (nucleic acid)

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1ARJ \| pdb_00001arj	Download File View File

ARG-BOUND TAR RNA, NMR

Aboul-Ela, F., Varani, G., Karn, J.

(1995) J Mol Biology 253: 313-332

Released	1996-11-08
Method	SOLUTION NMR
Macromolecule	TAR RNA (nucleic acid)
Unique Ligands	ARG

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1ATO \| pdb_00001ato	Download File View File

THE STRUCTURE OF THE ISOLATED, CENTRAL HAIRPIN OF THE HDV ANTIGENOMIC RIBOZYME, NMR, 10 STRUCTURES

Kolk, M.H., Heus, H.A., Hilbers, C.W.

(1997) EMBO J 16: 3685-3692

Released	1997-11-12
Method	SOLUTION NMR
Organisms	Hepatitis delta virus
Macromolecule	RNA (5'-R(GPGPCPAPCPCPUPCPCPUPCPGPCPGPGPUPGPCP*C)-3') (nucleic acid)