Download MendeleyCrystal Structure of Probable sor Operon Regulator from Shigella flexneri
Kim, Y., Evdokimova, E., Kudritska, M., Savchenko, A., Edwards, A., Anderson, W.F., Joachimiak, A.To be published.
3EFB
Crystal Structure of Probable sor Operon Regulator from Shigella flexneri
- PDB DOI: https://doi.org/10.2210/pdb3EFB/pdb
- Classification: TRANSCRIPTION
- Organism(s): Shigella flexneri 2a str. 2457T
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-09-08 Released: 2008-09-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.249 (Depositor), 0.191 (DCC)
- R-Value Work: 0.200 (Depositor), 0.194 (DCC)
- R-Value Observed: 0.203 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Probable sor-operon regulator | 266 | Shigella flexneri 2a str. 2457T | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A0H2V3A6 (Shigella flexneri) Explore A0A0H2V3A6 Go to UniProtKB: A0A0H2V3A6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H2V3A6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACY Query on ACY | E [auth B] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.249 (Depositor), 0.191 (DCC)
- R-Value Work: 0.200 (Depositor), 0.194 (DCC)
- R-Value Observed: 0.203 (Depositor)
Diffraction Data: https://doi.org/10.18430/m33efb
Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 69.536 | α = 90 |
| b = 238.463 | β = 90 |
| c = 53.759 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | data collection |
| HKL-3000 | phasing |
| MLPHARE | phasing |
| DM | model building |
| SHELXD | phasing |
| RESOLVE | model building |
| Coot | model building |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2008-09-23 Deposition Author(s): Kim, Y., Evdokimova, E., Kudritska, M., Savchenko, A., Edwards, A., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2008-09-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary
