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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "VIRAL PROTEIN, TRANSCRIPTION"

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Influenza A virus (A/Viet Nam/1203/2004(H5N1)) (7)
	Human immunodeficiency virus 1 (5)
	Streptococcus mutans UA159 (2)
	Streptococcus pyogenes MGAS315 (2)
	Human herpesvirus 4 strain B95-8 (1)
	Human picobirnavirus strain Hy005102 (1)
	Murine norovirus 1 (1)
	Norwalk-like virus (1)
	Saccharomyces cerevisiae S288C (1)
	human respiratory syncytial virus (1)

Taxonomy

	Riboviria (16)
	Bacteria (2)
	Duplodnaviria (1)
	Eukaryota (1)

Experimental Method

	X-RAY DIFFRACTION (17)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (12)
	2.5 - 3.0 (2)

Release Date

	2010 - 2014 (16)
	2015 - 2019 (1)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (7)
	Transferases (1)

Symmetry Type

	Asymmetric (19)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (7)
	Multi-domain proteins (alpha and beta) (2)
	All beta proteins (1)
	Artifacts (1)

AllSelected

1 to 19 of 19 Structures

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2L9J \| pdb_00002l9j	Download File View File

hRSV M2-1 core domain structure

Dubosclard, V., Blondot, M., Bontems, F., Eleouet, J., Sizun, C.

(2012) PLoS Pathog 8: e1002734-e1002734

Released	2012-02-15
Method	SOLUTION NMR
Organisms	human respiratory syncytial virus
Macromolecule	Matrix protein 2-1 (protein)

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2MKR \| pdb_00002mkr	Download File View File

Structural Characterization of a Complex Between the Acidic Transactivation Domain of EBNA2 and the Tfb1/p62 subunit of TFIIH.

Chabot, P.R., Raiola, L., Lussier-Price, M., Morse, T., Arseneault, G., Archambault, J., Omichinski, J.

(2014) PLoS Pathog 10: e1004042-e1004042

Released	2014-03-05
Method	SOLUTION NMR
Organisms	Human herpesvirus 4 strain B95-8 Saccharomyces cerevisiae S288C
Macromolecule	Epstein-Barr nuclear antigen 2 (protein) RNA polymerase II transcription factor B subunit 1 (protein)

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4E5E \| pdb_00004e5e	Download File View File

Crystal structure of avian influenza virus PAn Apo

DuBois, R.M., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.048 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	MN, SO4

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4E5F \| pdb_00004e5f	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 1

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.392 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	0N7, MN, SO4

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4E5G \| pdb_00004e5g	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 2

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.647 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	MN, SO4, XI7

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4E5H \| pdb_00004e5h	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 3

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.158 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	0N8, MN, SO4

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4E5I \| pdb_00004e5i	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 4

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.944 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	0N9, MN, SO4

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4E5J \| pdb_00004e5j	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 5

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	581, MN, SO4

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4E5L \| pdb_00004e5l	Download File View File

Crystal structure of avian influenza virus PAn bound to compound 6

DuBois, R.M., Slavish, P.J., Webb, T.R., White, S.W.

(2012) PLoS Pathog 8: e1002830-e1002830

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.469 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Macromolecule	Polymerase protein PA (protein)
Unique Ligands	DBH, MN, SO4

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5I61 \| pdb_00005i61	Download File View File

Crystal structure of the RNA-dependent RNA polymerase of a human picorbirnavirus

Collier, A.M., Guo, Y.R., Tao, Y.J.

(2016) PLoS Pathog 12: e1005523-e1005523

Released	2016-03-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Human picobirnavirus strain Hy005102
Macromolecule	Potential RNA-dependent RNA polymerase (protein)

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7N10 \| pdb_00007n10	Download File View File

Co-crystal structure of Prx with ComR DNA binding domain

Rutbeek, N.R., Prehna, G.

(2021) J Biological Chem 297: 100992-100992

Released	2021-07-28
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Streptococcus mutans UA159 Streptococcus pyogenes MGAS315
Macromolecule	ComR (protein) Prx (protein)

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7N1N \| pdb_00007n1n	Download File View File

Prx in complex with ComR DNA-binding domain

Rutbeek, N.R., Prehna, G.

(2021) J Biological Chem 297: 100992-100992

Released	2021-07-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptococcus mutans UA159 Streptococcus pyogenes MGAS315
Macromolecule	ComR (protein) Prx (protein)
Unique Ligands	EPE

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4DVS \| pdb_00004dvs	Download File View File

Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with NBD-557

Kwon, Y.D., Kwong, P.D.

(2014) PLoS One 9: e85940-e85940

Released	2013-02-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	clade A/E 93TH057 HIV-1 gp120 core (protein)
Unique Ligands	0LY, EPE, NAG

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4DVT \| pdb_00004dvt	Download File View File

Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with AS-II-37

Kwon, Y.D., Kwong, P.D.

(2014) PLoS One 9: e85940-e85940

Released	2013-02-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	clade A/E 93TH057 HIV-1 gp120 core (protein)
Unique Ligands	0LZ, EPE, NAG

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4DVV \| pdb_00004dvv	Download File View File

Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with AS-I-261

Kwon, Y.D., Kwong, P.D.

(2014) PLoS One 9: e85940-e85940

Released	2013-02-27
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	clade A/E 93TH057 HIV-1 gp120 core (protein)
Unique Ligands	0M1, EPE, NAG

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4DVW \| pdb_00004dvw	Download File View File

Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with MAE-II-167

Kwon, Y.D., Kwong, P.D.

(2014) PLoS One 9: e85940-e85940

Released	2013-02-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	clade A/E 93TH057 HIV-1 gp120 core (protein)
Unique Ligands	0M4, EPE, NAG

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4DVX \| pdb_00004dvx	Download File View File

Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with MAE-II-188

Kwon, Y.D., Kwong, P.D.

(2014) PLoS One 9: e85940-e85940

Released	2013-02-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	clade A/E 93TH057 HIV-1 gp120 core (protein)
Unique Ligands	0M5, EPE, NAG

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4NRT \| pdb_00004nrt	Download File View File

Human Norovirus polymerase bound to Compound 6 (suramin derivative)

Croci, R., Pezzullo, M., Tarantino, D., Mastrangelo, E., Milani, M., Bolognesi, M.

(2014) PLoS One 9: e91765-e91765

Released	2014-10-15
Method	X-RAY DIFFRACTION 2.022 Å
Organisms	Norwalk-like virus
Macromolecule	hNV-RdRp (protein)
Unique Ligands	2NG

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4NRU \| pdb_00004nru	Download File View File

Murine Norovirus RNA-dependent-RNA-polymerase in complex with Compound 6, a suramin derivative

Milani, M., Croci, R., Pezzullo, M., Tarantino, D., Mastrangelo, E., Bolognesi, M.

(2014) PLoS One 9: e91765-e91765

Released	2014-10-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Murine norovirus 1
Macromolecule	RNA dependent RNA polymerase (protein)
Unique Ligands	2NG, MG

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2L9J | pdb_00002l9j

hRSV M2-1 core domain structure

2MKR | pdb_00002mkr

Structural Characterization of a Complex Between the Acidic Transactivation Domain of EBNA2 and the Tfb1/p62 subunit of TFIIH.

4E5E | pdb_00004e5e

Crystal structure of avian influenza virus PAn Apo

4E5F | pdb_00004e5f

Crystal structure of avian influenza virus PAn bound to compound 1

4E5G | pdb_00004e5g

Crystal structure of avian influenza virus PAn bound to compound 2

4E5H | pdb_00004e5h

Crystal structure of avian influenza virus PAn bound to compound 3

4E5I | pdb_00004e5i

Crystal structure of avian influenza virus PAn bound to compound 4

4E5J | pdb_00004e5j

Crystal structure of avian influenza virus PAn bound to compound 5

4E5L | pdb_00004e5l

Crystal structure of avian influenza virus PAn bound to compound 6

5I61 | pdb_00005i61

Crystal structure of the RNA-dependent RNA polymerase of a human picorbirnavirus

7N10 | pdb_00007n10

Co-crystal structure of Prx with ComR DNA binding domain

7N1N | pdb_00007n1n

Prx in complex with ComR DNA-binding domain

4DVS | pdb_00004dvs

Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with NBD-557

4DVT | pdb_00004dvt

Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with AS-II-37

4DVV | pdb_00004dvv

Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with AS-I-261

4DVW | pdb_00004dvw

Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with MAE-II-167

4DVX | pdb_00004dvx

Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with MAE-II-188

4NRT | pdb_00004nrt

Human Norovirus polymerase bound to Compound 6 (suramin derivative)

4NRU | pdb_00004nru

Murine Norovirus RNA-dependent-RNA-polymerase in complex with Compound 6, a suramin derivative

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2L9J | pdb_00002l9j

2MKR | pdb_00002mkr

4E5E | pdb_00004e5e

4E5F | pdb_00004e5f

4E5G | pdb_00004e5g

4E5H | pdb_00004e5h

4E5I | pdb_00004e5i

4E5J | pdb_00004e5j

4E5L | pdb_00004e5l

5I61 | pdb_00005i61

7N10 | pdb_00007n10

7N1N | pdb_00007n1n

4DVS | pdb_00004dvs

4DVT | pdb_00004dvt

4DVV | pdb_00004dvv

4DVW | pdb_00004dvw

4DVX | pdb_00004dvx

4NRT | pdb_00004nrt

4NRU | pdb_00004nru