Download MendeleyCrystal Structure Analysis of the Dengue-1 Envelope Protein Domain III
Nelson, C.A., Kim, T., Warren, J.T., Fremont, D.H.To be published.
3IRC | pdb_00003irc
Crystal structure analysis of dengue-1 envelope protein domain III
- PDB DOI: https://doi.org/10.2210/pdb3IRC/pdb
- Entry: 3IRC supersedes: 3EGP
- Classification: VIRAL PROTEIN
- Organism(s): dengue virus type 1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-08-21 Released: 2009-09-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.221 (Depositor), 0.240 (DCC)
- R-Value Work: 0.211 (Depositor), 0.230 (DCC)
- R-Value Observed: 0.212 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ENVELOPE PROTEIN | 108 | dengue virus type 1 | Mutation(s): 0 Gene Names: ENVELOPE |  | |
UniProt | |||||
Find proteins for Q9J7C6 (dengue virus type 1) Explore Q9J7C6 Go to UniProtKB: Q9J7C6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9J7C6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], C [auth A], D [auth A], E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.221 (Depositor), 0.240 (DCC)
- R-Value Work: 0.211 (Depositor), 0.230 (DCC)
- R-Value Observed: 0.212 (Depositor)
Space Group: P 21 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 88.087 | α = 90 |
| b = 88.087 | β = 90 |
| c = 88.087 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
Entry History
Deposition Data
- Released Date: 2009-09-29 Deposition Author(s): Nelson, C.A., Kim, T., Warren, J.T., Chruszcz, M., Minor, W., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID)
- This entry supersedes: 3EGP
Revision History (Full details and data files)
- Version 1.0: 2009-09-29
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2017-11-01
Changes: Advisory, Refinement description - Version 1.3: 2022-04-13
Changes: Advisory, Database references, Derived calculations, Structure summary - Version 1.4: 2023-09-06
Changes: Data collection, Refinement description - Version 1.5: 2024-11-27
Changes: Structure summary
