Download MendeleyCrystal structure of unknown function protein yfdX from Shigella flexneri
Chang, C., Skarina, T., Savchenko, A., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
6UXT | pdb_00006uxt
Crystal structure of unknown function protein yfdX from Shigella flexneri
- PDB DOI: https://doi.org/10.2210/pdb6UXT/pdb
- Classification: STRUCTURAL GENOMICS
- Organism(s): Shigella flexneri 2a str. 2457T
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-11-08 Released: 2019-11-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.200 (Depositor)
- R-Value Work: 0.170 (Depositor)
- R-Value Observed: 0.172 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
Currently 6UXT does not have a validation slider image.
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| YfdX protein | 186 | Shigella flexneri 2a str. 2457T | Mutation(s): 0 Gene Names: yfdX, |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | L [auth F] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | ||
| PGE Query on PGE | I [auth B], K [auth E] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
| PEG Query on PEG | J [auth C] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.200 (Depositor)
- R-Value Work: 0.170 (Depositor)
- R-Value Observed: 0.172 (Depositor)
Diffraction Data: https://doi.org/10.18430/m36uxt
Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 51.579 | α = 97.35 |
| b = 92.92 | β = 98.44 |
| c = 93.469 | γ = 95.46 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
Structure Validation
Currently 6UXT does not have a validation slider image.
Entry History
Deposition Data
- Released Date: 2019-11-20 Deposition Author(s): Chang, C., Skarina, T., Savchenko, A., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2019-11-20
Type: Initial release - Version 1.1: 2023-10-11
Changes: Data collection, Database references, Refinement description
