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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Space Group = "P 62 2 2"

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Search Summary

This query matches 12,739 Structures.

Refinements

Structure Determination Methodology

experimental (12,739)

Scientific Name of Source Organism

	Homo sapiens (3,549)
	Mus musculus (848)
	Rattus norvegicus (565)
	Escherichia coli (525)
	Escherichia coli K-12 (401)
	Saccharomyces cerevisiae (397)
	Bos taurus (275)
	Saccharomyces cerevisiae S288C (239)
	Physeter macrocephalus (200)
	Equus caballus (182)

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Taxonomy

	Eukaryota (7,730)
	Bacteria (4,899)
	Archaea (393)
	other sequences (136)
	Riboviria (84)
	Eukaryota (eukaryotes) (77)
	Duplodnaviria (43)
	Monodnaviria (25)
	Riboviria (RNA viruses and viroids) (6)
	Varidnaviria (6)

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Experimental Method

	X-RAY DIFFRACTION (9,305)
	ELECTRON MICROSCOPY (2,697)
	SOLUTION NMR (694)
	NEUTRON DIFFRACTION (27)
	ELECTRON CRYSTALLOGRAPHY (18)
	SOLID-STATE NMR (9)
	SOLUTION SCATTERING (2)
	POWDER DIFFRACTION (1)

Polymer Entity Type

	Protein (12,739)
	DNA (30)
	RNA (16)

Refinement Resolution (Å)

	0.5 - 1.0 (64)
	1.0 - 1.5 (1,019)
	1.5 - 2.0 (2,966)
	2.0 - 2.5 (2,605)
	2.5 - 3.0 (2,049)
	3.0 - 3.5 (1,750)
	3.5 - 4.0 (928)
	4.0 - 4.5 (298)
	> 4.5 (361)

Release Date

	1975 - 1979 (15)
	1980 - 1984 (29)
	1985 - 1989 (9)
	1990 - 1994 (167)
	1995 - 1999 (498)
	2000 - 2004 (1,078)
	2005 - 2009 (1,818)
	2010 - 2014 (2,706)
	2015 - 2019 (2,782)
	2020 - 2024 (3,389)

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Enzyme Classification Name

	Translocases (822)
	Oxidoreductases (850)
	Hydrolases (682)
	Transferases (156)
	Isomerases (121)
	Lyases (25)
	Ligases (8)

Membrane Protein Annotation

	PDBTM (3,498)
	mpstruc (2,304)
	OPM (1,909)
	MemProtMD (2,540)

Symmetry Type

	Asymmetric (8,026)
	Cyclic (4,449)
	Dihedral (650)
	Octahedral (80)
	Helical (33)
	Tetrahedral (19)
	Icosahedral (1)

SCOP Classification

	All alpha proteins (2,202)
	All beta proteins (1,527)
	Alpha and beta proteins (a/b) (1,621)
	Alpha and beta proteins (a+b) (692)
	Artifacts (790)
	Membrane and cell surface proteins and peptides (550)
	Small proteins (180)
	Coiled coil proteins (22)
	Multi-domain proteins (alpha and beta) (47)
	Low resolution protein structures (10)

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AllSelected

1 to 25 of 12,739 Structures

Page 1 of 510

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1A7L \| pdb_00001a7l	Download File View File

DOMINANT B-CELL EPITOPE FROM THE PRES2 REGION OF HEPATITIS B VIRUS IN THE FORM OF AN INSERTED PEPTIDE SEGMENT IN MALTODEXTRIN-BINDING PROTEIN

Saul, F.A., Vulliez-Lenormand, B., Lema, F., Bentley, G.A.

(1998) J Mol Biology 280: 185-192

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	synthetic construct
Macromolecule	MALE-B363 (protein)
Unique branched monosaccharides	GLC

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1AR0 \| pdb_00001ar0	Download File View File

NUCLEAR TRANSPORT FACTOR 2 (NTF2) E42K MUTANT

Mccoy, A.J., Stewart, M.J.

(1997) J Mol Biology 272: 716-730

Released	1997-12-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	NUCLEAR TRANSPORT FACTOR 2 (protein)

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1ASK \| pdb_00001ask	Download File View File

NUCLEAR TRANSPORT FACTOR 2 (NTF2) H66A MUTANT

Mccoy, A.J., Stewart, M.J.

(1997) J Mol Biology 272: 716-730

Released	1998-01-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	NUCLEAR TRANSPORT FACTOR 2 (protein)

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1BA2 \| pdb_00001ba2	Download File View File

D67R MUTANT OF D-RIBOSE-BINDING PROTEIN FROM ESCHERICHIA COLI

Bjorkman, A.J., Mowbray, S.L.

(1998) J Mol Biology 279: 651-664

Released	1998-07-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	D-RIBOSE-BINDING PROTEIN (protein)

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1BLR \| pdb_00001blr	Download File View File

NMR SOLUTION STRUCTURE OF HUMAN CELLULAR RETINOIC ACID BINDING PROTEIN-TYPE II, 22 STRUCTURES

Wang, L., Li, Y., Abilddard, F., Yan, H., Markely, J.

(1998) Biochemistry 37: 12727-12736

Released	1999-01-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CELLULAR RETINOIC ACID BINDING PROTEIN-TYPE II (protein)

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1BSY \| pdb_00001bsy	Download File View File

STRUCTURAL BASIS OF THE TANFORD TRANSITION OF BOVINE BETA-LACTOGLOBULIN FROM CRYSTAL STRUCTURES AT THREE PH VALUES; PH 7.1

Qin, B.Y., Bewley, M.C., Creamer, L.K., Baker, E.N., Jameson, G.B.

(1998) Biochemistry 37: 14014-14023

Released	1999-01-27
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Bos taurus
Macromolecule	BETA-LACTOGLOBULIN (protein)

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1DZJ \| pdb_00001dzj	Download File View File

Porcine Odorant Binding Protein Complexed with 2-amino-4-butyl-5-propylselenazole

Vincent, F., Spinelli, S., Cambillau, C., Tegoni, M.

(2000) J Mol Biology 300: 127

Released	2000-12-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sus scrofa
Macromolecule	ODORANT-BINDING PROTEIN (protein)
Unique Ligands	SES

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1DZK \| pdb_00001dzk	Download File View File

Porcine Odorant Binding Protein Complexed with pyrazine (2-isobutyl-3-metoxypyrazine)

Vincent, F., Spinelli, S., Cambillau, C., Tegoni, M.

(2000) J Mol Biology 300: 127

Released	2000-12-06
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Sus scrofa
Macromolecule	ODORANT-BINDING PROTEIN (protein)
Unique Ligands	PRZ

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1E0P \| pdb_00001e0p	Download File View File

L intermediate of bacteriorhodopsin

Royant, A., Edman, K., Ursby, T., Pebay-Peyroula, E., Landau, E.M., Neutze, R.

(2000) Nature 406: 645

Released	2000-08-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN, GROUND STATE (protein)
Unique Ligands	RET

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1GNU \| pdb_00001gnu	Download File View File

GABA(A) receptor associated protein GABARAP

Knight, D., Harris, R., Moss, S., Driscoll, P.C., Keep, N.H.

(2002) J Biological Chem 277: 5556

Released	2001-12-03
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	GABARAP (protein)
Unique Ligands	NI

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1H3Q \| pdb_00001h3q	Download File View File

Crystal structure of SEDL at 2.4 Angstroms resolution

Jang, S.B., Kim, Y.-G., Cho, Y.-S., Oh, B.-H.

(2002) J Biological Chem 277: 49863

Released	2002-10-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	SEDLIN (protein)

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1OGC \| pdb_00001ogc	Download File View File

The Structure of Bacillus subtilis RbsD complexed with D-ribose

Kim, M.-S., Oh, B.-H.

(2003) J Biological Chem 278: 28173

Released	2003-09-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	HIGH AFFINITY RIBOSE TRANSPORT PROTEIN RBSD (protein)
Unique Ligands	CL

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1OGD \| pdb_00001ogd	Download File View File

The Structure of Bacillus subtilis RbsD complexed with D-ribose

Kim, M.-S., Oh, B.-H.

(2003) J Biological Chem 278: 28173

Released	2003-09-01
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacillus subtilis
Macromolecule	HIGH AFFINITY RIBOSE TRANSPORT PROTEIN RBSD (protein)
Unique Ligands	CL, RIP

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1OGE \| pdb_00001oge	Download File View File

The Structure of Bacillus subtilis RbsD complexed with Ribose 5-phosphate

Kim, M.-S., Oh, B.-H.

(2003) J Biological Chem 278: 28173

Released	2003-09-01
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Bacillus subtilis
Macromolecule	HIGH AFFINITY RIBOSE TRANSPORT PROTEIN RBSD (protein)
Unique Ligands	CL, RP5

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1OGF \| pdb_00001ogf	Download File View File

The Structure of Bacillus subtilis RbsD complexed with glycerol

Kim, M.-S., Oh, B.-H.

(2003) J Biological Chem 278: 28173

Released	2003-09-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	HIGH AFFINITY RIBOSE TRANSPORT PROTEIN RBSD (protein)
Unique Ligands	CL, GOL

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1OIP \| pdb_00001oip	Download File View File

The Molecular Basis of Vitamin E Retention: Structure of Human Alpha-Tocopherol Transfer Protein

Meier, R., Tomizaki, T., Schulze-Briese, C., Baumann, U., Stocker, A.

(2003) J Mol Biology 331: 725

Released	2004-01-14
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-TOCOPHEROL TRANSFER PROTEIN (protein)
Unique Ligands	SO4, VIV

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1OIZ \| pdb_00001oiz	Download File View File

The Molecular Basis of Vitamin E Retention: Structure of Human Alpha-Tocopherol Transfer Protein

Meier, R., Tomizaki, T., Schulze-Briese, C., Baumann, U., Stocker, A.

(2003) J Mol Biology 331: 725

Released	2004-01-14
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-TOCOPHEROL TRANSFER PROTEIN (protein)
Unique Ligands	TRT

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1OUN \| pdb_00001oun	Download File View File

CRYSTAL STRUCTURE OF NUCLEAR TRANSPORT FACTOR 2 (NTF2)

Bullock, T.L., Stewart, M.J.

(1996) J Mol Biology 260: 422-431

Released	1997-04-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	NUCLEAR TRANSPORT FACTOR 2 (protein)

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1QMA \| pdb_00001qma	Download File View File

Nuclear Transport Factor 2 (NTF2) W7A mutant

Bayliss, R., Ribbeck, K., Akin, D., Kent, H.M., Feldherr, C.M., Gorlich, D., Stewart, M.J.

(1999) J Mol Biology 293: 579

Released	2000-02-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus norvegicus
Macromolecule	NUCLEAR TRANSPORT FACTOR 2 (protein)

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1TSH \| pdb_00001tsh	Download File View File

TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION

Schormann, N., Murrell, J.R., Benson, M.D.

(1998) Amyloid 5: 175-187

Released	1997-04-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	TRANSTHYRETIN (protein)

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1URP \| pdb_00001urp	Download File View File

D-RIBOSE-BINDING PROTEIN FROM ESCHERICHIA COLI

Bjorkman, A.J., Mowbray, S.L.

(1998) J Mol Biology 279: 651-664

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	D-RIBOSE-BINDING PROTEIN (protein)

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1UV7 \| pdb_00001uv7	Download File View File

periplasmic domain of EpsM from Vibrio cholerae

Abendroth, J., Hol, W.G.J.

(2004) J Mol Biology 338: 585

Released	2004-04-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Vibrio cholerae
Macromolecule	GENERAL SECRETION PATHWAY PROTEIN M (protein)

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1UW5 \| pdb_00001uw5	Download File View File

Structure of PITP-alpha complexed to phosphatidylinositol

Tilley, S.J., Skippen, A., Murray-Rust, J., Cockcroft, S., McDonald, N.Q.

(2004) Structure 12: 317

Released	2004-03-04
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN ALPHA ISOFORM (protein)
Unique Ligands	PIE