2D56 | pdb_00002d56

Solution Structure of ASABF, Antibacterial Peptide Isolated from a Nematode, Ascaris Suum

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Nematode antimicrobial peptide-like	8046226	4004968	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Scorpion toxin-like	8093081	3000309	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Antimicrobial25	e2d56A1	A: few secondary structure elements	X: omega toxin-like	H: omega toxin-related	T: Scorpion toxin-like	F: Antimicrobial25	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.30.110	Alpha Beta	2-Layer Sandwich	Defensin A-like	Antibacterial factor-related peptide	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF16839	Nematode antimicrobial peptide (Antimicrobial25)	Nematode antimicrobial peptide	This family of antimicrobial peptides is found in nematodes [1-3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	ASABF	-	biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response defense response to other organism response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR038204	Antibacterial factor-related peptide superfamily	Homologous Superfamily
A	IPR031770	Antibacterial factor-related peptide	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Monotopic/peripheral	All beta monotopic/peripheral	Omega conotoxin-like knottin	Nematode antimicrobial peptide

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.