Download MendeleyDetecting and quantifying strain in protein folding
Anil, B., Kim, E.Y., Cho, J.H., Schindelin, H., Raleigh, D.P.To be published.
2HVF | pdb_00002hvf
Crystal Structure of N-terminal Domain of Ribosomal Protein L9 (NTL9), G34dA
- PDB DOI: https://doi.org/10.2210/pdb2HVF/pdb
- Classification: STRUCTURAL PROTEIN
- Organism(s): Geobacillus stearothermophilus
- Mutation(s): Yes
- Deposited: 2006-07-28 Released: 2007-06-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.57 Å
- R-Value Free: 0.208 (Depositor), 0.230 (DCC)
- R-Value Work: 0.159 (Depositor), 0.170 (DCC)
- R-Value Observed: 0.162 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 50S ribosomal protein L9 | 52 | N/A | Mutation(s): 1 |  | |
UniProt | |||||
Find proteins for P02417 (Geobacillus stearothermophilus) Explore P02417 Go to UniProtKB: P02417 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P02417 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| IMD Query on IMD | J [auth A] | IMIDAZOLE C3 H5 N2 RAXXELZNTBOGNW-UHFFFAOYSA-O |  | ||
| ZN Query on ZN | B [auth A], C [auth A], D [auth A], E [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| ACY Query on ACY | K [auth A] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |  | ||
| CL Query on CL | F [auth A], G [auth A], H [auth A], I [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.57 Å
- R-Value Free: 0.208 (Depositor), 0.230 (DCC)
- R-Value Work: 0.159 (Depositor), 0.170 (DCC)
- R-Value Observed: 0.162 (Depositor)
Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 53.517 | α = 90 |
| b = 53.517 | β = 90 |
| c = 36.178 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| REFMAC | phasing |
Entry History
Deposition Data
- Released Date: 2007-06-12 Deposition Author(s): Anil, B., Kim, E.Y., Cho, J.H., Schindelin, H., Raleigh, D.P.
Revision History (Full details and data files)
- Version 1.0: 2007-06-12
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2021-10-20
Changes: Database references, Derived calculations - Version 1.5: 2024-10-30
Changes: Data collection, Structure summary
