Download MendeleyPutative sugar-binding domain of trancsriptional regulator DeoR from Pseudomonas syringae pv. tomato.
Cuff, M.E., Duggan, E., Clancy, S., Joachimiak, A.To be published.
2R5F
Putative sugar-binding domain of transcriptional regulator DeoR from Pseudomonas syringae pv. tomato
- PDB DOI: https://doi.org/10.2210/pdb2R5F/pdb
- Classification: TRANSCRIPTION
- Organism(s): Pseudomonas syringae pv. tomato str. DC3000
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2007-09-03 Released: 2007-09-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.252
- R-Value Work: 0.195
- R-Value Observed: 0.197
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcriptional regulator, putative | 264 | Pseudomonas syringae pv. tomato str. DC3000 | Mutation(s): 0 Gene Names: DeoR, PSPTO_2395 |  | |
UniProt | |||||
Find proteins for Q883G8 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)) Explore Q883G8 Go to UniProtKB: Q883G8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q883G8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.252
- R-Value Work: 0.195
- R-Value Observed: 0.197
- Space Group: P 43
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 42.112 | α = 90 |
| b = 42.112 | β = 90 |
| c = 144.782 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MLPHARE | phasing |
| DM | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| SHELXD | phasing |
| SHELXE | model building |
| SOLVE | phasing |
| RESOLVE | phasing |
| ARP/wARP | model building |
| CCP4 | phasing |
| O | model building |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2007-09-18 Deposition Author(s): Cuff, M.E., Duggan, E., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-09-18
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary
