Download MendeleyThe structure of NAP1-Related Protein(NRP1) in Arabidopsis
Zhu, Y., Rong, L., Yang, Y., Zhang, C., Feng, H.Y., Zheng, L.N., Shen, W.H., Ma, J.B., Dong, A.W.To be published.
5DAY | pdb_00005day
The structure of NAP1-Related Protein(NRP1) in Arabidopsis
- PDB DOI: https://doi.org/10.2210/pdb5DAY/pdb
- Classification: CHAPERONE
- Organism(s): Arabidopsis thaliana
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2015-08-20 Released: 2016-09-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.33 Å
- R-Value Free: 0.269 (Depositor), 0.250 (DCC)
- R-Value Work: 0.230 (Depositor), 0.230 (DCC)
- R-Value Observed: 0.234 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NAP1-related protein 1 | 208 | Arabidopsis thaliana | Mutation(s): 0 Gene Names: NRP1, NFA6, At1g74560, F1M20.24 |  | |
UniProt | |||||
Find proteins for Q9CA59 (Arabidopsis thaliana) Explore Q9CA59 Go to UniProtKB: Q9CA59 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9CA59 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | C [auth A], D [auth A], E [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.33 Å
- R-Value Free: 0.269 (Depositor), 0.250 (DCC)
- R-Value Work: 0.230 (Depositor), 0.230 (DCC)
- R-Value Observed: 0.234 (Depositor)
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 60.542 | α = 90 |
| b = 60.812 | β = 90 |
| c = 135.248 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| Coot | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2016-09-21 Deposition Author(s): Zhu, Y., Rong, L., Yang, Y., Zhang, C., Feng, H.Y., Zheng, L.N., Shen, W.H., Ma, J.B., Dong, A.W.
Revision History (Full details and data files)
- Version 1.0: 2016-09-21
Type: Initial release - Version 1.1: 2024-03-20
Changes: Data collection, Database references, Derived calculations
