2DLB | pdb_00002dlb

X-ray Crystal Structure of Protein yopT from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR412

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2dlba1	All beta proteins	YopT-like	YopT-like	YopT-like	Uncharacterized protein YopT	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
B	d2dlbb_	All beta proteins	YopT-like	YopT-like	YopT-like	automated matches	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YopT-like	8021401	4001838	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YopT-like	8033781	3000450	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	YopT-like	8033781	3000450	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	UNK_F_TYPE	e2dlbA1	A: a+b duplicates or obligate multimers	X: YopT-like (From Topology)	H: YopT-like (From Topology)	T: YopT-like	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e2dlbB1	A: a+b duplicates or obligate multimers	X: YopT-like (From Topology)	H: YopT-like (From Topology)	T: YopT-like	F: UNK_F_TYPE	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.20.330	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Protein of unknown function YopT	CATH (4.3.0)
B	3.10.20.330	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Protein of unknown function YopT	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF09467	Hypothetical protein Yopt (Yopt)	Hypothetical protein Yopt	This hypothetical protein is expressed in bacteria, particularly Bacillus subtilis. It forms homo-dimers, with each monomer consisting of one alpha helix and three beta strands.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR038082	YopT domain superfamily	Homologous Superfamily
A, B	IPR018572	Protein of unknown function YopT	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.