Download MendeleyThe effects of CapZ peptide (TRTK12) on the protein dynamics of S100B and S100B D63N
Liriano, M.A., Varney, K.M., Inman, K.G., Ishima, R., Weber, D.J.To be published.
3RM1 | pdb_00003rm1
1.24 Angstrom X-ray structure of bovine TRTK12-Ca(2+)-S100B D63N
- PDB DOI: https://doi.org/10.2210/pdb3RM1/pdb
- Classification: METAL BINDING PROTEIN/PROTEIN BINDING
- Organism(s): Bos taurus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2011-04-20 Released: 2012-04-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.24 Å
- R-Value Free: 0.223 (Depositor), 0.240 (DCC)
- R-Value Work: 0.204 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.205 (Depositor)
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein S100-B | 92 | Bos taurus | Mutation(s): 1 Gene Names: S100B |  | |
UniProt | |||||
Find proteins for P02638 (Bos taurus) Explore P02638 Go to UniProtKB: P02638 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P02638 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | C [auth A], D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.24 Å
- R-Value Free: 0.223 (Depositor), 0.240 (DCC)
- R-Value Work: 0.204 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.205 (Depositor)
Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 35.007 | α = 90 |
| b = 89.251 | β = 90 |
| c = 59.668 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2012-04-25 Deposition Author(s): Liriano, M.A., Weber, D.J.
Revision History (Full details and data files)
- Version 1.0: 2012-04-25
Type: Initial release - Version 1.1: 2017-11-08
Changes: Refinement description - Version 1.2: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
