2XMA | pdb_00002xma

DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE RIGHT END DNA COMPLEX

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Transposase IS200-like	8088143	3001347	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Transposase IS200-like	8088143	3001347	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Transposase IS200-like	8088143	3001347	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Transposase IS200-like	8088143	3001347	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Y1_Tnp	e2xmaA1	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Transposase IS200-like	F: Y1_Tnp	ECOD (1.6)
B	Y1_Tnp	e2xmaB1	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Transposase IS200-like	F: Y1_Tnp	ECOD (1.6)
E	Y1_Tnp	e2xmaE1	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Transposase IS200-like	F: Y1_Tnp	ECOD (1.6)
F	Y1_Tnp	e2xmaF1	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Transposase IS200-like	F: Y1_Tnp	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.1290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Transposase IS200-like	CATH (4.3.0)
B	3.30.70.1290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Transposase IS200-like	CATH (4.3.0)
E	3.30.70.1290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Transposase IS200-like	CATH (4.3.0)
F	3.30.70.1290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Transposase IS200-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, E, F	PF01797	Transposase IS200 like (Y1_Tnp)	Transposase IS200 like	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, E, F	TRANSPOSASE	DNA binding binding nucleic acid binding endonuclease activity nuclease activity hydrolase activity, acting on ester bonds hydrolase activity catalytic activity cation binding ion binding metal ion binding small molecule binding transposase activity catalytic activity, acting on DNA DNA binding binding nucleic acid binding endonuclease activity nuclease activity hydrolase activity, acting on ester bonds hydrolase activity catalytic activity cation binding ion binding metal ion binding small molecule binding transposase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid	nucleobase-containing compound metabolic process DNA recombination cellular process metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process transposition DNA transposition nucleic acid metabolic process	-
C, D, G, H	DRA2 TRANSPOSASE RIGHT END RECOGNITION SITE	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, E, F	IPR036515	Transposase IS200-like superfamily	Homologous Superfamily
A, B, E, F	IPR002686	Transposase IS200-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.