Download MendeleyXylanase T6 (XT6) from Geobacillus Stearothermophilus in complex with xylohexaose
Dann, R.D., Solomon, H.V., Lansky, S., Ben-David, A., Lavid, N., Salama, R., Shoham, Y., Shoham, G.To be published.
4PRW
Xylanase T6 (XT6) from Geobacillus Stearothermophilus in complex with xylohexaose
- PDB DOI: https://doi.org/10.2210/pdb4PRW/pdb
- Classification: HYDROLASE
- Organism(s): Geobacillus stearothermophilus
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2014-03-06 Released: 2015-03-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.194
- R-Value Work: 0.151
- R-Value Observed: 0.153
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 2.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Endo-1,4-beta-xylanase | 379 | Geobacillus stearothermophilus | Mutation(s): 1 EC: 3.2.1.8 |  | |
UniProt | |||||
Find proteins for P40943 (Geobacillus stearothermophilus) Explore P40943 Go to UniProtKB: P40943 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P40943 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | F [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| ZN Query on ZN | C [auth A] D [auth A] E [auth A] G [auth A] I [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CL Query on CL | H [auth A], J [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.194
- R-Value Work: 0.151
- R-Value Observed: 0.153
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 121.8 | α = 90 |
| b = 61.67 | β = 119.38 |
| c = 89.35 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data collection |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| REFMAC | phasing |
Entry History
Deposition Data
- Released Date: 2015-03-11 Deposition Author(s): Dann, R.D., Solomon, H.V., Lansky, S., Ben-David, A., Lavid, N., Salama, R., Shoham, Y., Shoham, G.
Revision History (Full details and data files)
- Version 1.0: 2015-03-11
Type: Initial release - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary - Version 2.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary
