Download MendeleyTHE CRYSTAL STRUCTURE OF THE alpha-Glucosidase (GH 31) FROM RUMINOCOCCUS OBEUM ATCC 29174 in complex with voglibose
Tan, K., Tesar, C., Jedrzejczak, R., Joachimiak, A.To be published.
6C9X
THE CRYSTAL STRUCTURE OF THE alpha-Glucosidase (GH 31) FROM RUMINOCOCCUS OBEUM ATCC 29174 in complex with voglibose
- PDB DOI: https://doi.org/10.2210/pdb6C9X/pdb
- Classification: HYDROLASE
- Organism(s): Blautia obeum ATCC 29174
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-01-29 Released: 2018-03-07
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.46 Å
- R-Value Free: 0.162
- R-Value Work: 0.142
- R-Value Observed: 0.143
Starting Model: experimental
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This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glycosyl hydrolase, family 31 | 666 | Blautia obeum ATCC 29174 | Mutation(s): 0 Gene Names: RUMOBE_03919 EC: 3.2.1 |  | |
UniProt | |||||
Find proteins for A5ZY13 (Blautia obeum ATCC 29174) Explore A5ZY13 Go to UniProtKB: A5ZY13 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A5ZY13 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| VOG Query on VOG | C [auth A], J [auth B] | (1S,2S,3R,4S,5S)-5-[(1,3-dihydroxypropan-2-yl)amino]-1-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol C10 H21 N O7 FZNCGRZWXLXZSZ-CIQUZCHMSA-N |  | ||
| GOL Query on GOL | G [auth A], H [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| FMT Query on FMT | I [auth A], N [auth B] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | ||
| K Query on K | D [auth A], K [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
| CL Query on CL | E [auth A], F [auth A], L [auth B], M [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CME Query on CME | A, B | L-PEPTIDE LINKING | C5 H11 N O3 S2 |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.46 Å
- R-Value Free: 0.162
- R-Value Work: 0.142
- R-Value Observed: 0.143
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.418 | α = 90 |
| b = 124.308 | β = 108.5 |
| c = 87.741 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-03-07 Deposition Author(s): Tan, K., Tesar, C., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM094585 |
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM115586 |
Revision History (Full details and data files)
- Version 1.0: 2018-03-07
Type: Initial release - Version 1.1: 2021-07-21
Changes: Author supporting evidence, Derived calculations - Version 1.2: 2023-10-04
Changes: Data collection, Database references, Refinement description - Version 1.3: 2024-10-30
Changes: Structure summary
